mRNA_P-littoralis_Contig190.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.65.1
Unique NamemRNA_P-littoralis_Contig190.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:298626..299156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789914.6830032-UTR-P-littoralis_Contig190:298625..2986861680789914.6830032-UTR-P-littoralis_Contig190:298625..298686Pylaiella littoralis U1_48UTRP-littoralis_Contig190 298626..298686 -
1680789914.7112045-UTR-P-littoralis_Contig190:299073..2991561680789914.7112045-UTR-P-littoralis_Contig190:299073..299156Pylaiella littoralis U1_48UTRP-littoralis_Contig190 299074..299156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789914.6926138-CDS-P-littoralis_Contig190:298686..2990731680789914.6926138-CDS-P-littoralis_Contig190:298686..299073Pylaiella littoralis U1_48CDSP-littoralis_Contig190 298687..299073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.65.1prot_P-littoralis_Contig190.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 298687..299073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.65.1

>prot_P-littoralis_Contig190.65.1 ID=prot_P-littoralis_Contig190.65.1|Name=mRNA_P-littoralis_Contig190.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MSSQTFPPCLGPRRCCRCPRPHHQHHALVTPLHCRRYIRSPPSPPLSHIA
ALSWYSFPISSLKNSAVHLRYKSCEKKVHARSEIDEALPRSSLLVYLRPW
LRNRLLDGTIPLCILDRTVFSPVVSVRF*
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mRNA from alignment at P-littoralis_Contig190:298626..299156-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.65.1 ID=mRNA_P-littoralis_Contig190.65.1|Name=mRNA_P-littoralis_Contig190.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig190:298626..299156- (Pylaiella littoralis U1_48)
AAAAGAAACAACACAAAAACACACGTATCATCAGATGTTGTCGAGGATGG
TGTCTTCATGCCGTCCTTGCGACGCTAGTGGTGATGTCATCCCAAACATT
TCCTCCTTGTCTGGGTCCACGTCGCTGTTGCCGTTGCCCAAGGCCACATC
ACCAGCACCATGCTCTCGTAACGCCTCTTCACTGCCGGCGTTATATTAGG
TCACCTCCATCACCGCCGCTCTCTCACATAGCAGCTCTTTCTTGGTATTC
CTTCCCCATCAGTTCGCTAAAAAACTCCGCTGTGCACTTGAGGTACAAGT
CTTGTGAAAAAAAAGTTCACGCTCGGAGTGAGATCGACGAAGCTCTTCCC
CGTTCGTCACTGCTTGTCTACCTCCGTCCTTGGCTGCGAAACCGGTTACT
GGACGGCACAATCCCTCTGTGCATCCTGGATCGTACCGTCTTTTCACCTG
TGGTGTCTGTTAGGTTTTAGGGGCTTATCCTACACACCATAGTAGTCAGC
CCTGGCTGACTACTATGGTGTATGGAATTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:298626..299156-

>mRNA_P-littoralis_Contig190.65.1 ID=mRNA_P-littoralis_Contig190.65.1|Name=mRNA_P-littoralis_Contig190.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig190:298626..299156- (Pylaiella littoralis U1_48)
ATGTCATCCCAAACATTTCCTCCTTGTCTGGGTCCACGTCGCTGTTGCCG
TTGCCCAAGGCCACATCACCAGCACCATGCTCTCGTAACGCCTCTTCACT
GCCGGCGTTATATTAGGTCACCTCCATCACCGCCGCTCTCTCACATAGCA
GCTCTTTCTTGGTATTCCTTCCCCATCAGTTCGCTAAAAAACTCCGCTGT
GCACTTGAGGTACAAGTCTTGTGAAAAAAAAGTTCACGCTCGGAGTGAGA
TCGACGAAGCTCTTCCCCGTTCGTCACTGCTTGTCTACCTCCGTCCTTGG
CTGCGAAACCGGTTACTGGACGGCACAATCCCTCTGTGCATCCTGGATCG
TACCGTCTTTTCACCTGTGGTGTCTGTTAGGTTTTAG
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