mRNA_P-littoralis_Contig190.119.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.119.1
Unique NamemRNA_P-littoralis_Contig190.119.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 6.140e-55
Identity = 91/125 (72.80%), Postives = 109/125 (87.20%), Query Frame = 2
Query:  128 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 502
            R  YAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+  QDV+E+ FGHMR GLGSHRN
Sbjct:  554 RSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRNCGQDVIEHCFGHMRQGLGSHRN 678          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 6.850e-48
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 2
Query:  137 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 502
            YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N R   QD+VE+R+GHM   LGSH N
Sbjct:   44 YARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLRCIGQDIVEHRYGHMCQCLGSHCN 163          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.250e-35
Identity = 67/108 (62.04%), Postives = 81/108 (75.00%), Query Frame = 2
Query:  137 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVEN 460
            YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N R+  Q   +N
Sbjct:  434 YARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQASQKN 541          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.250e-30
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 2
Query:  128 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 502
            R +  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++PR+  QD+ E+RF H+R  LG+HRN
Sbjct:   69 RSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRN 198          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.070e-30
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  170 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTP 415
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S L   P
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKISPLNMFP 84          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.840e-27
Identity = 57/120 (47.50%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  143 RKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 502
            RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+       L    R++ PR   QD++E+RF H+R G G+H+N
Sbjct:  483 RKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDED------LVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKN 594          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.060e-26
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  137 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFV 349
            YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   31 YARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.990e-20
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  170 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVS 352
            GYI SAD SKLE LMDILRFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.300e-16
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2
Query:  167 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS 313
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.280e-11
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  149 KGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLE----EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRN 502
            K +D +   ITS D   L+ L++IL +F+ W  +L         L D+     F+ + +W D+R++ILGFV+M RY+F DD  +     R   +++   +   D  E RFGH+R   G H+N
Sbjct:  502 KRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDL-----FLPDQTWDDLRLTILGFVAMTRYVFGDDD-WVTEGSRGRYKFMRDWNQASDTCEKRFGHIRANQGCHKN 617          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE6.140e-5572.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE6.850e-4867.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.250e-3562.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.250e-3048.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE6.070e-3065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.840e-2747.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE1.060e-2671.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE4.990e-2068.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE4.300e-1671.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE3.280e-1133.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:366960..368485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size504
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789916.2133338-CDS-P-littoralis_Contig190:366959..3670161680789916.2133338-CDS-P-littoralis_Contig190:366959..367016Pylaiella littoralis U1_48CDSP-littoralis_Contig190 366960..367016 -
1680789916.225587-CDS-P-littoralis_Contig190:367161..3674701680789916.225587-CDS-P-littoralis_Contig190:367161..367470Pylaiella littoralis U1_48CDSP-littoralis_Contig190 367162..367470 -
1680789916.2353587-CDS-P-littoralis_Contig190:368349..3684601680789916.2353587-CDS-P-littoralis_Contig190:368349..368460Pylaiella littoralis U1_48CDSP-littoralis_Contig190 368350..368460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789916.244802-UTR-P-littoralis_Contig190:368460..3684851680789916.244802-UTR-P-littoralis_Contig190:368460..368485Pylaiella littoralis U1_48UTRP-littoralis_Contig190 368461..368485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.119.1prot_P-littoralis_Contig190.119.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 366960..368460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.119.1

>prot_P-littoralis_Contig190.119.1 ID=prot_P-littoralis_Contig190.119.1|Name=mRNA_P-littoralis_Contig190.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRYARKKGLDKKAGY
ITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDI
RVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHM
RDGLGSHRN
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mRNA from alignment at P-littoralis_Contig190:366960..368485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.119.1 ID=mRNA_P-littoralis_Contig190.119.1|Name=mRNA_P-littoralis_Contig190.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1526bp|location=Sequence derived from alignment at P-littoralis_Contig190:366960..368485- (Pylaiella littoralis U1_48)
AACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATG AGGGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGT GCATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGTCTACTTCA CTATAGAGTCCGGGGTGGGGGTGGCGGAGCATCTCTCCACCGTGAAGTAA TGTTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTCC CGCGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTCG TACCTCCGAAGTCCGGAAATACCGGCAAACGCCCTGTCTCCCGGCGCAGC TCGTGACGGAGATTTTATTTTTTTTGAGCTTGATTGTTGAGTTTTCATGG GCTAAAAACCCGCCACACTTGTGTTCTAACGGGATTGAACAGATATCGTA ATTTGCCAATAAAATCAGTTATTATTGTTTTCAAATAAGTCTCTTAAACA GAGATATCGCACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTC GAGACAACTTTTCTTTCGATTTCAAAATAGAGTGCGGCAAACTATTCCTC TCATCATTGCCGCGAACTGTTTGTGTCGTTTTTGTGTGATAAATGTGCTG TGTAATGGCTGCAACGGATAGATTTCGTGACATATTATGCGGATGCCGGG GTGCGGAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGA ACGATTTTTGCAACAACTGATGCAATTAGCCAAAAACATAAATAACTCTG CAGCTATGTATCGACATATCTCGACGAGGCGATCACTAATATTGTTGTTT CACGTCCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTT TTTATATATATTTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTG TCTCTTCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGAAAC TTCGGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGG CTACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCT TGCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTG GGCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGA CATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCG AGGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTAC GTCAACCCGCGGCACCATTGCCAGGTATCATGTGCACACAGCGTACTATG TTGTGGCTGATTCTGCCTGTGGGTCTAGTGTGCGTCCGGTCCGACTCCGA GGAGCATTTTCTGAAATTGCGTCGACCTCTCCCCCCTATTTTCCACCACT TCGCCTTCTAACCCCACAGGATGTCGTGGAGAACCGCTTCGGGCACATGC GCGACGGCCTTGGGTCGCACAGAAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:366960..368485-

>mRNA_P-littoralis_Contig190.119.1 ID=mRNA_P-littoralis_Contig190.119.1|Name=mRNA_P-littoralis_Contig190.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig190:366960..368485- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGATACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTAC
ATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCG
TTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGCG
ACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATC
CGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGA
TGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTACGTCA
ACCCGCGGCACCATTGCCAGGATGTCGTGGAGAACCGCTTCGGGCACATG
CGCGACGGCCTTGGGTCGCACAGAAAC
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