mRNA_P-littoralis_Contig191.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.37.1
Unique NamemRNA_P-littoralis_Contig191.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A6H5KHX6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX6_9PHAE)

HSP 1 Score: 535 bits (1379), Expect = 4.660e-186
Identity = 269/360 (74.72%), Postives = 304/360 (84.44%), Query Frame = 1
Query:  151 MAPSIDFCLPAVLAAITCAEGFLLPASVSQSGNTDRSSGCNGLRTPSAAXXXXXXXRRLTSSAIHQQRPRRCLRRSSLGPDGREIDIIRHREAHSFAEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDPERVQELFERDEWEGGSLTHEGKITPKVHLFKGKRSATKLQSPDFLGELIQEVEGEALEGEVLEGTP-EDNQEWLTDAVAQGTLNVLDEGPGDIVPHKDVGQDKPFKF 1227
            MAP    C+PA+LAA++C  GF+LP+S   +  T R  GCNGL T   +           SSA    RPRR  RRS+LGPDG+EIDIIRHREA+S+AEYWD+FYAGG AGSL+DGESYDWFFG+SRLAVYLNLHVGGARAGRVLVLG GNSEVSPKMWENGWKDIVSIDFC PVIEAMQ AHADKPGM+WKVMDARDMA+ E  SFDAVIDKG+TDSVMYNDKF++MMAK+SYE+ARVLKPGGVYLM DYRDPER+QELFERDEWEGGSLT EGKIT KVHLFKGKRS+ + Q+PDFL ELI+EVEG+ ++GEVLE  P ED+QEWL DA+AQGT+++ DEGP D VPHKDVGQDKPFKF
Sbjct:    1 MAPGSRLCVPALLAAVSCVGGFILPSSGPTNRGTLRKRGCNGLPTVRGSP---------ASSAHDYCRPRRDSRRSALGPDGKEIDIIRHREAYSYAEYWDEFYAGGEAGSLKDGESYDWFFGYSRLAVYLNLHVGGARAGRVLVLGCGNSEVSPKMWENGWKDIVSIDFCNPVIEAMQSAHADKPGMEWKVMDARDMAELETGSFDAVIDKGLTDSVMYNDKFSVMMAKVSYEVARVLKPGGVYLMADYRDPERIQELFERDEWEGGSLTQEGKITSKVHLFKGKRSSVEPQTPDFLEELIEEVEGD-VQGEVLEAIPQEDSQEWLVDAIAQGTISIPDEGPVDEVPHKDVGQDKPFKF 350          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: D7G816_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G816_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 1.200e-114
Identity = 166/204 (81.37%), Postives = 185/204 (90.69%), Query Frame = 1
Query:  619 MWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDPERVQELFERDEWEGGSLTHEGKITPKVHLFKGKRSATKLQSPDFLGELIQEVEGEALEGEVLEGTP-EDNQEWLTDAVAQGTLNVLDEGPGDIVPHKDVGQDKPFKF 1227
            MWENGWKDIVSIDFC PVIEAMQ AHADKPGM+WKVMDARDM +FE  SFDAVIDKG+TDSVMYNDKF++MMAK+SYE+ARVLKPGGVYLMTDYRDPERVQELFERDEWE GSLT EGKIT KVHLFKGKRS+ + Q+PDFL ELI+EVEG+ ++GEVLE +P ED+QEWL DA+AQGT+ + DEGP D VPHKDVGQDKPFKF
Sbjct:    1 MWENGWKDIVSIDFCNPVIEAMQSAHADKPGMEWKVMDARDMVEFETGSFDAVIDKGLTDSVMYNDKFSVMMAKVSYEVARVLKPGGVYLMTDYRDPERVQELFERDEWESGSLTQEGKITSKVHLFKGKRSSVEPQTPDFLEELIEEVEGD-VQGEVLEASPQEDSQEWLADAIAQGTITIPDEGPADEVPHKDVGQDKPFKF 203          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A835YJ55_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ55_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.860e-47
Identity = 87/211 (41.23%), Postives = 127/211 (60.19%), Query Frame = 1
Query:  379 SLGPDGREIDIIRHREAHSFAEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGAR--AGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDPERVQELFERDEWEGGSLTHEGKITPKVHLFKG 1005
            + G    + D    R+ +S  E+WD FY     G  E GE+YDWF G+ ++   L  H   AR  AG VL+LG GNSE+S +M+++GW   ++IDF KPVI+ M+  H DKPGM+W VMDARDM+   + S   VIDKG+ D++ ++D++   + K+  E ARVL+PGG Y+ T +  PE +  L   + W+   +   G +TP V L+ G
Sbjct:   10 TAGSAEEQRDYFLSRQQYSLREFWDAFYTPYDEGESEAGETYDWFLGYPKMREALLEHASHARNGAGTVLILGCGNSELSERMYDDGWTQQINIDFSKPVIDLMRSKHTDKPGMEWAVMDARDMSGVPDGSVQTVIDKGLIDALTHSDQYRDDIQKVVAESARVLRPGGSYICTSFNTPESLLPLLSNNAWQSEGVECRGNLTPTVLLYVG 220          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A6P5F2C5_ANACO (methyltransferase-like protein 13 isoform X2 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F2C5_ANACO)

HSP 1 Score: 123 bits (308), Expect = 1.580e-28
Identity = 72/175 (41.14%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  430 HSFAE--YWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDPE-RVQELFERDEW 945
            HS+ E  YWDD Y        +DG  +DW+  ++ L+   +L++   R+ R+L++G GNS +   M ++G++DI++ID    VIEAMQ+ + DKP +++  MD RDMA FE+ SFD VIDKG  DS+M          K+  E+ARVLK  GVY++  Y DP  R+  L   D W
Sbjct:   19 HSYGETAYWDDRYR-------KDGGPFDWYQKYAPLSPLFDLYL--RRSHRLLLVGCGNSVLGESMVDDGYQDIINIDISTVVIEAMQQKYKDKPALKYLKMDVRDMAGFESNSFDGVIDKGTLDSIMCGHNAHENATKMLEEVARVLKDKGVYILITYGDPSYRLCVLKNLDTW 184          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A6P5F2G5_ANACO (methyltransferase-like protein 13 n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F2G5_ANACO)

HSP 1 Score: 123 bits (309), Expect = 4.910e-28
Identity = 75/195 (38.46%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  370 RRSSLGPDGREIDIIRHREAHSFAE--YWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDPE-RVQELFERDEW 945
            R  +LG              HS+ E  YWDD Y        +DG  +DW+  ++ L+   +L++   R+ R+L++G GNS +   M ++G++DI++ID    VIEAMQ+ + DKP +++  MD RDMA FE+ SFD VIDKG  DS+M          K+  E+ARVLK  GVY++  Y DP  R+  L   D W
Sbjct:   20 RAMTLGGSSSSXXXXXSLGTHSYGETAYWDDRYR-------KDGGPFDWYQKYAPLSPLFDLYL--RRSHRLLLVGCGNSVLGESMVDDGYQDIINIDISTVVIEAMQQKYKDKPALKYLKMDVRDMAGFESNSFDGVIDKGTLDSIMCGHNAHENATKMLEEVARVLKDKGVYILITYGDPSYRLCVLKNLDMW 205          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A5J9U7X1_9POAL (Methyltransf_11 domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9U7X1_9POAL)

HSP 1 Score: 119 bits (299), Expect = 7.380e-27
Identity = 70/172 (40.70%), Postives = 104/172 (60.47%), Query Frame = 1
Query:  415 RHREAHSFAEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDP-ERVQEL 927
            R    +  A YWD  Y+ G + +  DGE +DW+  +S L   L  HV    + RVL+LG GNS +S  M ++G++DIV+ID    VIE M++ HA+   + +  MD RDM+ F++ESFD V+DKG  D++M  D      +K+  E+AR+L+P G+YL+  Y  P ER+  L
Sbjct:    6 RKSNDYGAAAYWDARYSSGSSPAGGDGEFFDWYQKYSALRPLLRAHV--PASSRVLMLGCGNSLLSEDMAKDGYQDIVNIDISSVVIEQMREKHAEIKQLTYMQMDVRDMSLFDDESFDCVLDKGTLDAMMCADDTPHGASKMLAEVARLLRPRGIYLLITYGAPKERIPLL 175          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A7U2EU17_PHANO (Methyltransf_11 domain-containing protein n=1 Tax=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) TaxID=321614 RepID=A0A7U2EU17_PHANO)

HSP 1 Score: 115 bits (288), Expect = 8.440e-26
Identity = 68/182 (37.36%), Postives = 100/182 (54.95%), Query Frame = 1
Query:  439 AEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGAR-----AGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYN------DKFAIMMAKISYEIARVLKPGGVYLMTDYRDPERVQELFERD-EWE 948
            +E+WD+ YA   +    D  +++WF GFS L  + + H+  AR     +GR+L LGSG+S V   + E G+     +DF K V+E M   H+D+P ++WKV D RDM D E +S D   DKG  D+++Y       D+      +   E+ RVLK  GV+L   YR P  ++ +  RD EWE
Sbjct:   13 SEFWDERYAKADS----DKPTHEWFRGFSALEPFFDKHLFQARGNEGKSGRILHLGSGDSTVPYDLLERGYTHQTCVDFSKVVVELMAARHSDRPQVEWKVGDVRDMVDIEAKSIDVAFDKGTLDAMIYGSPWSPPDEVLENSGRYMKEVQRVLKDDGVFLYVTYRQPHFIKPILNRDSEWE 190          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: D8RED7_SELML (Methyltransf_11 domain-containing protein n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RED7_SELML)

HSP 1 Score: 115 bits (288), Expect = 1.570e-25
Identity = 61/162 (37.65%), Postives = 99/162 (61.11%), Query Frame = 1
Query:  424 EAHSFAEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDP 909
            +A+  A YWD+ Y         D  ++DW+  ++ L+  L  +V   +  R+L++G GN+ +S  M  +G+++IV+ID    VIEAMQ+ +   P +++  MD RD++ FE+ SFDAV+DKGM DS++     AI  AK+  E++RVL+ G  Y++  Y DP
Sbjct:    7 QAYGEASYWDNRYK-------NDSSTFDWYQRYAGLSALLQKYV--PKTSRILMVGCGNAAISEDMVNDGYQEIVNIDISTVVIEAMQQKYQHVPQLKYMTMDVRDLSTFEDGSFDAVLDKGMLDSLLCGTSAAISAAKMLEEVSRVLRGGSSYILVTYGDP 159          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: A0A2T7EE87_9POAL (Methyltransf_11 domain-containing protein n=6 Tax=Panicum TaxID=4539 RepID=A0A2T7EE87_9POAL)

HSP 1 Score: 114 bits (286), Expect = 4.260e-25
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 1
Query:  439 AEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDP-ERVQEL 927
            A YWD  Y+ G   S   G+ +DW+  ++ L   L   +    A RVL+LG GNS +S  M ++G+KDIV+ID    VIE M++ H + P + +  MD RDM  F +ESFD V+DKG  D++M  D      +K+  E+AR+L+P G+YL+  Y  P ERV  L
Sbjct:   14 AAYWDARYSSGSPASGGGGKFFDWYQTYAALRPLLRARI--PAASRVLMLGCGNSLLSEDMAKDGYKDIVNIDISSVVIEQMREKHKEIPQLTYMQMDVRDMTFFADESFDCVLDKGTLDAMMCADDAPDGASKMLAEVARLLRPHGIYLLITYGAPKERVPIL 175          
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Match: UPI001CB9427A (eEF1A lysine and N-terminal methyltransferase n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9427A)

HSP 1 Score: 113 bits (283), Expect = 5.490e-25
Identity = 73/177 (41.24%), Postives = 102/177 (57.63%), Query Frame = 1
Query:  424 EAHSFAEYWDDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGR--VLVLGSGNSEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMADFENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDYRDPE-RVQELFERDEW 945
            +A+  A YWD  YA       E   ++DW+  +  L+  L+L++  + + R  VLV+G GNS  S  M ++G+ DIV+ID    VIEAMQK ++D P +++  MD RDM  FEN SFDAVIDKG  DS++         AK+  E+ RVLK  GVY++  Y  P  R+  L E   W
Sbjct:    3 QAYGEAWYWDKRYA------KESTTTFDWYQKYESLSPLLHLYIPTSTSTRRRVLVVGCGNSAFSEGMSKDGYTDIVNIDISSVVIEAMQKKYSDSPHLKYIEMDVRDMKAFENNSFDAVIDKGTLDSLLCGLNSKQNAAKMLEEVDRVLKKEGVYILITYGIPAYRICLLKESHSW 173          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHX6_9PHAE4.660e-18674.72Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7G816_ECTSI1.200e-11481.37Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A835YJ55_9STRA1.860e-4741.23S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A6P5F2C5_ANACO1.580e-2841.14methyltransferase-like protein 13 isoform X2 n=1 T... [more]
A0A6P5F2G5_ANACO4.910e-2838.46methyltransferase-like protein 13 n=3 Tax=Ananas c... [more]
A0A5J9U7X1_9POAL7.380e-2740.70Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7U2EU17_PHANO8.440e-2637.36Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D8RED7_SELML1.570e-2537.65Methyltransf_11 domain-containing protein n=5 Tax=... [more]
A0A2T7EE87_9POAL4.260e-2541.46Methyltransf_11 domain-containing protein n=6 Tax=... [more]
UPI001CB9427A5.490e-2541.24eEF1A lysine and N-terminal methyltransferase n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:142041..147434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G816
PFAMsMethyltransf_11
Model size1708
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue1.32e-118
EggNOG OGsKOG2352@1|root,KOG2352@2759|Eukaryota
Ec32 ortholog descriptionMethyltransferase type 11
Ec32 orthologEc-06_009800.1
Descriptionmethyltransferase activity
Cds size1080
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.37.1prot_P-littoralis_Contig191.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 142191..146956 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.6610973-UTR-P-littoralis_Contig191:142040..1421901680789918.6610973-UTR-P-littoralis_Contig191:142040..142190Pylaiella littoralis U1_48UTRP-littoralis_Contig191 142041..142190 +
1680789918.7462258-UTR-P-littoralis_Contig191:146956..1474341680789918.7462258-UTR-P-littoralis_Contig191:146956..147434Pylaiella littoralis U1_48UTRP-littoralis_Contig191 146957..147434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.6731699-CDS-P-littoralis_Contig191:142190..1425071680789918.6731699-CDS-P-littoralis_Contig191:142190..142507Pylaiella littoralis U1_48CDSP-littoralis_Contig191 142191..142507 +
1680789918.6847754-CDS-P-littoralis_Contig191:143573..1437441680789918.6847754-CDS-P-littoralis_Contig191:143573..143744Pylaiella littoralis U1_48CDSP-littoralis_Contig191 143574..143744 +
1680789918.694015-CDS-P-littoralis_Contig191:144319..1444041680789918.694015-CDS-P-littoralis_Contig191:144319..144404Pylaiella littoralis U1_48CDSP-littoralis_Contig191 144320..144404 +
1680789918.711118-CDS-P-littoralis_Contig191:144917..1450341680789918.711118-CDS-P-littoralis_Contig191:144917..145034Pylaiella littoralis U1_48CDSP-littoralis_Contig191 144918..145034 +
1680789918.7245955-CDS-P-littoralis_Contig191:145921..1460431680789918.7245955-CDS-P-littoralis_Contig191:145921..146043Pylaiella littoralis U1_48CDSP-littoralis_Contig191 145922..146043 +
1680789918.733525-CDS-P-littoralis_Contig191:146688..1469561680789918.733525-CDS-P-littoralis_Contig191:146688..146956Pylaiella littoralis U1_48CDSP-littoralis_Contig191 146689..146956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.37.1

>prot_P-littoralis_Contig191.37.1 ID=prot_P-littoralis_Contig191.37.1|Name=mRNA_P-littoralis_Contig191.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=360bp
MAPSIDFCLPAVLAAITCAEGFLLPASVSQSGNTDRSSGCNGLRTPSAAA
AAATSARRLTSSAIHQQRPRRCLRRSSLGPDGREIDIIRHREAHSFAEYW
DDFYAGGGAGSLEDGESYDWFFGFSRLAVYLNLHVGGARAGRVLVLGSGN
SEVSPKMWENGWKDIVSIDFCKPVIEAMQKAHADKPGMQWKVMDARDMAD
FENESFDAVIDKGMTDSVMYNDKFAIMMAKISYEIARVLKPGGVYLMTDY
RDPERVQELFERDEWEGGSLTHEGKITPKVHLFKGKRSATKLQSPDFLGE
LIQEVEGEALEGEVLEGTPEDNQEWLTDAVAQGTLNVLDEGPGDIVPHKD
VGQDKPFKF*
back to top

mRNA from alignment at P-littoralis_Contig191:142041..147434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.37.1 ID=mRNA_P-littoralis_Contig191.37.1|Name=mRNA_P-littoralis_Contig191.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5394bp|location=Sequence derived from alignment at P-littoralis_Contig191:142041..147434+ (Pylaiella littoralis U1_48)
AAAGTTGGCACCAGTCTGATTGTCCGACTTGGAATATCAGGCTTGGAAAA CGCTTTTCCAAGTCGAGAAATTCCAGCTGCCCATCTACCATAAGATTGGG CCTTAGTCTTGCCGCTGACTGTATCACAACCTACAGTAGTAACAGCAGCT ATGGCACCATCTATCGATTTCTGTTTGCCGGCCGTACTGGCAGCGATAAC GTGCGCTGAGGGGTTCCTCCTCCCAGCTTCAGTGTCTCAGAGCGGTAATA CAGACCGAAGCAGCGGTTGCAATGGTCTGCGGACACCTTCAGCAGCGGCA GCAGCAGCAACTTCCGCCCGGAGGTTGACTTCATCTGCGATACACCAACA ACGCCCTCGGCGATGCTTAAGGCGGAGTTCGTTGGGACCTGATGGAAGGG AAATCGATATCATCAGGCATCGAGAGGCCCACTCGTTTGCGGAGTACTGG GACGACTTTTACGCCGGGTGAGCAACTTTATCTGTGCATATTCATATTTG AACAACGATAACTCCTGTGTTCGTTCGGCAGAGACACACGTGTCTTGAAC CCTCTCTCCGACCTGTCGATCCTTTTTGTAGAGTATTTCAAGGCGCTCCG CCGACGACACATCACAGCAGTACAGCAATCTCAGTCTTGCGGCATCTGAT AACAGATGCAACCCCCGCTGTAATCATATTTACATGTTCGAAACAACAGC GGAAAATGATGGAATTATCTAATCGTCAGGAGGACATCGCATCATTCCCC TCGATCGATCGCATTTTGGCTCTGCAGTCTCGTCTCATTTGTTGTGGCGG TCAAAACTGACGTGGACAGCTCAAATTTGAACGGAGCTATCGTAGAAGCC AGAGCGGGTATAGCAGTCCGTGAGACAGTTCACTTATGTATCACCGATGA ATTTAAGTACCTGGTACTTATCAAGACCATAATCGTTGGTAGGCTTCACC CTTGGTAGGCTTTGCTTACACTCCTCGTCGTTTTGCTCTAAAGACCAAGC CCAAGGTTACGCCGCATTCGACAGATCTTACCTCTCTCATCAGAAGGCGT GTGATACCCAATTATCCTTCCTAAATTCCTGAAACAGCATAATGATATGT CTGTTTCATTTTTTGTCGGCGTTTTTTTCGTATCGTGAAGAGGCTCAGCA CTCTTGTGACCAACGGGCGGGACTTATTCGATGAGCCTATGGGAGAAGAA TTGAAGTCGCCCATCGCTTCCAGAAGTCAAGATCCTACAGGATCATAACT TCAATGAATCGTAGATATACACCGAACACGCCGTTCGAATAACTGCAGAT CTGATCTGCTTAGTTCACAAGTCATTTTCGTCTCATTGTCCTGTTCCTGA ACTCGTCATTGCCGCCGGTACGGCTCTGGTGGGATCTGCCCGGCGGTCCT TCCGCCCCTTCAGGCCCCGCCCCCACACGAATGTGATCAAACTGCTGTTT TACCTGCCTTGTGCCGACCCGCATACCACTGATGTGCTCTGCCTGTGATG CATGCTTCTTCACGACGCGTTCGCCGGAAGCAGGGGGGGGGCGGGTAGTC TAGAGGACGGAGAGAGCTACGATTGGTTCTTCGGCTTCTCGAGACTGGCG GTGTACCTGAACCTTCACGTCGGTGGGGCGAGGGCTGGACGCGTGCTGGT GCTGGGGAGCGGCAACTCGGAAGTGTCGCCCAAGATGTGGGAGAACGGAT GGAAGTGAGTGAACCACCTGGGTCGTGAAAAAAGAAAATATCACTCCCCG CGGGCCAATGTCGAGAGTTCGATATGTCCGCAGCAACAAGAGTGACAGAT CCAATCCTAGGGGCATTGGAAAGAGGTTTCCGACAGTGTATTCTGTGTGG TGTCGATACCCTGACACGGTTGGTGTTGAAAATCGAAGATATTTCTAGGG CACACCTTCAAACCTAGCATTGAAGAACGGTTTTTACGTGAGTGATCGAA ATTTGATTCGGAAGTCGGCTAGAGAAAGAAGGGCAGAATGCTGCTCGCGC CGAGAAATGAAGGCACGCAACGCAGAAGGAAGGTGAAGAAAACAACAGAA ATACTGCTGTGTGTTGACCTTGCTCTCCTGTGTGACCCCGGCTGACGAAA TAGTGTACAGATAAGATGGGATCGGAACACCCACACATATGCATACAGCC TTGGAAAAGGGAAAGTAGCCAGCCAAAAGCGGTGTCATCCTCCGTTCTTC AAAACCGCACGGGCTAATCCGAGACGTTTTTTTCCCACATGCCGCGTTGG CGTTCGTTGCTGTTGCTGTTGCATTACAGAGACATTGTCAGCATCGACTT CTGCAAACCCGTGATCGAGGCCATGCAGAAGGCGCATGCCGACAAGCCGG GAATGCAGTGGAAGGTGCGCCAGGCATTTTTTTCAGTTATTTCCCTCCCA TGTTTGGAAAAAAACTCGAACGGAAAACGATACTAGCGGCTCAGCTTGTA TAGTATGCTCGCGTGAAGTATTATTTCTCGCTAAACCCTCCTGCTGTTTC TACAAAACGAAGACAGCACCTTGAGGGTGTTTTTTTGTGCTTGTGAAACT CCTGAACGGCGGCGTAATGTTTTGTCTTAAGAGGTTAAACGAACGGTCGA AAAACATTACCGCAGCAGCAGAAATCTGATAGGGAAATTTCTGCACTTAT GTTCCTCCTCGTAAGGTGTTGTGTTTTCGGCCAAAGTTGCTCACGCCGTC ACGGCAAGGACTTGATAACATCCTGGTGAGTCCCTTCGCGAGCCGCTTCT TTGATGCCACATGACACCACTTTGTATGGAATCCAAAGAGCCCCTTGAGT CCCCTACCGCGAGGGCATACCTCCCTTACGTGTGGTCGTGATCGTCTTTC TGTTCCGCGTGTGTTGCTCTCTCGAAGGTTATGGATGCCAGGGATATGGC CGATTTTGAGAATGAATCGTTCGACGCCGTTATCGACAAGGGGATGACGG ATTCGGTCATGTACAACGATAAATTCGCGATCATGATGGCAAAGGTGAGC CATTCCATCATTGCCCCTGTGAGACGGTGATACGCTTAGAACCACTCCGT GAGCATTAGCCGTGGCTAGGATGGCAATCAGAACGTTCTGGGATGATAAC CCCGCCCTCTCCGTGTTGTGCATGCTCATGCTGCGTTCAAAACGTGAATA GACCCGTCACCTACGATGCCGTGTTTGTTGTTTTCATCATGAACGACGAA GGTGGTTTAGAGATCTGCTGAGCCGCAAAAGTACGACGACGATGCAACCC TTGAGCTAAAAACGGGGCAGGAAAGGTCTACAGTCGTTTTGCGCCTGCTT CTTCTACGCGTTTTAAATTATTGTCGTTCGATTTCTTTTGTGAGGCTGGT TATACTGACGCGCCCAGCGCCACACTGACCCACCGGAATCTGTGTTGCGT TTCAATTGAGGATAGGGGTAAAGCCGTCGGGCATCTGTACTGAAACTCTG TACAGTATAAGGACTTGGCTTTGGTCATCACCCGATGGTTTTTGCGAAGC AAGAGAGAAAGCCGGTCGTGTCTTGACAGTCGCCTCCGCCGTGTGTACCT ACAGCTTCTGGCCATGGACCACGTGCCCTCGTTCTGTAGAGCTAACATGT CAAGCCAGTGCACGTCATTTCACTCCCGTGCCCTTGAGTTTGGTTTCGAT TCCTGGAACGAAACCATGTTATGTCTCGTCGCTGTGTTGCATTCGACTGG CCGCCCCTGGTAAGCGGCTCCACACTTGTGTGTTGCGTCTCCGGCGCTCG AACTCTTCCCATCTTGCCAGCGCTCACTGATGACCGTCCCTCACACGCTC ATCCTGCCAGAGCTCACTGATGACCGTCCCTCACACGAATGCCGCACGTG TATATTTCACTCTGTACTGGCCGTCCTCAAGATATCGTATGAGATAGCCC GTGTGCTGAAGCCCGGAGGGGTGTACCTCATGACGGACTACCGAGACCCG GAAAGGGTACAGGAGCTGTTTGAGCGCGACGAGTGGGAAGGAGGCTCGCT AACGTGAGTGTGCATCTGTATCTACTATGCCGATGAGATCAAACGGTATC AATTTATTACTAGATTTCCCTCTTTTTCGAGACTGCCTCAGCCCCCCCCC CCCCCTATATGAGCTGCTGAACTTAACTGCAGCCCATGAAATTTCATCCC ACTGGACAAAAAATACAGAAATATACCACACATCCGTTTGTTTCGAGAGA TTGACTTGGGCTTTCGAAGAGCGCGTCGTTCGGACGAGTGCGTTCCTTAC CATTGTAGAGACTTTGACGGTGAAAAGCTCCTCAGGGTGGTCCTTTCCCG CCTGCGTTGGCCTGCGCCATAGTAGTAGTTATATCCTGGTGGACAGGAAC AACCGGGGTGATGTAATGGGGGAGCCGTGGTTGTGGTGGCCTACGCTTAG CGCCCACCTCGGCTTCGTAATATTGTGTTGACCCGCGTACATTCACTTGA CCTTACACCAGCCCGCGCTTGAAAACATGTTCCCTAGGTTTGTCTCCAAA AGACGAGCCTGCGATCCTCGCTGCATCCCTAGGCCGACAGCGGCGGTTTG TTAGTTTCCGTTTCATGTCCCCTTCTTCTTTTTTTTTCTGACCGGTTCGT CGTAATTTTTCGTGCTTCCCCGCCTGGTTCGCCGTGTGCTCTTCACAGGC ACGAAGGAAAAATCACCCCTAAGGTGCACCTCTTCAAGGGAAAACGCTCG GCGACAAAGCTGCAGTCACCCGACTTCTTGGGCGAGTTGATACAGGAGGT GGAGGGGGAAGCTCTCGAGGGGGAGGTCTTGGAAGGAACCCCAGAGGATA ATCAGGAGTGGCTGACAGACGCGGTCGCGCAGGGGACACTCAACGTACTA GACGAAGGGCCCGGTGACATCGTGCCACATAAAGACGTGGGGCAGGATAA ACCTTTCAAGTTTTAATCAGTCAATGCTTGATTGTATGTATTTGTCTGAC CCGGGCTCTCTGGGGTTTCGATTTCGATGGCGGAGGGATGAGGACAGACG GTCGCGGGCAGGTCGGTAGTCGGGATGAATGATTTGTCGATATTTTGTAT TTTCTAATTTGTGTGGGCTGTCGTGACAGTGGTATCGCTTTGTTGGCAGC AGAGGGCGGTTGTATACTTGTAACAAGGTGGTTTTCCACCGCCTCGTTTT CCGTGAGGTGCTTTTTGTATTTCGTACCTCGCTGTTGGGGCCGAGGGGCC AGGACTTGACCCCTACCAGTACCGCCTAGTAACGTGTTGCAGCAGCTGCA CATAGATCTATAGACTGGGGCTTAGGAAGTACGCAAGCCAGACAAATCTC CGCGCATACCAGCAGGCAGCCAAGAGAATCAGTGCCGAGAATAACACAAG GAAGACCGATCAAAATCAATGCTCTGGAACATGCTACACGCACA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:142041..147434+

>mRNA_P-littoralis_Contig191.37.1 ID=mRNA_P-littoralis_Contig191.37.1|Name=mRNA_P-littoralis_Contig191.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1080bp|location=Sequence derived from alignment at P-littoralis_Contig191:142041..147434+ (Pylaiella littoralis U1_48)
ATGGCACCATCTATCGATTTCTGTTTGCCGGCCGTACTGGCAGCGATAAC
GTGCGCTGAGGGGTTCCTCCTCCCAGCTTCAGTGTCTCAGAGCGGTAATA
CAGACCGAAGCAGCGGTTGCAATGGTCTGCGGACACCTTCAGCAGCGGCA
GCAGCAGCAACTTCCGCCCGGAGGTTGACTTCATCTGCGATACACCAACA
ACGCCCTCGGCGATGCTTAAGGCGGAGTTCGTTGGGACCTGATGGAAGGG
AAATCGATATCATCAGGCATCGAGAGGCCCACTCGTTTGCGGAGTACTGG
GACGACTTTTACGCCGGGGGGGGGGCGGGTAGTCTAGAGGACGGAGAGAG
CTACGATTGGTTCTTCGGCTTCTCGAGACTGGCGGTGTACCTGAACCTTC
ACGTCGGTGGGGCGAGGGCTGGACGCGTGCTGGTGCTGGGGAGCGGCAAC
TCGGAAGTGTCGCCCAAGATGTGGGAGAACGGATGGAAAGACATTGTCAG
CATCGACTTCTGCAAACCCGTGATCGAGGCCATGCAGAAGGCGCATGCCG
ACAAGCCGGGAATGCAGTGGAAGGTTATGGATGCCAGGGATATGGCCGAT
TTTGAGAATGAATCGTTCGACGCCGTTATCGACAAGGGGATGACGGATTC
GGTCATGTACAACGATAAATTCGCGATCATGATGGCAAAGATATCGTATG
AGATAGCCCGTGTGCTGAAGCCCGGAGGGGTGTACCTCATGACGGACTAC
CGAGACCCGGAAAGGGTACAGGAGCTGTTTGAGCGCGACGAGTGGGAAGG
AGGCTCGCTAACGCACGAAGGAAAAATCACCCCTAAGGTGCACCTCTTCA
AGGGAAAACGCTCGGCGACAAAGCTGCAGTCACCCGACTTCTTGGGCGAG
TTGATACAGGAGGTGGAGGGGGAAGCTCTCGAGGGGGAGGTCTTGGAAGG
AACCCCAGAGGATAATCAGGAGTGGCTGACAGACGCGGTCGCGCAGGGGA
CACTCAACGTACTAGACGAAGGGCCCGGTGACATCGTGCCACATAAAGAC
GTGGGGCAGGATAAACCTTTCAAGTTTTAA
back to top