mRNA_P-littoralis_Contig190.125.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.125.1
Unique NamemRNA_P-littoralis_Contig190.125.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.150e-27
Identity = 78/214 (36.45%), Postives = 124/214 (57.94%), Query Frame = 3
Query:   18 CAAGELCHLSDRNITPE------LSCCGPRGGRLHRICGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEK-----RNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLVAEAST 626
            CA  ELC L +R +  +      L C    GGRLH ICGE +  GG +E++R+C  C A  +    ++ +    S  ++    G   +++ P  +   K     R RL  GQ+ E+L+LLD+K +  EI RR++   S +  I+  R  L++ AA+ + S TSKS + GDFP+++  V+ +IE+AR++ +P+T ATIE++G+A + KLVA  ST
Sbjct:    4 CADQELCKLPNRPLGEKDGHECRLGC----GGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLVAAPST 212          
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.180e-27
Identity = 74/208 (35.58%), Postives = 120/208 (57.69%), Query Frame = 3
Query:   18 CAAGELCHLSDRNITPE------LSCCGPRGGRLHRICGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEK-----RNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKL 608
            CA  ELC L +R +  +      L C    GGRLH ICGE +  GG +E++R+C  C A  +    ++ +    S  ++    G   +++ P  +   K     R RL  GQ+ E+L+LLD+K +  EI RR++   S +  I+  R  L++ AA+ + S TSKS + GDFP+++  V+ +IE+AR++ +P+T ATIE++G+A + KL
Sbjct:    4 CADQELCKLPNRPLGEKDGHECRLGC----GGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKL 206          
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.640e-21
Identity = 63/177 (35.59%), Postives = 106/177 (59.89%), Query Frame = 3
Query:  111 CGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEK-----RNRLTLGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLVAEAST 626
            CGE +  GG +E++R+C  C A  +    ++ +    S  ++    G   +++ P  +   K     R RL  GQ+ E+L+LLD+K +  EI RR++   S +  I+  R  L++ AA+ + S TSKS + GDFP+++  V+ +IE+AR++ +P+T ATIE++G+A + KLVA  ST
Sbjct:   16 CGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTHAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLVAAPST 191          
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5K1H9_9PHAE (HTH psq-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.910e-15
Identity = 67/176 (38.07%), Postives = 93/176 (52.84%), Query Frame = 3
Query:   12 MSCAAGELCHLSDRN-ITPE-LSCCGPRGGRLHRICGEIQNPGGDEEVNRICQSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGE----KRNRLTLGQKREILQLLDQKVSRTE--IMRRFNCGRSTVGDIRKDRATLQENAASTSWSETS-KSRKGGDFPKVDS 512
            M CAAGELC L D+  + P    C G  GGRLH +CGE Q+   + E  RIC +C A+ +  S+ +T           TE G   +Q   K          R R+ +G K EIL+LLD K +RT+  I  +FNCG  TV  ++ +RA ++  AA T  S T+ K+ +  DFP+  S
Sbjct:    1 MPCAAGELCQLPDQTPVAPHGHQCHGGCGGRLHGLCGE-QDQDAEYETARICFACIASKQKGSNASTA-GKGKRKGSATESGDTARQKKTKPANHPDMTGSRTRMDIGTKMEILRLLD-KGTRTQKSIAEQFNCGERTVRTVKAERAKIENQAAKTRSSATTRKNLRAMDFPEESS 173          
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Match: A0A6H5KX95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX95_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.770e-12
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  270 APKKR----KGEKRNRLTLGQKREILQLLDQK-VSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSWSETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLVAEAST 626
            APK+R    + + R RLTLGQK EIL LLDQK +SR EI   + C   TV     +R  L+  AAS++    SK R+   FP+VD  V+++I+     +IPV   TI ++G A K  L+A  +T
Sbjct:  125 APKRRACVDRSKPRARLTLGQKLEILDLLDQKKMSRVEIAAIYKCSDRTVSSCSVNRTILEAEAASSTRKLKSKGRRSAGFPEVDRRVLSLIKAFESSQIPVGRTTIASFGHAVKASLLAADAT 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KNH6_9PHAE2.150e-2736.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Y6_9PHAE7.180e-2735.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE1.640e-2135.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H9_9PHAE4.910e-1538.07HTH psq-type domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KX95_9PHAE3.770e-1241.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:391761..392619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FS63
PFAMsTransglut_core
Model size630
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.96e-05
EggNOG OGs2DPTS@1|root,2S6A9@2759|Eukaryota
DescriptionTransglutaminase-like superfamily
Cds size618
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789916.2779145-UTR-P-littoralis_Contig190:391760..3917711680789916.2779145-UTR-P-littoralis_Contig190:391760..391771Pylaiella littoralis U1_48UTRP-littoralis_Contig190 391761..391771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789916.2908502-CDS-P-littoralis_Contig190:391771..3922631680789916.2908502-CDS-P-littoralis_Contig190:391771..392263Pylaiella littoralis U1_48CDSP-littoralis_Contig190 391772..392263 +
1680789916.3028202-CDS-P-littoralis_Contig190:392493..3926191680789916.3028202-CDS-P-littoralis_Contig190:392493..392619Pylaiella littoralis U1_48CDSP-littoralis_Contig190 392494..392619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.125.1prot_P-littoralis_Contig190.125.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 391772..392619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.125.1

>prot_P-littoralis_Contig190.125.1 ID=prot_P-littoralis_Contig190.125.1|Name=mRNA_P-littoralis_Contig190.125.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MSCAAGELCHLSDRNITPELSCCGPRGGRLHRICGEIQNPGGDEEVNRIC
QSCAAANESASSTNTRTNTHSNAAKRTEGGGILQQSAPKKRKGEKRNRLT
LGQKREILQLLDQKVSRTEIMRRFNCGRSTVGDIRKDRATLQENAASTSW
SETSKSRKGGDFPKVDSLVMTMIEDARKLRIPVTGATIEAYGVAAKKKLV
AEASTT
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mRNA from alignment at P-littoralis_Contig190:391761..392619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.125.1 ID=mRNA_P-littoralis_Contig190.125.1|Name=mRNA_P-littoralis_Contig190.125.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=859bp|location=Sequence derived from alignment at P-littoralis_Contig190:391761..392619+ (Pylaiella littoralis U1_48)
GCCTGCACACCATGTCGTGTGCGGCAGGAGAATTATGCCACCTTAGTGAC AGGAATATCACCCCAGAACTTTCCTGCTGTGGCCCGCGCGGAGGTCGTCT GCATCGCATTTGCGGCGAGATACAAAATCCTGGAGGCGACGAGGAAGTCA ACCGTATCTGCCAGTCATGCGCTGCAGCAAATGAATCGGCCAGCAGTACC AACACCAGAACCAACACCCACTCGAATGCGGCCAAGCGTACAGAGGGAGG GGGTATTCTACAACAGAGCGCACCGAAAAAACGTAAAGGAGAGAAACGCA ACCGCCTGACACTGGGGCAAAAGCGAGAGATTCTTCAGCTTTTGGATCAA AAGGTCTCGCGGACAGAAATAATGCGGAGATTCAACTGCGGGCGCTCGAC TGTAGGAGACATCAGGAAGGACAGGGCGACCCTGCAGGAGAATGCCGCAA GCACTTCGTGGAGTGAAACATCCAAGAGCAGGAAAGGAGGAGATTTTCCT AAGGTGTGATGATAATTGTTTGTACTGTTTTTGTTTTTTGAGAAGGAAAG ATAAGTGAGCACAACGGCAGCTTTACAGTACTGTTTTGTACGGTAGAACG GCTTTGTGTCGCGTAGGACTGCTGTACTCAACCCACATATGCCGTGAGAA ATATGATGTCATTGCCGCAGTGGCACCCATTTGAGTCACGTTGTGCATAT TTCTTCGATGCCCTCCCTCTGCATCTCCAATAGGTGGATTCGCTGGTGAT GACGATGATCGAGGACGCCCGGAAGCTACGGATACCTGTCACGGGGGCTA CGATCGAGGCGTACGGGGTCGCCGCCAAGAAGAAGTTGGTAGCGGAAGCG TCAACCACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:391761..392619+

>mRNA_P-littoralis_Contig190.125.1 ID=mRNA_P-littoralis_Contig190.125.1|Name=mRNA_P-littoralis_Contig190.125.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig190:391761..392619+ (Pylaiella littoralis U1_48)
ATGTCGTGTGCGGCAGGAGAATTATGCCACCTTAGTGACAGGAATATCAC
CCCAGAACTTTCCTGCTGTGGCCCGCGCGGAGGTCGTCTGCATCGCATTT
GCGGCGAGATACAAAATCCTGGAGGCGACGAGGAAGTCAACCGTATCTGC
CAGTCATGCGCTGCAGCAAATGAATCGGCCAGCAGTACCAACACCAGAAC
CAACACCCACTCGAATGCGGCCAAGCGTACAGAGGGAGGGGGTATTCTAC
AACAGAGCGCACCGAAAAAACGTAAAGGAGAGAAACGCAACCGCCTGACA
CTGGGGCAAAAGCGAGAGATTCTTCAGCTTTTGGATCAAAAGGTCTCGCG
GACAGAAATAATGCGGAGATTCAACTGCGGGCGCTCGACTGTAGGAGACA
TCAGGAAGGACAGGGCGACCCTGCAGGAGAATGCCGCAAGCACTTCGTGG
AGTGAAACATCCAAGAGCAGGAAAGGAGGAGATTTTCCTAAGGTGGATTC
GCTGGTGATGACGATGATCGAGGACGCCCGGAAGCTACGGATACCTGTCA
CGGGGGCTACGATCGAGGCGTACGGGGTCGCCGCCAAGAAGAAGTTGGTA
GCGGAAGCGTCAACCACT
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