mRNA_P-littoralis_Contig190.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.107.1
Unique NamemRNA_P-littoralis_Contig190.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:353488..353928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789914.7447906-UTR-P-littoralis_Contig190:353487..3536101680789914.7447906-UTR-P-littoralis_Contig190:353487..353610Pylaiella littoralis U1_48UTRP-littoralis_Contig190 353488..353610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789914.7548976-CDS-P-littoralis_Contig190:353610..3539281680789914.7548976-CDS-P-littoralis_Contig190:353610..353928Pylaiella littoralis U1_48CDSP-littoralis_Contig190 353611..353928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.107.1prot_P-littoralis_Contig190.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 353611..353928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.107.1

>prot_P-littoralis_Contig190.107.1 ID=prot_P-littoralis_Contig190.107.1|Name=mRNA_P-littoralis_Contig190.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
HVAPALPGFTNVCVPWLVFSHERGGPCVAKVEVCVCGVFFFIFSALTEVY
NLCVRIIFLLLGSGGLCFAKVYVRDGFLSCPCPGNVLQSLGWGRVCAIAS
AFFYK*
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mRNA from alignment at P-littoralis_Contig190:353488..353928-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.107.1 ID=mRNA_P-littoralis_Contig190.107.1|Name=mRNA_P-littoralis_Contig190.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig190:353488..353928- (Pylaiella littoralis U1_48)
CATGTGGCCCCTGCTCTGCCAGGATTTACAAATGTGTGTGTCCCGTGGCT
TGTTTTTTCACATGAACGAGGAGGTCCCTGCGTTGCAAAGGTTGAAGTTT
GCGTTTGTGGTGTTTTCTTTTTTATTTTCTCTGCTCTGACAGAGGTTTAC
AATTTGTGTGTCCGTATCATTTTTTTATTGCTTGGATCAGGAGGTCTCTG
TTTTGCCAAGGTTTATGTTCGGGACGGTTTTTTGTCATGTCCCTGCCCTG
GCAACGTTTTACAGAGTTTGGGTTGGGGTAGGGTTTGTGCGATTGCGTCG
GCGTTTTTTTACAAGTGATCTCCCTGCTCTGCGAGAAGTTGAAAATAATT
GATAAAAGGCTAATCCACCTGACTACTCAGTCAGCGCTAACAACTCTGGT
TTCATGAATTGGCCCTATCAAGCCAACAAGGGAAATGTAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:353488..353928-

>mRNA_P-littoralis_Contig190.107.1 ID=mRNA_P-littoralis_Contig190.107.1|Name=mRNA_P-littoralis_Contig190.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig190:353488..353928- (Pylaiella littoralis U1_48)
CATGTGGCCCCTGCTCTGCCAGGATTTACAAATGTGTGTGTCCCGTGGCT
TGTTTTTTCACATGAACGAGGAGGTCCCTGCGTTGCAAAGGTTGAAGTTT
GCGTTTGTGGTGTTTTCTTTTTTATTTTCTCTGCTCTGACAGAGGTTTAC
AATTTGTGTGTCCGTATCATTTTTTTATTGCTTGGATCAGGAGGTCTCTG
TTTTGCCAAGGTTTATGTTCGGGACGGTTTTTTGTCATGTCCCTGCCCTG
GCAACGTTTTACAGAGTTTGGGTTGGGGTAGGGTTTGTGCGATTGCGTCG
GCGTTTTTTTACAAGTGA
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