mRNA_P-littoralis_Contig190.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.14.2
Unique NamemRNA_P-littoralis_Contig190.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A6H5KK91_9PHAE (Abhydrolase_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK91_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 6.560e-108
Identity = 159/242 (65.70%), Postives = 188/242 (77.69%), Query Frame = 2 
Query:  671 PNMLDQIAGDGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQKVLPD 1396
            P   + ++GD LGG+GITLVP+   Y+NVVVWLHGLGDTA GW+S MP+ KL +TKFILPTADTRP+ L GG   P W+DIF +            +SPED  GF ASA+RV AILE+EKA GK  +RMVVGGFSQGGA+ALH CLRATEPLAGCVACSTW+P+NKDYP ALGS AKDIPVAQFHGTRDEVV  TWGQ SH LMKE+LG+  TF+ I  MGHS+   E++S+ +FL++VLPD
Sbjct:   50 PIDFEHVSGDTLGGSGITLVPKDGAYTNVVVWLHGLGDTAAGWASMMPQLKLPNTKFILPTADTRPITLNGGYEMPGWSDIFGLQE----------DSPEDAVGFNASADRVRAILEAEKAKGKESTRMVVGGFSQGGAVALHFCLRATEPLAGCVACSTWIPLNKDYPTALGSAAKDIPVAQFHGTRDEVVQFTWGQHSHILMKEKLGMTTTFEAITGMGHSSSNAEMESVADFLKRVLPD 281
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BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A6V1K3U7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K3U7_HETAK)

HSP 1 Score: 219 bits (559), Expect = 3.370e-63
Identity = 113/234 (48.29%), Postives = 146/234 (62.39%), Query Frame = 2 
Query:  695 GDGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKD-IPVAQFHGTRDEVVLLTWGQRSHRLMKEELG-VKATFDEIPDMGHSACPGELKSIGNFLQKVL 1390
            GD +GG+GITL+P   +Y+NVVVW HGLGDTA GW S MP F L  TKFILPTA TRP+ L  G   P W+DI  +D           E  ED  GF+ S  R+ +I+ SE   G  PS++VVGGFSQGGALAL+  L+ T  +AGCV  S+W+P++  +PAA+   A+  + + Q HG  DEVV   WG+ SH  +K ELG   A ++E P M HSAC  EL+    FL+ + 
Sbjct:   76 GDSIGGDGITLIPEDEEYTNVVVWNHGLGDTAMGWYSAMPAFGLTKTKFILPTAPTRPITLNMGMAMPGWSDIRGLDK----------EDDEDEPGFEESRARIESIVRSEVDKGISPSKIVVGGFSQGGALALYYSLQNTHGIAGCVGFSSWLPLSAKFPAAVSDAARGGLKILQCHGDADEVVRTAWGKLSHEKIKGELGFADAAWEEYPGMAHSACDEELQRCAEFLKGLF 299
[Close]
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A836CN32_9STRA (Lysophospholipase-like protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN32_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.720e-62
Identity = 112/236 (47.46%), Postives = 145/236 (61.44%), Query Frame = 2 
Query:  680 LDQIAGDGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAK-DIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQK 1384
            L +  GDG GGNGI ++P    Y+NVV+W+HGLGDTAD          +    FILPTA TRP++L GG   P W D++ +D            S ED EGF+ SA R+ A+++SEKA G    R+VV GFSQGGA ALHV LR  + L GCVACS W+P+ K+YPAALG GAK  + V Q HG  D VV   WG +S+  +K  +G+ A  +    MGHSA P EL+ +  F+Q+
Sbjct:    3 LTRSRGDGNGGNGIVIMPADQKYANVVIWMHGLGDTAD----------VSVLNFILPTAPTRPISLNGGFMMPGWTDVYGLDET----------SKEDKEGFEQSAARIQALIDSEKAKGIPAQRVVVAGFSQGGATALHVALRTKDALGGCVACSGWLPLAKEYPAALGDGAKAGLKVLQCHGDADVVVRHHWGSQSYNALKA-MGIAAELETYRGMGHSAIPDELERVSAFIQQ 217
[Close]
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A7S2SSS9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSS9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 6.280e-59
Identity = 108/230 (46.96%), Postives = 140/230 (60.87%), Query Frame = 2 
Query:  695 GDGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKM-PSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGV-KATFDEIPDMGHSACPGELKSIGNFL 1378
            GDG+GG G+TL P G  +  VV+W+HGLGDTA GW   +     +  K +LPTA+TRP+ L GG   P W DI  +D +A          PED EG   S+ RV  I+E E   G + P  +++GGFSQGGA+ALH  LRA   L GCVA STW+P+ ++YP ALGS A+D+ V   HGT D VV  +WG+ SH  + E LG+   ++ E   M HSAC  EL+ I  FL
Sbjct:   52 GDGIGGRGVTLTPSGG-HDGVVIWMHGLGDTAMGWYQALWGLAPR-MKIVLPTAETRPITLNGGMSMPGWFDIVGLDSSA----------PEDAEGMAESSARVRRIMEKEMEEGGLGPEAVIIGGFSQGGAVALHTALRADVQLGGCVAASTWLPLREEYPGALGSAAQDLRVLFCHGTEDPVVRPSWGRGSHDFLIENLGIANVSWREYEGMPHSACEDELEDIRKFL 269
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BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A6T6ARW1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6ARW1_9RHOD)

HSP 1 Score: 205 bits (521), Expect = 4.870e-58
Identity = 109/246 (44.31%), Postives = 144/246 (58.54%), Query Frame = 2 
Query:  674 NMLDQIAGDGLGGNGITLVP--RGSDYS--NVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVK-ATFDEIPDMGHSACPGELKSIGNFLQKVLPD 1396
            +M D+  GDG GG G+ +    RG D S  + ++WLHGLGDTA GW+S MP F++   +F+LPTA +R V + G  P PAW+DI  +D  A          PED EGF  S  R+ +I++ E A+G +PSR+ VGGFSQGGA+AL V +R+   L   +  STW+P+   YPA L    +  P+   HG RD VV   WGQ S   +K   GV   T      M HSACP E   IGNFL+K +P+
Sbjct:   37 SMEDRQGGDGHGGAGMVIPSKLRGDDPSRKSSLIWLHGLGDTAQGWASAMPMFQVPYMRFVLPTASSRHVRVAGPFPVPAWSDILDLDENA----------PEDREGFLGSVQRIQSIIDGEIASGVLPSRIAVGGFSQGGAVALSVMMRSRVTLGAFIGASTWLPLRDSYPAELSEANQKTPLIVLHGDRDGVVSPRWGQMSADFVKSSCGVSDVTVKIYRGMDHSACPEEFVDIGNFLRKAIPE 272
[Close]
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A7S0SWW0_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWW0_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.100e-56
Identity = 95/213 (44.60%), Postives = 128/213 (60.09%), Query Frame = 2 
Query:  743 DYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEEL-GVKATFDEIPDMGHSACPGELKSIGNFL 1378
            +Y+ V+ W HGLGDTADGW+  +PE  L+ TK+ILPTA  RP+ L GG   P W+DI+ +D            S ED+ GF  SA RV AI+  E ++G   S + +GGFSQGGALALH  LR+   L GC+A S+W+P NKDYP+ L   +K +P+ Q HG  D VV   WG  +H+ + E +     TF +IP  GH   P E   + +F+
Sbjct:    3 EYNRVLFWFHGLGDTADGWADLVPELNLEKTKYILPTAPIRPITLNGGMSMPGWSDIYGLDET----------SKEDLAGFNESAERVQAIVNQEISSGISASNIFIGGFSQGGALALHYSLRSPLKLGGCIAFSSWLPFNKDYPSVLSDSSKTLPIVQVHGDNDYVVQFKWGSHTHKFLSEIITNPPPTFVKIPKHGHGFHPDETNILKSFI 205
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BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: F0YL04_AURAN (Abhydrolase_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL04_AURAN)

HSP 1 Score: 183 bits (464), Expect = 7.520e-50
Identity = 96/235 (40.85%), Postives = 127/235 (54.04%), Query Frame = 2 
Query:  695 GDGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLK---DTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQKVL 1390
            GDG GG G+TL P   +YS++ +WLHGLGDT   W   M +F ++   DTKF+LP A TR + +  G    AW DIF +D    Q    I ES   I+   A  N +  I+E     G  PSR+ VGGFS GGALALHV LR+   LAGC   S W+P+  DYP  L + A   P+   HG  D  V + +  R+H ++  EL +   F     +GHS C  E+  IG F+   +
Sbjct:   33 GDGCGGTGLTLTPANGNYSSLFIWLHGLGDTPFSWYGTMAQFAIRSMPDTKFVLPLAPTRKITVYHGTSMQAWYDIFGLDDKCAQDRERIAESTFAIQ---ARINNI--IIEQGLQAGVKPSRVAVGGFSLGGALALHVVLRSKYKLAGCAVASGWLPLESDYPEHLSAEACKTPICMSHGLADRRVPVGFAGRTHSILSAELKLAVAFHTYDGLGHSTCASEMVRIGQFVTAAM 262
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BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A4D9D0F4_9STRA (Abhydrolase_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0F4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 3.950e-48
Identity = 91/231 (39.39%), Postives = 126/231 (54.55%), Query Frame = 2 
Query:  698 DGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQKVL 1390
            D +GG GITL P G    + ++W+HGLGD+ +GW+          T+ I PTA TRP+ L GG P P W DI  +D +          SPED  GF+ +  R+  I++ E   G    ++V+GGFSQGGA+ LH+ LR+   L G V  S W+P+  DYPAAL    K +P    HG  D +V   WGQ S   +KE LG+  TF     + H A P E+K    F++++ 
Sbjct:   56 DNVGGAGITLNPVGGPAQSSIIWMHGLGDSGEGWAGAFDPKVFPTTRMIFPTAPTRPITLNGGFPMPGWFDINGLDES----------SPEDRAGFEEAKQRIARIVQGEVEAGVPADKIVLGGFSQGGAVTLHLALRSEVRLGGAVILSGWLPLKADYPAALTEVGKAMPYFHGHGDADGIVRHQWGQHSAEKLKE-LGLNYTFKTYRGLDHGATPEEMKDAVAFMKEIF 275
[Close]
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A3S3PA23_9ACAR (Palmitoyl-protein hydrolase n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PA23_9ACAR)

HSP 1 Score: 173 bits (438), Expect = 1.130e-46
Identity = 89/227 (39.21%), Postives = 128/227 (56.39%), Query Frame = 2 
Query:  713 NGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQKVLP 1393
            N + + P+   +S  +++LHGLGDT  GW+S + + K    K I PTA   PV L GG   P+W D+  +D +           PED  G + +   + ++L+ E  NG   +R+V+GGFSQGG LALH  LR  +PLAG +A S W+P++K+YPAAL    K++P+ Q HG  D +V   WG+ S  ++   L  K  F     M HS+ P EL+   +FL K LP
Sbjct:    6 NNVVINPK-DKHSATIIFLHGLGDTGHGWASTIAQIKPSFAKCICPTAPRMPVTLNGGFEMPSWFDLLTLDASG----------PEDANGIRRATEWIHSLLDEEIKNGIPSNRIVLGGFSQGGGLALHAALRYQQPLAGLLAFSCWLPLHKEYPAALAEANKNVPILQCHGDIDPIVPCQWGRLSAEILSR-LTTKHEFKVYKGMMHSSNPEELRDARDFLAKCLP 220
[Close]
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Match: A0A4Y2BNW1_ARAVE (Palmitoyl-protein hydrolase n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BNW1_ARAVE)

HSP 1 Score: 171 bits (434), Expect = 3.650e-46
Identity = 85/223 (38.12%), Postives = 127/223 (56.95%), Query Frame = 2 
Query:  725 LVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKLKDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDIEGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPLAGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHRLMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQKVLP 1393
            ++   S ++  V++LHGLGDT  GW++ +   KL   K+I PTA T PV L  G   P+W D+  +D           + PED EG K ++  V  ++  E+  G   +R+V+GGFSQGGALA++  LR T+PLAG VA S W+P+ K +P A   G  D+P+ Q HG  D VV   WG+ +H L+K  +           + H++C  E+K +  FLQ+++P
Sbjct:    7 VISAASKHTASVIFLHGLGDTGHGWAAALQMLKLPHVKYICPTAPTMPVTLNAGYRMPSWFDLKTLDA----------DGPEDEEGIKRASETVFQMIAEEEEKGIPSNRIVLGGFSQGGALAIYSALRCTKPLAGVVALSCWLPLYKQFPYA-AEGNSDVPLLQCHGELDTVVPYKWGRMTHELLKTFM-CNVELKTYKGLCHTSCEEEMKDVSEFLQRIIP 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK91_9PHAE6.560e-10865.70Abhydrolase_2 domain-containing protein n=2 Tax=Ec... [more]
A0A6V1K3U7_HETAK3.370e-6348.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CN32_9STRA1.720e-6247.46Lysophospholipase-like protein II n=1 Tax=Tribonem... [more]
A0A7S2SSS9_9STRA6.280e-5946.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6T6ARW1_9RHOD4.870e-5844.31Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0SWW0_9STRA1.100e-5644.60Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
F0YL04_AURAN7.520e-5040.85Abhydrolase_2 domain-containing protein n=1 Tax=Au... [more]
A0A4D9D0F4_9STRA3.950e-4839.39Abhydrolase_2 domain-containing protein n=2 Tax=Mo... [more]
A0A3S3PA23_9ACAR1.130e-4639.21Palmitoyl-protein hydrolase n=1 Tax=Dinothrombium ... [more]
A0A4Y2BNW1_ARAVE3.650e-4638.12Palmitoyl-protein hydrolase n=1 Tax=Araneus ventri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:79978..87445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSL3
PFAMsAbhydrolase_2
Model size1804
Max annot lvl2759|Eukaryota
KEGG rclassRC00037,RC00094
KEGG koko:K06130
KEGG ReactionR02747,R03417
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
Exons8
Evalue1.21e-113
EggNOG OGsCOG0400@1|root,KOG2112@2759|Eukaryota
EC3.1.1.5
Descriptionacyl-protein thioesterase
Cds size768
COG categoryJ
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.14.2prot_P-littoralis_Contig190.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 80338..86769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789915.226747-UTR-P-littoralis_Contig190:79977..803371680789915.226747-UTR-P-littoralis_Contig190:79977..80337Pylaiella littoralis U1_48UTRP-littoralis_Contig190 79978..80337 -
1680789915.3368666-UTR-P-littoralis_Contig190:86769..874451680789915.3368666-UTR-P-littoralis_Contig190:86769..87445Pylaiella littoralis U1_48UTRP-littoralis_Contig190 86770..87445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789915.239732-CDS-P-littoralis_Contig190:80337..804411680789915.239732-CDS-P-littoralis_Contig190:80337..80441Pylaiella littoralis U1_48CDSP-littoralis_Contig190 80338..80441 -
1680789915.252761-CDS-P-littoralis_Contig190:81414..814851680789915.252761-CDS-P-littoralis_Contig190:81414..81485Pylaiella littoralis U1_48CDSP-littoralis_Contig190 81415..81485 -
1680789915.2683516-CDS-P-littoralis_Contig190:82409..825481680789915.2683516-CDS-P-littoralis_Contig190:82409..82548Pylaiella littoralis U1_48CDSP-littoralis_Contig190 82410..82548 -
1680789915.277614-CDS-P-littoralis_Contig190:82852..830031680789915.277614-CDS-P-littoralis_Contig190:82852..83003Pylaiella littoralis U1_48CDSP-littoralis_Contig190 82853..83003 -
1680789915.2877877-CDS-P-littoralis_Contig190:83979..840941680789915.2877877-CDS-P-littoralis_Contig190:83979..84094Pylaiella littoralis U1_48CDSP-littoralis_Contig190 83980..84094 -
1680789915.300465-CDS-P-littoralis_Contig190:84803..848801680789915.300465-CDS-P-littoralis_Contig190:84803..84880Pylaiella littoralis U1_48CDSP-littoralis_Contig190 84804..84880 -
1680789915.3142564-CDS-P-littoralis_Contig190:85512..855631680789915.3142564-CDS-P-littoralis_Contig190:85512..85563Pylaiella littoralis U1_48CDSP-littoralis_Contig190 85513..85563 -
1680789915.3269684-CDS-P-littoralis_Contig190:86709..867691680789915.3269684-CDS-P-littoralis_Contig190:86709..86769Pylaiella littoralis U1_48CDSP-littoralis_Contig190 86710..86769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.14.2

>prot_P-littoralis_Contig190.14.2 ID=prot_P-littoralis_Contig190.14.2|Name=mRNA_P-littoralis_Contig190.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MLDQIAGDGLGGNGITLVPRGSDYSNVVVWLHGLGDTADGWSSRMPEFKL
KDTKFILPTADTRPVALTGGNPTPAWADIFAIDLAAGQTDFHIMESPEDI
EGFKASANRVLAILESEKANGKMPSRMVVGGFSQGGALALHVCLRATEPL
AGCVACSTWVPMNKDYPAALGSGAKDIPVAQFHGTRDEVVLLTWGQRSHR
LMKEELGVKATFDEIPDMGHSACPGELKSIGNFLQKVLPDQEKRSSSEAK
KNVPG*
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mRNA from alignment at P-littoralis_Contig190:79978..87445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.14.2 ID=mRNA_P-littoralis_Contig190.14.2|Name=mRNA_P-littoralis_Contig190.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7468bp|location=Sequence derived from alignment at P-littoralis_Contig190:79978..87445- (Pylaiella littoralis U1_48)
CGAAGGCAAAGAAGGCTCGGAAAGCACGGCCTGTTGCGCTCGCACACAGC
ACCACCGACCGGCGCCGCGGCACTGTCACGGCTCTCAACCAATCAGATTC
GGTCGGGCGAAATTCCGTGAAATATGAGTCTGTTCGGGAGAGCACGGGAA
ATTTCTGAGGAAGGTTCTAATTTCCGAAACGCTTATTTCCGAGTCTTATT
TCCGAAAACCGGAAGACGAGTCTGAATTACTTTATTACCCCACTGGCCTG
AGGGCCCAACGAATTTTACAATAAACTTCTTTCAAATGTTCGGTGATGTA
CAAGTAGTGTCGTGTTCCAGAGGGAGGGGGGGTTATTTTTCTTTTGTGTA
GCCCCCGACGATGCTGTGTTGATGTCTCAGATGCAACCAACTGACCATCT
CACTCGTTATCGTCAGCCTCTTTTTTTAGGGAAAGGAGGGGATTGCTGCT
AAGCGTCTTCCCTGGAGCACCAAGGATTAGGGTGGCAGGCGTCACCTCCA
TCATCAAGTATTTGGCAACAAGTTCAAGCCGCCACAGCACCTCGTTACCA
TCGCATCCTGGATATCCAGCATCTACAGCAGTAGACTAGAGCAACGGGCA
AGACCGTGTATCGGGCGGCAGTAGTCAGCCATCTTCAACTCGGAAGCATC
GGCGTATCATCCATCCCCATCCCAACATGCTGGATCAGATAGCGGGGGAT
GGTCTGGGCGGGAATGGGATCACGCTTGTACCCAGGGTATGCAGTTGTTT
TTACCTTTTTTGTGTTGGTGGGTGCCGTATCCTCCGCTTTGACCCCACGA
CTTCTATGATATAATGCACGTGAAATAATGCTGTGTTGTGGCAGTGTGGT
GTGGGTGCGATCTTTGACTGCGAACCGGTACAGCAATGTGCGGCAAGCTC
AGCCTGTATGTGCGTCCCGTCCCTTCCGTTCAAACTTGAGGAGGGCGAAC
ACACTGTCGTTGCTGTTGTTGTGGTCGTGGGTGCGATATTGGCGAGCAGT
TGTTTTATTACACTCGATGCGCGGCCTTTCCAAATTCAACGGTAACGAAG
GTTCACCGGCACTTCGCCACCGGCCGCCTCTGAAACCAAAACTCCGCAAT
TCGTACAAGTGTCTCACTTCTGTGTGTGTGTGTTCATGCCATTTCCATCT
TCTGGGCTGGGCAGCGGTCTACCGGTACACCTTTCGGTATGAAGTGGGTC
CAGCGCCAGCCTGGTCACACAGAAGGAACGTCGCACAGGAGTTTTTTTAT
GAAAATGCGGCGCAAATTCTACAAAGCTCGGTAGCTTCACCAGTAGCATG
TTGACCATACGTTATGTGAGACTTGCCGTGGGAGGTCGTCTGCTCTCTAA
CCCTCGGATGTCTGTGTAACAGTATTTTTTGGATCAAAATGTTGCTATTT
TGTGTGTACAGATAAGGTGGCTGCTGTGTGCGCATGTACTGCGCCTTGTG
GTCATGCTGGGCAGCAGTAACAGCAGTCTGCCGACAGCTTTCAAGCAAGA
GTACAGCGGTATCGGCCCGCTGACAAGAAGCAAGAAAACAGGCTCAGCCT
GACTCTCTTCTGTGCAAAACCAGACCCGAGCTTGTCTGTGATGTGGAACT
TTGCACAGAAGTACTGAAGCTTACCACTTTCGTGAATGTTTGTAAATCAA
CCTCGCCGTCTTGTTGACCATTTTCTTACCAGCGGGCCGCCCTGCACGTC
GCAAGGGCGGATACACAGCGGTGTGGGGCTTCTGTAGTCGTATTGCTCTC
GATCGTACCCCTCCGCTTGGTGATGCCTTTCGAAGGGCATCATCTACTTC
ATCGGTATCTGTCCTCCGAATTGACACAGCGGAATAAGTTCACCCTCGGC
CGCGGTGTGTATGTTCGTCGTCTGCTTTGCAGGGCAGCGATTACAGCAAC
GTGGTGGTGTGGCTCCATGGCCTGGGAGATACGGTGAGTTGTTACCCCGG
GTAATAGAAAGCATTGCAGTGGGAGCAGGGAGTGGGGCCGTAAACCGGTA
CCCGGTGGTGATGTCGGACCCCGCTTGGCTTAAAATATCGCAAGCTTTTG
TCGTTTTTCCTAGTCACTGATTTGTCAATATCGGATACATACAACTACGC
TGCGCCCTATCCGATGCAATTAATCTATACGGCCAGCATGTTCTCAGATA
CTGCTGTAAACTATACGTGACCAGCATGTGCTCGGATATACAGCAACCGC
CACGTGCGGCACTTCATAGCCCACCCACGCACTCACCCACCCTGGTCAAC
TGGCCAACACAAGGCAATCCGGTACGATTTGTGCTGGAAACTCTCCACCA
GTAGATGTATCGGTGTTTTGTCTCCACCGGGCGCCCTTTCCCTCTCCCCG
GTGGCAGGGGTACACTAGGAGCGGGATTATAGTCTAAAGCCTCCGTGTCA
CACCTTGATTGTCTGCACCGCTTACTCGCTCCTAAAGAAATTATGCAGAG
TTTGATGATTTCTGATGTTTTAGTATGGTCCATATCGTACGGGGTTTAGA
TGCCGGTTGTTCTTTATTGTGTCAACAACAACAACAACAACAACAACCGT
ATGCTCGATCCTTAGGCCGATGGATGGTCCAGTCGAATGCCGGAGTTCAA
GCTCAAGGACACCAAGTTCATTCTTCCCACCGCCGACACCAGGTGTGAAG
ATCATCTCCCCTAACCAATCATATGGAGGGACACCATACCCCGTTGCCCG
ACTGGATTCTACTAACGAAATAAATACGTACGATAGTAGTAGTGCAACAA
TACGATACAGCAGTACCTTTTTTTCCTTCTACTCCTACTGTACGTCGACG
AGGGAAGGGGGACAGCCGAACCCTGCCTTCTTGCGATAAAAGTTGAGGCA
AGCACCGCAGGAGGAAGATAGAGAGAACATAACACTCCTGTGTTTACCTT
CCTGTCCGTCGTGACCCCGGCTGGTGCGCCCACGTACATATCATGCTGTA
CCGAACAGTGTAGAATGGCGCCCGGAACAGATGGGATGGCAACACACAAA
CACAAACACAAACACAAACACACACACACACAGAATATGGGATGACAACA
CACACACACACACACACACACAGGCGCGCGCGCGCTCGGTTCTCAGGGAG
TTACCGCACTAAATATATCAATGTCAAAAAACAAAACTCGCAATCAGGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGACAAACCTTACCTAAAACCCAGCAACAACATGTG
CGTGATGTGACGCAACCGTTGTCGGAACGCAACAGCAGCAGCAGCAGCAG
CAGCAGTAGCAGATTTAACCGCTCATTGTTTCTTTCGCGGTTTTGCGCCA
GGCCGGTTGCCCTTACTGGCGGGAATCCGACGCCTGCTTGGGCTGACATC
TTCGCGATAGACTTGGCTGCTGGTCAAACCGACTTCCATATCATGGAGTC
TCCCGAGGATATCGAGGTGTGTGTGTGGTATTTTGTTGGTGTTTTGGGCT
TGTTTTTACTTGGCATTTTCGATACCGATTTCCACGTGCTGATCGTCATA
GAGGGCCCCCCCCCCCCCCCACTTTCAAGCTAGTGCCTCCTTTTTTAGTG
ACAAATGTACGATATATTCTGGCATATTTAATTTCGTGTTTCTTCGTACA
AATTTCGTCGCCTGGTTTGTGACCACGGGCTAGATTTGGGCGTTAAAATC
ATGTGACGATCAAAAACCACAACAACACAACGTCTATTTCGTCCTTTGGC
GAAAGTGTATCGTACCATTGTTCTTATTCCTTGAGTGAGACTACTGCTGT
CGTTGCGATCTGGGAAAATCTTTCAGAATTTGTCATGAATTCAAATTTAG
AAAATCAGCGGGCTTTAGTTTGCGGAGGAATCGTTATTCTTCTAAAAAGA
CGTCATGCATCGGCAACTGAACTCCTAACCTCCGAAAAAGGCTCTCGTTT
TCTTCTGATTTTGATTCTATTTTTTCACAGTTTTTGCTCTACAGCAGTAG
TATACACGGCATCATCGTGTTCACCTTATTGTTTGGGCCAGGAGCCGTGC
AAATGTTTATCGATGACAGAGAATGACAGGTACAATGTTAATATCCGTCT
GCGATATAGGCATGTGCGCACTATGATGCTACAACGATACCATACCATGC
AACCTGATACAACAACCAGTAGAGTTTGGTCTCACACACCTTCATACAGA
TGGTAAAGCGAAACCAAGTGACACCTACCTGTGCTGTCTTTCTACGAACC
TCGTCGTAAACACTGCTGTAATATCGTTGCATCTCCCTTTAGAACACGTT
CTAAACATCCAGCTCGGGGTGGTTACAAGCGTGCTTCTTTGGGTGGAAAA
TGCCGATGTTGTCGCCCATTGTGCAGTAGAACAGTGGTCCGGCTGAATGC
GGTGACAATTAGCCTCTAATTCTACTCTCGTCCATGTTGCAGGGGTTCAA
GGCCAGCGCCAATCGAGTTCTTGCAATTTTGGAGTCAGAGAAGGCCAACG
GGAAAATGCCGTCAAGAATGGTAGTCGGAGGATTTTCGCAGGGGGGCGCC
TTGGCTCTCCACGTGTGTCTGAGAGCCACTGAGCCCCTAGCAGGTGAGGA
TTTTCCTGAAATTACGCCGCAGCACGAAGGTTCATGCTTCATCTTGATCG
TGTATGATGCTTCGCATATCATCTCTACATGTATGGTGTGACTTTCGCAC
TGTTGTTGATTATTTGGTTGTTTTTTTTGCGGTTGTAGTTGTCATTGTCG
GCGTTGCCCTAGGCGATCACGGGGTGTTCAGAAGTAACACCATCCTACGG
TCAACCTGGAGGAGGTGCATGATAACCATGCCTTTAGTATGCACTATTGC
AGCAGTAGCCGCTGCTCCAACCCCGCGAGGCATGGCTCGCTCAACAGGTT
GCGTTGCTTGCAGCACTTGGGTCCCGATGAACAAGGACTACCCGGCCGCT
CTCGGCAGCGGAGCCAAAGACATCCCAGTGGCACAGTTTCACGGCACAAG
GGACGAGGTTGTGCTGCTCACCTGGGGTCAACGCAGGTGAAGGTTCGTGG
TCACCGCTGACAGTTGCAGGTTTATTTTTTGTTTTCGCCTTGTCCTCTTT
TCTACTTCGGAGTATATTTCCGATATTTCGACTTCTTTGTGTACAGCTTT
TACTGAAAAAATCATCTTTTTCAAAGAGTAATTTTCTACGAAGGGCCTTT
CCCGCCTAGATCTCGCCACATTCGTCATCGCCTGTACTCTAGAGCGTGGA
GTAGGTAGACGGCCGTTTGCTTACTACTGCTGCTGTAGCACGTCTCATGT
GAAGTGCCGTGTTCAGCGGAGGAAGAAATAAAAGCACACGGCGGAACCCT
ATATTTGGTCTGGTATTAAGAACCACGTGTTCTGCGGAGGAGCACTGGAC
CCTCCTGAACCGATTTCCAGACCTTGATCACTCCGCGAAAAGGAATAAGC
CACGGCCGCCTATCTTGTACAGAAACACGTTGTTTCCGGAAGACTCTCGG
CGAGGTATTTCCAGCAGCAGCAACCCCGTCAGTAGTGACGGCCTCCCTGC
TGAGGACAGAGCGAGTACTTGAGTACCAGGTAGAAGTGTAGATGTTCCGA
CAATAACCGACGTGGGTGCGTACTGCGTACGGGTGAGCATGCTGCTGCCC
CAGGGCCGAGAAATCGACAACAACAACAACAACAACAACAACAACAACAA
CAACAATAACAATAACAACAACAACAACAACAACAACAACAACATCATTA
ACAACTTAGAGTGATAAACTTTGTCGTGGACGGCATTCACTTTCTGTGGC
CGCCCGCGGCGTGCTTGCGCTACAGGAGCGCGTTATTATCGTGCTGAACC
GTTTCGTTCATCGCGTGAAGACTACAAGAACAACACCACCAACCTTAGAT
TCCACCAACAAAGTGTGCCTGTTGCTGGTCTGCTCAACATGTGTGTTGCG
CTGCATGCAGTCACAGGCTCATGAAAGAAGAGCTCGGCGTGAAGGCAACG
TTCGACGAAATCCCGGATATGGGACACTCAGGTGCGTCGTTTTGTGTCTA
TCGTTGATGATGTTGTTCTCAACCCCCCCCCAGGGCATCTAGCAAAGGGG
CAAACAACATGAACCGGTTGCGTGCCGCCTGGGTCTGCGACGCAACGCCA
CACCGACATGCGCCTTGGAAATGGCGCCTTTCGCAAAAGCTGATCACAGT
AGTTGAACGCTTAGCCTGGAGTTGTACCTTTTTTCGGCGTCCAAGGACAC
GGTGCGGCACGCCAGACTTCAAGCCACGTACTGCATCAGCTTGGCCTTCC
CTGCTTCTCGTCGCGCCCGAGACTGTGCCTCTTCCCGACTTCTCGCCGCA
AGCTATTCGCTACCATCAGTTAACCTTCGTGAGCTGCATACTCTACTGCC
TCGAGATACGGTGCTAGGGTCTTCCCTCGTCTACATGCTTCAACCTGATC
TGACCTGCCATGTTCTCCGTCAACCACTCTAGTCAGCCCCACACCTGTCG
TCCTTGCGGGAAGCTGCGCTTCCTCAAGAGCAACGACCAAAGACGTGAAC
AGGGCAGTAGACTGACGATCACCGCAAACTGTCTAAGGTTTGCGTCACTC
AGTCACAACGATCGGTGTATCGGTATGCATCGCCCCCCCCCCCCCCCCCC
CCCGCTTCTCACCAAAAACATTTCATGGTGCATGTACAAGTAGTCGCTCC
ACCTATTCAAGCGTGAAAGGAATTATGACCGGTGACTGCTTCCGTTCGCA
TTCGTTTTTGAATGCCGCCCGCCCCCCTCGTCTCGTTCTTGCGAGGGGAC
GAGGAAATGGTAGCGAAATTCGTTCGAGAGGCTGAGGCTATCCCAGGTTA
ATGCTTCTCTGACGCCAAACGCTACACCCTGCCTGCCTGCTTTGCGTGCT
TGTTCCCCGTGTGCGTTGCCGTCGATCACGGCCGGCGATGTTTCCAACGC
CGGCGTCGTGTCATTCTTTCACAACGACCACAACAAAAATGACACAAAAT
ACAGCGTGCCCAGGCGAATTGAAGAGCATCGGAAACTTCCTGCAGAAAGT
CCTACCCGATCAAGAAAAGCGATCGTCGTCGGAGGCAAAGAAAAATGTAC
CAGGTTAATCAATGTTACTTCGAAGTAGAAATTATGTCAGGGCAAATTAT
TGACAAAATCTGGCGGGGTGAATTCAGACCATTTTGCTGCTGGAGAAATA
CGGGCGCAAACGTTAACCCGTTACTTCGGTTGCCCCGCACCCCGCCGCAC
GTAGTGTCGATGTTTTGAGACTATTCCATACGTGGGTGTGCAGGATGTTG
ACGTTTGAATAAGTCAATTGTGACAATTGAAACTGTCGTGCTGTGACAAT
TTCAAAGCATGCGGGCGCACCCGGTATCGTATGTTGGACGCGTTAACCAC
GACAGCAGACGTGGCGAAGGTGGCCCCCACTCGGCGTTGGGGCTAGCGGT
GGGGCGGACTGAGGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:79978..87445-

>mRNA_P-littoralis_Contig190.14.2 ID=mRNA_P-littoralis_Contig190.14.2|Name=mRNA_P-littoralis_Contig190.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig190:79978..87445- (Pylaiella littoralis U1_48)
ATGCTGGATCAGATAGCGGGGGATGGTCTGGGCGGGAATGGGATCACGCT
TGTACCCAGGGGCAGCGATTACAGCAACGTGGTGGTGTGGCTCCATGGCC
TGGGAGATACGGCCGATGGATGGTCCAGTCGAATGCCGGAGTTCAAGCTC
AAGGACACCAAGTTCATTCTTCCCACCGCCGACACCAGGCCGGTTGCCCT
TACTGGCGGGAATCCGACGCCTGCTTGGGCTGACATCTTCGCGATAGACT
TGGCTGCTGGTCAAACCGACTTCCATATCATGGAGTCTCCCGAGGATATC
GAGGGGTTCAAGGCCAGCGCCAATCGAGTTCTTGCAATTTTGGAGTCAGA
GAAGGCCAACGGGAAAATGCCGTCAAGAATGGTAGTCGGAGGATTTTCGC
AGGGGGGCGCCTTGGCTCTCCACGTGTGTCTGAGAGCCACTGAGCCCCTA
GCAGGTTGCGTTGCTTGCAGCACTTGGGTCCCGATGAACAAGGACTACCC
GGCCGCTCTCGGCAGCGGAGCCAAAGACATCCCAGTGGCACAGTTTCACG
GCACAAGGGACGAGGTTGTGCTGCTCACCTGGGGTCAACGCAGTCACAGG
CTCATGAAAGAAGAGCTCGGCGTGAAGGCAACGTTCGACGAAATCCCGGA
TATGGGACACTCAGCGTGCCCAGGCGAATTGAAGAGCATCGGAAACTTCC
TGCAGAAAGTCCTACCCGATCAAGAAAAGCGATCGTCGTCGGAGGCAAAG
AAAAATGTACCAGGTTAA
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