mRNA_P-littoralis_Contig190.85.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.85.4
Unique NamemRNA_P-littoralis_Contig190.85.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig190.85.4 vs. uniprot
Match: D7G6V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V3_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.760e-50
Identity = 115/255 (45.10%), Postives = 160/255 (62.75%), Query Frame = 1 
Query:  346 KYEQAMRLLREYKNDVDMELSEAIAHRLNHPGHGAVDFDQPILSLGQLEEEIEIAMNGSVFEWM------------KRAGDGI-PQFVLPQLFKECRGKVEARYQVVKSFLFPPGGKVNKTMMREHMCNNHKVLFQLVRGEERGVVVQDILDKTSNHLLSHFSFTNDEIK-VIRGDISSLEMVVIKYLKIISNVYLQDPPATFMN-DCGDQQEFDRKRHSKPVGGEGIRTKQLCTVAFPAMIVDKTPRTLGYTLS 1065
            K ++A+RLL+EYK +VD ELS A+  RLN+PGH AVD DQPI +L +L+E     M+ S+ EW+             RAG GI PQ VLP+LF EC  +VE RY+VV+  L      V+K  M E+MCN+HK LF L+  E+  V +Q IL    ++L  H SF  D+I+ ++ G  S L+ V ++Y+ +++NV LQ PP TF   DCG  Q+FD + HS  VGG G+R  Q CT+ FPA++  +   T+GYTL+
Sbjct:  289 KKKKAVRLLQEYKEEVDRELSGAMVARLNNPGHDAVDLDQPIFNLEKLKEVTANVMDDSLNEWIARVNEWGDKTGGSRAGGGITPQAVLPRLFWECSDEVETRYRVVEDVL----RVVDKMKMHENMCNHHKDLFHLMPREDCNVAIQRILRGVRSYLADH-SFDPDDIQWLVTG--SGLDSVALQYMVVMANVRLQYPPVTFSTTDCGKVQQFDPELHSD-VGGGGVRPGQECTIVFPAIMTGEKRCTVGYTLT 535
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BLAST of mRNA_P-littoralis_Contig190.85.4 vs. uniprot
Match: D7FKB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB8_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.300e-40
Identity = 96/272 (35.29%), Postives = 140/272 (51.47%), Query Frame = 1 
Query:  367 LLREYKNDVDMELSEAIAHRLNHPGHGAVDFDQPILSLGQLEEEIEIAMNGSVFEWMKRAGD-----GIPQFVLPQLFKECRGKVEARY-QVVKSFLFPPGGKVNKTMMREHMCNNHKVLFQLVRGEERGVVVQDILDKTSNHLLSHFSFTNDEIKVIRGDISSLEMVVIKYLKIISNVYLQDPPATFMNDCG---------------------DQQEFDRKRHSKPVGGEGIRTKQLCTVAFPAMIVDKTPRTLGYTLSARSHQYGEVAKP 1101
            +++E ++ V+ E       +LN PGHGA +F QPIL LG L++ I+  M  +++ ++ +        GIPQ +LP+LF EC   V+  Y Q ++  LFP G K +  ++R+H+ NN++ LF L   E+R   VQ IL     HL +  +F ++ +  +  + + L+ +V KY +I+ +V LQ  PATF  DCG                       Q FD KRHS  V   G     LC V FPAM VD     + YTLS   HQ   VA P
Sbjct:   42 VIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGDLKDRIDDTMTNTLYAFIDKFNQFPKTAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLLTPSEKRDRTVQHILGNIGGHLRTQRTFADNGLNWVINE-TGLDALVHKYREIMVHVRLQPTPATFSTDCGMFLEVVKKKPWSLTVQQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGVRCNISYTLSLDRHQAELVATP 312
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BLAST of mRNA_P-littoralis_Contig190.85.4 vs. uniprot
Match: A0A6H5KQQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 5.590e-35
Identity = 84/247 (34.01%), Postives = 126/247 (51.01%), Query Frame = 1 
Query:  367 LLREYKNDVDMELSEAIAHRLNHPGHGAVDFDQPILSLGQLEEEIEIAMNGSVFEWMKRAGD-----GIPQFVLPQLFKECRGKVEARY-QVVKSFLFPPGGKVNKTMMREHMCNNHKVLFQLVRGEERGVVVQDILDKTSNHLLSHFSFTNDEIKVIRGDISSLEMVVIKYLKIISNVYLQDPPATFMNDCG--------------------DQQEFDRKRHSKPVGGEGIRTKQLCTVAFPAMIV 1029
            +++E ++ V+ E       +LN PGHGA +F QPIL LG L+  I+  M  +++ ++ +        GIPQ +LP+LF EC   V+  Y Q ++  LFP G K N  ++R+H+ NN++ LF L   E+R   VQ IL     HL +   F ++++  +  + + L+ +V+KY +I+ +V LQ  P TF  DCG                      Q FD K HS  V   G     LC V FP M V
Sbjct:   42 VIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGDLKGRIDDTMTNALYAFIDKFNQFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTNPALLRDHLSNNYQELFLLTPSEKRNRTVQQILGNIGGHLRTQRPFADNDLNWVINE-TGLDALVLKYREIMVHVRLQPTPTTFSADCGMFLEVVKKNKFFNSKAPTAAGVQPFDPKHHSSSVDAMGTIEGDLCVVVFPGMEV 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.85.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6V3_ECTSI2.760e-5045.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKB8_ECTSI2.300e-4035.29Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KQQ4_9PHAE5.590e-3534.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:323900..325410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1343
Hectar predicted targeting categoryother localisation
Exons2
Cds size1161
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789915.8671854-UTR-P-littoralis_Contig190:323899..3240551680789915.8671854-UTR-P-littoralis_Contig190:323899..324055Pylaiella littoralis U1_48UTRP-littoralis_Contig190 323900..324055 +
1680789915.9129193-UTR-P-littoralis_Contig190:325384..3254101680789915.9129193-UTR-P-littoralis_Contig190:325384..325410Pylaiella littoralis U1_48UTRP-littoralis_Contig190 325385..325410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789915.8850799-CDS-P-littoralis_Contig190:324055..3249881680789915.8850799-CDS-P-littoralis_Contig190:324055..324988Pylaiella littoralis U1_48CDSP-littoralis_Contig190 324056..324988 +
1680789915.9018157-CDS-P-littoralis_Contig190:325156..3253841680789915.9018157-CDS-P-littoralis_Contig190:325156..325384Pylaiella littoralis U1_48CDSP-littoralis_Contig190 325157..325384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.85.4prot_P-littoralis_Contig190.85.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 324056..325384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.85.4

>prot_P-littoralis_Contig190.85.4 ID=prot_P-littoralis_Contig190.85.4|Name=mRNA_P-littoralis_Contig190.85.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=387bp
MNARWHYAVPRVHGCLSLAPCTHNKQHPFRASDRMDATGRGNASTKTRAP
ASDMSLPGDRREAKYEQAMRLLREYKNDVDMELSEAIAHRLNHPGHGAVD
FDQPILSLGQLEEEIEIAMNGSVFEWMKRAGDGIPQFVLPQLFKECRGKV
EARYQVVKSFLFPPGGKVNKTMMREHMCNNHKVLFQLVRGEERGVVVQDI
LDKTSNHLLSHFSFTNDEIKVIRGDISSLEMVVIKYLKIISNVYLQDPPA
TFMNDCGDQQEFDRKRHSKPVGGEGIRTKQLCTVAFPAMIVDKTPRTLGY
TLSARSHQYGEVAKPTPCETMGGIYNLSTLWRWLGKRCQPQIVIVLLRAQ
SCNKPAIRGSYVQAPYNMVFNVVFSIRLVRSTSIIL*
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mRNA from alignment at P-littoralis_Contig190:323900..325410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.85.4 ID=mRNA_P-littoralis_Contig190.85.4|Name=mRNA_P-littoralis_Contig190.85.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1511bp|location=Sequence derived from alignment at P-littoralis_Contig190:323900..325410+ (Pylaiella littoralis U1_48)
TTTTCTCGGAGATGCTGTCATCATAAAGCAGTACTCGTTTCGAGTTTATG
ATACATTCAGAGGACTTCGTTTGTACTTCGTACAGTATCGTATGTCGTCA
AGGAGGGCAGATTGAAAAAAGAAAGACCGCAGGAGACGAGATAGAGATTC
CCGACGATGAATGCCCGCTGGCATTATGCCGTGCCGCGTGTGCATGGTTG
TCTCTCTCTCGCCCCTTGTACACACAACAAACAGCACCCGTTTCGTGCCA
GCGATCGCATGGATGCCACGGGGAGAGGCAACGCTAGTACGAAGACTCGC
GCCCCAGCGAGTGACATGTCACTGCCTGGCGATCGACGAGAGGCCAAATA
TGAACAAGCGATGCGACTACTTCGAGAATATAAAAACGATGTCGACATGG
AGCTCTCAGAGGCGATTGCTCATCGACTTAACCACCCTGGCCATGGTGCC
GTGGACTTCGACCAACCTATCCTCTCTTTGGGACAGCTGGAGGAAGAAAT
CGAAATCGCGATGAACGGGTCGGTGTTCGAGTGGATGAAACGTGCGGGTG
ATGGCATCCCCCAATTTGTGTTGCCACAGCTTTTTAAAGAGTGCCGAGGA
AAAGTCGAAGCACGCTACCAGGTCGTCAAGTCCTTCCTATTTCCCCCCGG
AGGAAAGGTGAACAAGACCATGATGCGCGAGCACATGTGCAACAATCACA
AGGTGCTCTTCCAGCTGGTGCGTGGCGAGGAACGCGGAGTAGTCGTCCAG
GACATCCTCGACAAAACCAGTAACCACCTGCTGTCTCATTTCTCCTTCAC
GAACGACGAAATCAAGGTGATTCGTGGAGACATTTCTTCTCTAGAAATGG
TGGTGATCAAGTATCTGAAGATTATCTCAAATGTTTATCTTCAAGACCCC
CCGGCAACCTTCATGAACGACTGCGGCGACCAACAGGAGTTCGACCGTAA
ACGTCACTCGAAACCTGTGGGCGGCGAGGGCATTCGCACGAAGCAGTTGT
GCACCGTTGCATTCCCGGCCATGATCGTGGACAAGACGCCGCGCACGCTT
GGCTACACGCTCTCTGCAAGGAGCCACCAATACGGCGAGGTACGTATGGT
TAGGATATATGCGCAACATCCCTGCTAGAAGGTGCCCTCTCCGTCTCTTG
CCCTTCGTTGGATTGCAAATAACGCTAAAGCAAAATTTTTGGCAATGGCT
CGACGGACGAGTGGGTGTGTGTGTTGTCATCCCACTCTACACCTTTCGGG
TTCACAGGTGGCCAAACCGACACCTTGCGAGACGATGGGGGGCATCTACA
ACCTGAGTACATTGTGGAGATGGTTGGGAAAGCGATGTCAACCTCAAATA
GTGATTGTCTTGCTTCGTGCACAAAGTTGCAACAAACCGGCGATCAGAGG
GTCATATGTGCAAGCTCCGTACAACATGGTTTTTAATGTTGTTTTTTCGA
TTCGCCTTGTACGAAGTACAAGTATTATTTTATAAAATAATAAAAACTAC
GGATGTTGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:323900..325410+

>mRNA_P-littoralis_Contig190.85.4 ID=mRNA_P-littoralis_Contig190.85.4|Name=mRNA_P-littoralis_Contig190.85.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1161bp|location=Sequence derived from alignment at P-littoralis_Contig190:323900..325410+ (Pylaiella littoralis U1_48)
ATGAATGCCCGCTGGCATTATGCCGTGCCGCGTGTGCATGGTTGTCTCTC
TCTCGCCCCTTGTACACACAACAAACAGCACCCGTTTCGTGCCAGCGATC
GCATGGATGCCACGGGGAGAGGCAACGCTAGTACGAAGACTCGCGCCCCA
GCGAGTGACATGTCACTGCCTGGCGATCGACGAGAGGCCAAATATGAACA
AGCGATGCGACTACTTCGAGAATATAAAAACGATGTCGACATGGAGCTCT
CAGAGGCGATTGCTCATCGACTTAACCACCCTGGCCATGGTGCCGTGGAC
TTCGACCAACCTATCCTCTCTTTGGGACAGCTGGAGGAAGAAATCGAAAT
CGCGATGAACGGGTCGGTGTTCGAGTGGATGAAACGTGCGGGTGATGGCA
TCCCCCAATTTGTGTTGCCACAGCTTTTTAAAGAGTGCCGAGGAAAAGTC
GAAGCACGCTACCAGGTCGTCAAGTCCTTCCTATTTCCCCCCGGAGGAAA
GGTGAACAAGACCATGATGCGCGAGCACATGTGCAACAATCACAAGGTGC
TCTTCCAGCTGGTGCGTGGCGAGGAACGCGGAGTAGTCGTCCAGGACATC
CTCGACAAAACCAGTAACCACCTGCTGTCTCATTTCTCCTTCACGAACGA
CGAAATCAAGGTGATTCGTGGAGACATTTCTTCTCTAGAAATGGTGGTGA
TCAAGTATCTGAAGATTATCTCAAATGTTTATCTTCAAGACCCCCCGGCA
ACCTTCATGAACGACTGCGGCGACCAACAGGAGTTCGACCGTAAACGTCA
CTCGAAACCTGTGGGCGGCGAGGGCATTCGCACGAAGCAGTTGTGCACCG
TTGCATTCCCGGCCATGATCGTGGACAAGACGCCGCGCACGCTTGGCTAC
ACGCTCTCTGCAAGGAGCCACCAATACGGCGAGGTGGCCAAACCGACACC
TTGCGAGACGATGGGGGGCATCTACAACCTGAGTACATTGTGGAGATGGT
TGGGAAAGCGATGTCAACCTCAAATAGTGATTGTCTTGCTTCGTGCACAA
AGTTGCAACAAACCGGCGATCAGAGGGTCATATGTGCAAGCTCCGTACAA
CATGGTTTTTAATGTTGTTTTTTCGATTCGCCTTGTACGAAGTACAAGTA
TTATTTTATAA
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