mRNA_P-littoralis_Contig190.118.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig190.118.1
Unique Name	mRNA_P-littoralis_Contig190.118.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 8.320e-41
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 327
            TATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S  +PRA P VEG ASQESTPASAGQT  V N Y
Sbjct:   12 TATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.830e-37
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 327
            T  +AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D+P A PVV GSASQEST A AGQT  V NPY
Sbjct:  550 TCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.480e-35
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 1

Query:   37 DLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 327
            DLNR LHG SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +PRA P VEGSASQESTPASAGQ   V NPY
Sbjct:   89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 5.300e-30
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1

Query:    4 ATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 240
            A QAKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D+P
Sbjct:   13 AAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.910e-28
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 240
            TA QAKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS  +P
Sbjct:   77 TAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.310e-26
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRP 240
            TATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S  +P
Sbjct:   87 TATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.130e-25
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 327
            TA QAKER+ RGDLNR LHG SRAN NRNAR G D+I S YR+RIML +T+ E +  +R  S N+P AVL PRYIS +   AAPVVE        PA+ G +  +VNPY
Sbjct:  258 TAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.890e-24
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTP 288
            TA QAKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P A PV +GSA +   P
Sbjct:  680 TAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.320e-22
Identity = 60/109 (55.05%), Postives = 71/109 (65.14%), Query Frame = 1

Query:    1 TATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQESTPASAGQTIEVVNPY 327
            TA QAKER+ RGDLNR LHG SRAN NRNAR G D+  S YR RIML +T+   +  +R  S N+P AVL PRYIS +   A PVVE      S PA+ G +  +VNPY
Sbjct:  930 TAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVE-----TSVPAAQGSST-IVNPY 1032

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BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Match: A0A6H5K731_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K731_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.830e-20
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1

Query:   55 HGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVV 258
            HG SRANH +NAR+G+D+IASG R RIMLP+++ ERSATMR  S +  +AV+FPRYIS D+P A PVV
Sbjct:   43 HGVSRANHIKNARKGEDFIASGIRGRIMLPVSDAERSATMRAPSRDPVSAVMFPRYISIDKPHADPVV 110

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig190.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5K630_9PHAE	8.320e-41	68.81	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5X1_9PHAE	2.830e-37	68.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZP5_9PHAE	2.480e-35	68.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB63_9PHAE	5.300e-30	72.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS87_9PHAE	3.910e-28	70.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2C2_9PHAE	3.310e-26	67.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6I9_9PHAE	4.130e-25	56.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR14_9PHAE	7.890e-24	57.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FZI2_ECTSI	1.320e-22	55.05	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K731_9PHAE	8.830e-20	64.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig190	contig	P-littoralis_Contig190:366565..366956 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	392
Hectar predicted targeting category	other localisation
Exons	1
Cds size	201

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789916.15255-UTR-P-littoralis_Contig190:366564..366620	1680789916.15255-UTR-P-littoralis_Contig190:366564..366620	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig190 366565..366620 -
1680789916.1779673-UTR-P-littoralis_Contig190:366821..366956	1680789916.1779673-UTR-P-littoralis_Contig190:366821..366956	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig190 366822..366956 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789916.163106-CDS-P-littoralis_Contig190:366620..366821	1680789916.163106-CDS-P-littoralis_Contig190:366620..366821	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig190 366621..366821 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig190.118.1	prot_P-littoralis_Contig190.118.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig190 366621..366821 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig190:366565..366956-
coding sequence from alignment at P-littoralis_Contig190:366565..366956-

protein sequence of mRNA_P-littoralis_Contig190.118.1

>prot_P-littoralis_Contig190.118.1 ID=prot_P-littoralis_Contig190.118.1|Name=mRNA_P-littoralis_Contig190.118.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=67bp
MLPITEGERSATMRPSSWNTPAAVLFPRYISYDRPRAAPVVEGSASQEST
PASAGQTIEVVNPYTR*

mRNA from alignment at P-littoralis_Contig190:366565..366956-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig190.118.1 ID=mRNA_P-littoralis_Contig190.118.1|Name=mRNA_P-littoralis_Contig190.118.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=392bp|location=Sequence derived from alignment at P-littoralis_Contig190:366565..366956- (Pylaiella littoralis U1_48)
ACGGCTACGCAAGCGAAGGAGAGGGCAGCACGGGGGGACCTGAATCGTAG
TCTGCACGGGCGTTCCCGCGCAAACCACAATCGGAATGCGCGGAGAGGAC
AGGACTACATCGCGTCCGGATACCGGGCACGGATCATGCTTCCAATAACG
GAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTCCTGGAACACTCCCGC
AGCTGTTCTGTTCCCGCGGTACATCAGCTACGACAGACCCCGCGCGGCCC
CTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACGCCCGCCTCTGCAGGC
CAGACCATCGAGGTCGTCAACCCATACACTCGTTAATAGGTTTAGAAGGG
GTAGGGTGACAATGGAGAGAGAGGACGAGAAGATCGCAAGCC

Coding sequence (CDS) from alignment at P-littoralis_Contig190:366565..366956-

>mRNA_P-littoralis_Contig190.118.1 ID=mRNA_P-littoralis_Contig190.118.1|Name=mRNA_P-littoralis_Contig190.118.1|organism=Pylaiella littoralis U1_48|type=CDS|length=201bp|location=Sequence derived from alignment at P-littoralis_Contig190:366565..366956- (Pylaiella littoralis U1_48)
ATGCTTCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTC
CTGGAACACTCCCGCAGCTGTTCTGTTCCCGCGGTACATCAGCTACGACA
GACCCCGCGCGGCCCCTGTGGTAGAGGGTAGTGCATCCCAGGAGTCGACG
CCCGCCTCTGCAGGCCAGACCATCGAGGTCGTCAACCCATACACTCGTTA
A