mRNA_P-littoralis_Contig191.23.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.23.2
Unique NamemRNA_P-littoralis_Contig191.23.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig191.23.2 vs. uniprot
Match: A0A6H5KJQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 7.380e-43
Identity = 116/204 (56.86%), Postives = 133/204 (65.20%), Query Frame = 1 
Query:   76 MTQFLRAVSEGRMEDALALSETILTFEPYNAIILDYQATLAQYINNERELDAQEGDVADDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDKPE--GEQGAVVAGPSNSNARVRFEMISRQGSEGDDQELQRLGGLLRELREKRAAESMKTASRWDEEKFAASRREVEDILWKFLPEEAKQAAQKRGQDAAPDE 681
            MTQFLRAVSE RME ALAL++TIL FEP NAIILDYQATLAQYINNEREL +   + AD    XXXXXXXXXXXXXXX                    +    E  GE   V   P         +  SRQGS  D QELQRLGG+LR+LR+ R A S +  SRWDE+KFAAS+REVE +L KFLP+ A+QAA+KR  D APD+
Sbjct:    1 MTQFLRAVSENRMEQALALAQTILKFEPRNAIILDYQATLAQYINNERELASVREEDADXXXXXXXXXXXXXXXXXXXGNAADVSSSTATGSDDGSTEEASAEEISGEDKDVAGAPRGDAPCQVAQKASRQGSVHDKQELQRLGGVLRDLRKTREARSQEIESRWDEDKFAASQREVEAVLRKFLPDAARQAAEKRAADGAPDQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.23.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJQ9_9PHAE7.380e-4356.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:125129..128800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1096
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_009810.1
Cds size705
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.23.2prot_P-littoralis_Contig191.23.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 125520..128800 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.2473907-UTR-P-littoralis_Contig191:125128..1255191680789918.2473907-UTR-P-littoralis_Contig191:125128..125519Pylaiella littoralis U1_48UTRP-littoralis_Contig191 125129..125519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.2601528-CDS-P-littoralis_Contig191:125519..1256311680789918.2601528-CDS-P-littoralis_Contig191:125519..125631Pylaiella littoralis U1_48CDSP-littoralis_Contig191 125520..125631 -
1680789918.2708406-CDS-P-littoralis_Contig191:126443..1265861680789918.2708406-CDS-P-littoralis_Contig191:126443..126586Pylaiella littoralis U1_48CDSP-littoralis_Contig191 126444..126586 -
1680789918.2806902-CDS-P-littoralis_Contig191:126942..1270461680789918.2806902-CDS-P-littoralis_Contig191:126942..127046Pylaiella littoralis U1_48CDSP-littoralis_Contig191 126943..127046 -
1680789918.291164-CDS-P-littoralis_Contig191:127468..1276001680789918.291164-CDS-P-littoralis_Contig191:127468..127600Pylaiella littoralis U1_48CDSP-littoralis_Contig191 127469..127600 -
1680789918.3044581-CDS-P-littoralis_Contig191:127886..1279581680789918.3044581-CDS-P-littoralis_Contig191:127886..127958Pylaiella littoralis U1_48CDSP-littoralis_Contig191 127887..127958 -
1680789918.3158233-CDS-P-littoralis_Contig191:128658..1288001680789918.3158233-CDS-P-littoralis_Contig191:128658..128800Pylaiella littoralis U1_48CDSP-littoralis_Contig191 128659..128800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.23.2

>prot_P-littoralis_Contig191.23.2 ID=prot_P-littoralis_Contig191.23.2|Name=mRNA_P-littoralis_Contig191.23.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=235bp
MPREDIAPIAEAKQTEESPRAPLRLMTQFLRAVSEGRMEDALALSETILT
FEPYNAIILDYQATLAQYINNERELDAQEGDVADDASGDDDDNAAADDDD
GSSAEEESPSSSTGTHASTEEASDDDKPEGEQGAVVAGPSNSNARVRFEM
ISRQGSEGDDQELQRLGGLLRELREKRAAESMKTASRWDEEKFAASRREV
EDILWKFLPEEAKQAAQKRGQDAAPDEHSRAHHK*
back to top

mRNA from alignment at P-littoralis_Contig191:125129..128800-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.23.2 ID=mRNA_P-littoralis_Contig191.23.2|Name=mRNA_P-littoralis_Contig191.23.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3672bp|location=Sequence derived from alignment at P-littoralis_Contig191:125129..128800- (Pylaiella littoralis U1_48)
ATGCCTCGCGAAGATATTGCCCCGATTGCGGAGGCCAAGCAGACTGAGGA
ATCTCCTCGGGCTCCTCTCCGACTCATGACCCAGTTCTTGAGAGCGGTGT
CTGAAGGCCGTATGGAAGACGCGCTGGCGCTTTCAGAAACAAGTACGAAG
TACGTATTACAGCGGTGGAGATGTTGGTGTTGAAAGAAAGATATATCCAG
GTTCGGCGGTGCAAACCACTGAAAGAAAAAGTGTGAACAGGCTTAGAAAA
GCCAGAACGAACGCAAATTTTCAAAATTTCAAATTTCAAATTTTCGAGTG
ACCGAAACAAACTTCTTCGTGAAATTAGAATACAAGCAGATGTTCGTTCG
TAAATAAGTTCCATCCAGCGATCCGCCAGACAAGGTCAAGAGGATACATG
TACACCCGTGAGCCTTTTTAGTTCGGGGGCAGTCCGGCTGGGTTTCCCAG
GAACTGAAAGCATTCTGTAGCGATTTCGACGTTATCTGATGAGCTTTCCT
GCGTTCTATTTACACCGTGAAACCTTGAGAGCATTTATTCATCTAGCTGA
TCCAATAGACAGATCTTTTGCACTTCGGAGTACTCCGTACTATTTCTGTG
TCGATCACACTCTGAACGCACAAGGCCATTGTGTGTTTGTTGTCATCCCA
TCTCTTCTGGACACCAGTCTGTACCACTTCAGGGAGAAGTTGGCGAACTA
GCCGGGGTCTCACAGGAGGAAAAAGTCAACACACTTGTTTTTTTGTGTAC
TACTTTCCGGCACAGTGCATGTTTACCCCCCTTAGCTTACAGCGCATCGT
CGATACCCGCCCCACCCGCGTGCGCTTCGGCCGCAACGACAGTCCTGACG
TTTGAGCCTTACAATGCCATAATCTTGGACTACCAGGCTACATTGGCGCA
GTACATCAACAATGGTGAGACTCTCAACCACAGGCGTCTTGCTGTCCTCT
TCTTCTGGAACATTTTCGATTGGAACAATAAAATAAGAGATTCCTAATAA
TATCGTCATCGTCCCCAGTCGAACAAAACTGGCGTTGAAAATTCTTCCCG
CAATACACTGCGCGGCTTGTGAGGGTACTCGTGACTATTTTTGCCCAACT
TGATGAGCCACGACAAGAATGGCTCCTAAATGGGTTAAACGTGAGATGAA
CCACCAGACACACCCTGTTTTGCTTTATCGTGTTTCACACGGTGCCAAAG
AGCGCGAACTGGATGCTCAAGAGGGAGATGTTGCTGATGATGCTAGTGGT
GATGACGACGACAATGCTGCTGCTGATGATGATGATGGCAGCAGCGCGGA
AGAAGAATCGCCTTCATCATCAACGGGTACTCGTGGCCTGGTGTGGAATG
GGACTCGAATTGTCCATGGGTAGCGACTTTATCTCCTCGTTTGCTATATT
TGCAGCCAGAAGACAGCCTTTACTCCGCCTTGCCATTATCCCCTTCGTAC
GAGATGTTGACAGGAAGTGTCTCGCCACTGTGCACATCTCGTCGTGAACC
ATGACATCAGAAGAGAGGGTGGGGCATAACTGTAATGAGACTCGTCGTCC
GGAGTGTGAGGCCCCACGCGTGGCTGCACGCAATACAGCCTGCATCAAGT
GTTTTATGTACGAATTGCGCGCAGATTCAGCTGTGGTCTCACCGGTTTCT
CACTCTCTTTTTTGTCCGCACGTCGTTTCTACCATCCTATCCGTCATCAA
CTGTTGGTGTTGTTTGATGTAAAGTTAACTGCTGTCGTTCCATGCACAAC
GTAGACGCGTCAACAGAAGAAGCAAGCGATGACGATAAGCCAGAAGGGGA
GCAGGGGGCCGTGGTAGCCGGCCCTTCCAACAGCAACGCACGAGTAAGAT
TTGAAATGGTTTAGAACCTACAGCGCTTGAGTATGCCCTCCCTACGATAG
GACGTACTTTTCGGTTTGTATGTCGTCGTCGACAAGAGTAGGGAACATCA
TGTCGACGTAGTGGTTTTGTCGCTCCCAGTGATACCTTTGTACAGCAAAT
ACTCTTGGTCACCACGAACGAGGTGCATCCAGTTCTTCTGCAAAACCGTC
CATGCAAAGCTGAACCCTTTACTACAGTTAGGTAACACTTCAAGCGACTT
TAAAGCCTTGCGGGAAAAAGAGCTACGCTAGTACTGCGATGACGAAATTG
CACGCTGTGAAAGTCAATGAACGGGGTAAACTGACCGTATTCCCCATGTC
GTGTTGTGTAACAGATATCGCGACAAGGATCGGAGGGTGACGACCAGGAG
TTGCAGCGGCTTGGAGGTCTGCTCCGAGAATTGAGGGAGAAGAGGGCGGC
CGAAAGCATGAAAACGGCGTCTCGGTGGGACGAGGAAAAATTTGCTGCTA
GCCGGAGGTGTGACCATTTACTGCGTGCAATGGTCTTCATCCTGGCTGTA
ACCAACATTGCGTTGATCTATCTATCCACCATATTCGTCGGATGGACGTA
TCCACTAGACCACTCAGTCAGCCGTTGACTTAGTGGTCTAGTGGATACGC
GCATCTGTCGTTAACATACCACGTACTACTCCATTAGTTCGCAGTGTACG
CCCTTCGGTGTTGTGTGCATCGCCACGGAAGTACCTGCGCAAAGGTTAGT
CGTTCCTTTTGTTTGTGGGGAAAATTCTTGAGCCAGGTGAAGTAGTAGCT
CTTTCTGTGCAGAATAACTGATCTGATGACCACCCTTGATATGTCTCTTG
CTGCTTGTTATACATGTGGTAAAAACCAAAAGTCGGCACTCAGCTTCGAT
GATGTTGACAACAGCGCATTCGTTGCCTCATGGTCCAGATCATCACCTAG
AGCCAGACACGAAAGCGTCAGGGATACACTATCAGACAGATTGTTTTTTT
GTGCAACGAAATACTGCGCGCCAGGAACGACCCGGATCCGCGGCTTCAAT
CTCTGGCGTTCGATTGAAGTAAGGCCCCTCGTAAGGACCAAACCCTTTCT
ATTATGCTGCAGGCTGACCTATCTCTCTCGTAGGACAAAATCAATCGTAG
ATCTTATCGCCACTGGGTCGGGGCCGGCACTCCGGGGGTGTGATAATTAA
TGATGAACATACGACACGTTCAACTACAGCACTAGTATCATTTCGTGCAC
TTTTTATGCAGTAGTCGTGACACCTGGTGCAACTGGTGTAAAACTAACGG
CCCCACGATCTCGCCGCAGGGAAGTAGAGGATATTCTGTGGAAATTCCTA
CCTGAGGAAGCGAAGCAAGCAGCTCAAAAGCGAGGACAAGATGCCGCACC
GGATGAACATAGCAGGGCACATCACAAGTAGCCGTTGAGTTTTTTCTTGT
CGCACAAGGCGGGGCAAACAGCCCAACGAGAGATGAGAGAGCTTCCGGTC
TTGATTTGCTCTCACCAGGCGGACATAATATAGTTTTACATATTTGATAC
ATAAAGTTTGTTTAAACGTTTGAACCCTCTTTGGGTTTTAGATCGTGTTT
CGTAAGCAATTTTGCTGTGGACAGCACTACGTCGCACGTACCATATAATA
CGTGTGTGTCGGGTATTGTTGGTTCAGGCATTGCAACCAAGTATGTATCC
CAAGCAAAACTCGTCCCGTGCTTCCTACGGGCAAGATATGTCTTCGTGTG
TATGATGCGATGTAGTACTGAACACCTTCTTCGTATGTTATTATTGAATT
ATAATTTTAAAGCAATCCGACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:125129..128800-

>mRNA_P-littoralis_Contig191.23.2 ID=mRNA_P-littoralis_Contig191.23.2|Name=mRNA_P-littoralis_Contig191.23.2|organism=Pylaiella littoralis U1_48|type=CDS|length=705bp|location=Sequence derived from alignment at P-littoralis_Contig191:125129..128800- (Pylaiella littoralis U1_48)
ATGCCTCGCGAAGATATTGCCCCGATTGCGGAGGCCAAGCAGACTGAGGA
ATCTCCTCGGGCTCCTCTCCGACTCATGACCCAGTTCTTGAGAGCGGTGT
CTGAAGGCCGTATGGAAGACGCGCTGGCGCTTTCAGAAACAATCCTGACG
TTTGAGCCTTACAATGCCATAATCTTGGACTACCAGGCTACATTGGCGCA
GTACATCAACAATGAGCGCGAACTGGATGCTCAAGAGGGAGATGTTGCTG
ATGATGCTAGTGGTGATGACGACGACAATGCTGCTGCTGATGATGATGAT
GGCAGCAGCGCGGAAGAAGAATCGCCTTCATCATCAACGGGTACTCACGC
GTCAACAGAAGAAGCAAGCGATGACGATAAGCCAGAAGGGGAGCAGGGGG
CCGTGGTAGCCGGCCCTTCCAACAGCAACGCACGAGTAAGATTTGAAATG
ATATCGCGACAAGGATCGGAGGGTGACGACCAGGAGTTGCAGCGGCTTGG
AGGTCTGCTCCGAGAATTGAGGGAGAAGAGGGCGGCCGAAAGCATGAAAA
CGGCGTCTCGGTGGGACGAGGAAAAATTTGCTGCTAGCCGGAGGGAAGTA
GAGGATATTCTGTGGAAATTCCTACCTGAGGAAGCGAAGCAAGCAGCTCA
AAAGCGAGGACAAGATGCCGCACCGGATGAACATAGCAGGGCACATCACA
AGTAG
back to top