mRNA_P-littoralis_Contig191.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.36.1
Unique NamemRNA_P-littoralis_Contig191.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig191.36.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.910e-28
Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 VLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQ 219
            V +RGDALFNGRLDWLG LWA VKGL PT  LI+A W G+VDG AA+ HRKADTK ATAFTL RFA W  RLQ
Sbjct:  127 VHKRGDALFNGRLDWLGELWAVVKGLQPTADLILARWKGHVDGTAAVSHRKADTKAATAFTLARFADWPGRLQ 199
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BLAST of mRNA_P-littoralis_Contig191.36.1 vs. uniprot
Match: A0A6H5KFA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFA5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.070e-28
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 VLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQ 219
            V ER D LF  GR  WLGPLW +VK LPPTT LI   W G+VDG+AALEHRKADTK ATAFTLTRFAGW  RL+
Sbjct:   46 VWERVDPLFFEGRRRWLGPLWKKVKDLPPTTRLIPDAWNGHVDGVAALEHRKADTKAATAFTLTRFAGWEGRLR 119
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BLAST of mRNA_P-littoralis_Contig191.36.1 vs. uniprot
Match: A0A6H5K4F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 7.530e-21
Identity = 47/74 (63.51%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 VLERGDALF-NGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHRKADTKTATAFTLTRFAGWGERLQ 219
            V ER D LF  GR  WLGPLW +V+ L PTT LI   W G+VDG+AA EHRKADTK ATA TLT  AGW  RL+
Sbjct:  201 VWERVDPLFFEGRRRWLGPLWKKVEDLAPTTRLISDAWNGHVDGVAAFEHRKADTKAATASTLTLNAGWEGRLR 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE2.910e-2873.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFA5_9PHAE3.070e-2871.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4F6_9PHAE7.530e-2163.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:139262..139485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size226
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.63518-CDS-P-littoralis_Contig191:139263..1394851680789918.63518-CDS-P-littoralis_Contig191:139263..139485Pylaiella littoralis U1_48CDSP-littoralis_Contig191 139264..139485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.36.1prot_P-littoralis_Contig191.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 139264..139485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.36.1

>prot_P-littoralis_Contig191.36.1 ID=prot_P-littoralis_Contig191.36.1|Name=mRNA_P-littoralis_Contig191.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
VLERGDALFNGRLDWLGPLWAEVKGLPPTTHLIVACWTGYVDGLAALEHR
KADTKTATAFTLTRFAGWGERLQT
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mRNA from alignment at P-littoralis_Contig191:139262..139485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.36.1 ID=mRNA_P-littoralis_Contig191.36.1|Name=mRNA_P-littoralis_Contig191.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=224bp|location=Sequence derived from alignment at P-littoralis_Contig191:139262..139485- (Pylaiella littoralis U1_48)
GTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTAGG
TCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGATTG
TCGCGTGTTGGACGGGCTATGTGGACGGACTCGCCGCCCTGGAACACCGC
AAGGCTGATACTAAGACGGCAACAGCGTTCACCTTAACCCGTTTTGCTGG
CTGGGGGGAGAGACTCCAAACCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig191:139262..139485-

>mRNA_P-littoralis_Contig191.36.1 ID=mRNA_P-littoralis_Contig191.36.1|Name=mRNA_P-littoralis_Contig191.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig191:139262..139485- (Pylaiella littoralis U1_48)
GTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTAGG
TCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGATTG
TCGCGTGTTGGACGGGCTATGTGGACGGACTCGCCGCCCTGGAACACCGC
AAGGCTGATACTAAGACGGCAACAGCGTTCACCTTAACCCGTTTTGCTGG
CTGGGGGGAGAGACTCCAAACC
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