mRNA_P-littoralis_Contig190.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig190.37.1
Unique NamemRNA_P-littoralis_Contig190.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig190.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig190contigP-littoralis_Contig190:191609..197383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size472
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789914.5141215-CDS-P-littoralis_Contig190:191608..1919251680789914.5141215-CDS-P-littoralis_Contig190:191608..191925Pylaiella littoralis U1_48CDSP-littoralis_Contig190 191609..191925 +
1680789914.5266268-CDS-P-littoralis_Contig190:197230..1973811680789914.5266268-CDS-P-littoralis_Contig190:197230..197381Pylaiella littoralis U1_48CDSP-littoralis_Contig190 197231..197381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig190.37.1prot_P-littoralis_Contig190.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig190 191609..197381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig190.37.1

>prot_P-littoralis_Contig190.37.1 ID=prot_P-littoralis_Contig190.37.1|Name=mRNA_P-littoralis_Contig190.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
KREAGKFFASPERAPDLHRATEGGLCVVRACGTMGNAASNAATGSGSRNK
LNASKTRASRSPKGRRSPKSREVTAEQLCNALRDKGLCIAESDLKKVLAA
HSSIMEAIAFAIDTNIARKMVTGHRRGGGGGGGKISRKSSSGVGGGGGGG
NGGDGG
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mRNA from alignment at P-littoralis_Contig190:191609..197383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig190.37.1 ID=mRNA_P-littoralis_Contig190.37.1|Name=mRNA_P-littoralis_Contig190.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5775bp|location=Sequence derived from alignment at P-littoralis_Contig190:191609..197383+ (Pylaiella littoralis U1_48)
AAAAGGGAGGCGGGCAAGTTTTTCGCGTCGCCAGAGAGAGCTCCTGACCT
GCACCGGGCTACAGAGGGTGGGCTGTGCGTGGTGAGAGCCTGCGGAACCA
TGGGAAATGCAGCTAGCAACGCTGCGACGGGGTCGGGCTCCCGGAATAAG
TTGAATGCTTCAAAAACAAGAGCTAGTCGGAGTCCCAAGGGCAGACGTTC
TCCGAAGAGCAGAGAGGTGACGGCGGAGCAGTTGTGCAACGCTCTGAGGG
ACAAGGGGCTTTGCATCGCCGAGAGCGACCTGAAGAAGGTCTTGGCTGCA
CACAGCAGCATCATGGAGTGAGTCAGAGCTGGTTTTGGCGTCGTCGTCTT
TGTCCTGGCTCTTACTTGTTGCTTGGTCTTGAAGCTACTCGTACGCTTAT
TCCAGCTTGAGGTGCAACAACGTGGCAGGGTGGGATAAAAACGCAAGTAC
CAACTGCACAATTCACAGGGTTCCATGTACGAGTATCATTTCATATCATA
CTAAATTATAGGTGTCATGAAATATTTCGCATCGCCGAGGGCGACCTCAG
GAACGTGGTGGCTGCGCACGCACGGCCATGTCACGAAATGGGACGGAGTC
CATTCAGCGGCTGCCTTGTCTTGGTGGTGGTGTTGTGTCCCGGCTTGTCT
TTGATTTGCTCTTGCGTCCCAAAAGCTGCCAACCTGGTACTGCTGTATTT
GTAAGATATGTCACTCAAGATACCACCCCCTGGACTGATTTTGAAAGCTT
AGTTTCGCAGGGGAGCAGCAGGGGAGACAAGTGTCAGTGTGCCGATAATG
TTGGCGTTATTAAAAGATATGTTGTCAAGAGCTGCTCGAAAACAACATCG
TTTGGTTGGTACTGGCACTATCTTCGCCAAGGGAGCAATCGATCGACCTG
TACTGTAAATCTCGCGCGGTCCAGGGGGGGTGGTATCTCACGTCACCTAC
AGTATCATGCAGTTCGAAGCTTCGATGTACAGCACGAAACGGGCATGTGC
GTGTGTGTGTGTGTAGCACGAAACGGGCATGTGCGTGTGTGTGTGTGTGT
TGTCATCCCATTATTCTGGGCACCAGTCTACACCTTTTGGTATGAAGTGG
GGGCATCAGCCGGGGTCGCACAGAAGGAAGGTCACACACGAGCTTTTTTG
TTTTTTTATTTTGTTTTATTCCCCACTCCTTCCTCCTGTCCTGCGGTACG
TGCCTTTGGTTTTAACGCGAGCTGGGTACAGCAATCCCTTCCCTCTGCTT
ACTCGTGGGTGCATACTTTGTAAAGCAGATAGAGGAGGGCATGATACCCA
AACAAAGTACACAATGACACGATAGCGCATGGTATCCGGTATCCTGTCCT
GCCTTCTATTTTGATCGACAGGAGAGCCACACACAAGCAATCTTTCATAT
CATACGACGCCACAATCACAGCGGGTAATACTTCCAGGTGTAAAAGTGTC
CAGCTTTGTATGATAACATAACCATAAAGCGCCACCACTCATAGCAAGAG
CAGTTCACATTTTATTTGGCACGTAAGCCCGGATTCTAATTTCCTCCGTT
GCAACAGCCGCTCCATATAGGTTCATGTGCGGGGTGCGTAGACAGGCAGC
AGTAGACAGGCAACACAAGAATTTGTGCTCACGTACTTGTATTTCTGAAA
AATCTTCAAGTTTGAGGCTCACGGTCTCATCTGCCAAGTTTTTCGCGTGG
TGGCGCCATCTGTACTTACATATCGGGCATGGTTATACTCCTTCTCTACT
TTTCAGCTATTATCAGCAGTTTTTCAAAAATCAGCCGTTTCAAACATCGA
TTGGCAGGCCACCTCTAGGCGATGGCGTCATCCATCTGTGGTATGACTAT
ACATACACATGGTGAGGATATTTCGCGCATTAGGCCACACTTGAGTGTTG
GCGCCATCGTCTGAAATAGCTTGTACAAGTATGACGAGAACGAGGGTATA
TTTCGCACAATCGCAAGAACGTTGTTGCCTACACGGCGATCACTACGTAT
GATACGAGCGAGAGTATTTCGCACAATCGCAGTAAAGATTCATGTTTCCT
ATACGTACTGTTCGGCAAGCAATACAGGTGCTACTGCTGTATCGTACTGG
TATGCATCCCACATGGAAGAAGTCTCTGGGTTTCTGATACTGTACGCACA
CAAAAACATTATTCCCTCTACGGCGATCGGTGTGAGAGTATGTGCGATCG
TTCCTTCTGTGACTACTACCTGCTGTATCGTATATTGTGTATCCCACGTG
TTAAAAAATGTCTCTGGTGTTCTGATTATCCGGGGCAACTTTCCGCACAG
AGTAGCAAAAACATCCTTTCCTCTACTGTGCGGCAGTCGCGACAGGTACT
ACCTTCTGTGTGTATCCGACATGTGAAAGTCTCTGGTATGCTGATATTCC
GGGGCAACTTTACGCCCCGGGAGTGGTTGGGGAGGCTCGTCGAGAGCGGT
CCAGGGGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTCCCTCTCTCTCCTTCTATTCTCTCTACCTCTCTCCCTCAAGCCTGC
CTTTCTTTCCTCAATCAACCTTCAGCCTGGTAGCGTTCATCCCACCGATT
TGCCGCTTCGAGGTATGTAGTTCCATCATTTCGACCGCACGTCGCCGCTG
CTGTACCGTCGGTACAGACAGTTTTCGTCGATGCACGCATGATGAGGTCT
CAAGTCAGAGAACAGTTTGGGAAACAATATAAGGTCTCCGGTCAAGGCAG
AGCACAGTTTGGGAGACAATATGAGGTCTCCGGTCATGGCAAAGAACAGT
TGGGGAGACATTATGAGGTTTCCGGTCAAGGCAGAGAACAGTTGTGGAGA
TAATATAAGGTATCCGGTCAAGGCAGAGGATAGTAAGGGAGACATTATGA
AGTTTCCGGTCAAGGTAGAGAACCCACCCATATATGATGGGGGTTAGACT
CTTATCCATGAGGCTAGCATTTCTTTCGGCATATTTGGGCGTAAACAGCA
TGTGGAAAATGAGCATTTACGATCCACAAACAAGCATAAAAGACAGAAAT
AGGCATATTTCGAGCATGCATCACCAGAAGAAGGAGTACAGTATGTTCAA
AGCATATGCTATTTATGCTCGCAAAAAAGCAAAAAAAACAAAAAACCATA
AAAAAACAAAACAGTAAGCCTAATGGATAAGAGCCTTACGGGGGTGTCTA
CGTTTCTCTCGTTGAGTGTCCAGCAAAAAAGGGAGATGCTTCGCATTCAT
CGTGGCATACCTGCAGTACGAAGTACTTCTATACTGTACAGTACCTGTAG
CGTATATTATCCTACAGAGTCGTGGATGCGGTTTAAGGAGGGGGGGTGCC
ATGCATGCCAAGAGCACGCCTCTTCACTATGTGGACCGATTTCTGATATC
TCGATTACAAGCACTCCGTCATGAAAAAGTTGTATGTACCCTATACGGAC
CGAGGTTTTGAGGGCGAATGCTAATAAATACTCCGTATGTGGCAAAGAGG
TCGTGCAATACCCTGTATGGACCGATTTTTCGAGCTCCATTACTCGAACG
GAAGCTGTACATCCAGCCCCTATTTGCAGTTTTAAGCTGCAAACAATATT
TGCAGGTCTATGCCGCTCCCGACCAACCTAACCCTAACCCGAACCCTAAC
CCACACGCCCGACCTTTGGGGTGATCTGGTGCGAAAGGGGCCTCTGCGCG
GCTTCGCCACGCGTTCGGTTGGCGTTCTTGACAAAAAGCAGCCGTTGGCC
TTTGGTCAATCAGACAGTGGACCTGCAAACACGGTACTATTTGCAGTGTC
AAACTGCAAATAGGGGCTACCATCCAGCAGGACAGAGTACCCGGTATTGA
CCGACTTTACGAGCTCCCTTGCTCCGCGACGAAGAGGTTGTACAGCATTA
CCCTTTATGGACCACGCACGCATGTACCACAGAAGGAAGGTGGGGGTAAC
TCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCC
TGTAGTTTGAACCGCAGGGTGTAGACTAGTGTGCCAGAGAATATGGGATG
ACAACACACCCTTTATGGACCGATTGACCGATCGCCCTGAAACAGCGCTG
CCGCGAGTGCGGCATGATCGAGATATCGAGCCTTGGCGAGAAAGATAAAA
TAAATGGGAACCCCGGCGTGACGGCGACTTCACCGGTACTCCCCCACCTC
CTTTGGTCGAGCCAGCGTGGTCAACCGACATGGTCGAATGAGGGCGAAAA
AAGACCAGCAACACATGAAAGTCGAGTGACATAAAGGGTGCTGCCCCCAC
CCCCTCCCTCCCCCGCCACCGCCAAACCGTATTTATTTGTGCTTCGTTTA
AAAACAGAATGGGGCCCCCCCCGTGACCCTGAGTTTCATTAACCCACCCT
ACACCTTCTTCCGCCGTGCCAGCGTGGAAAACCGACATGGTCGAATGAAT
GCGGAGAAAGACCAGCAACACAGCTGGGTGGCTCAAAGAGTCCCGTTTGC
GACCCCTGCCACCTTTCCGTTTTTTTTTTTTTTGACACGACAGAAGATAA
GCCTTGGCTTGGCGGTATCTGGTAGATAAGGAGGTCATTGGTCAAGGAAA
GGACTATTGGAGTAAGAGTTCGAACTCGTCTAAAAAATCTCTAGCCCCTC
TGAAAAAAGACCACCGGTCGCCCCGTCTTATGGTTCCCTCGTTAACCTAC
TAGTGGTAAGGTCGTACGTTCGATTCTCTTTGAGAGCATTTCTTGCGGAT
CTACCATACAGTGGAAAGCGAATTACTCGTGCGAAAACAGAGGGAAGGGA
CTGCTGCACCCGACTCGCATTTAAAACCGAAGGCACGCACCGCAGGAAGG
AGGCGTGGGCAATAAAACAAAACAAGAAGTGAAACAGCTCGTGGGTGACC
TTCCTCCTGTGTGACCCCGGCTGTCGCACCCACTTCATACCGAAAGGTGC
AGACTAGTGCCCAGAATAAACGAAAACACACACACAACACACCCGGGTAC
CCGGTTGGGTCCGGGGAGGTGGAACCGGCGGGTACACGGGCGATTGGGCA
GTGGAATACGGTGTCCCTTTCCCCACGGAACAGTTAAACACGGTGCCCCA
AAAATATGAGGGGACGCCGTGTGTGGTGTTCATGGTGGTACCTCATTATC
AAAGGGGGACCTTATTGCGATTCCCATTTCCCGGATAAGAAATATGCTAT
CCGGAACCCGCCGGGTATTTCCGGTACCCGGGTACCCGCGGCAGGTACCC
GGGCAATTTTTAGACGGGGTTGAACTCTACATGGGATACCCACTGCTGTG
CGTTTGCAGCAAGCAACAAGGATGGAAAAACTAAACTCAACGTCCCGCCT
CCATACGGGCTGGATTACGGTGAAAACCCAAAATCTACTCGGAACTGTTT
TCTCACGAGGCGGCTTTTTCGGTTCGAAATCCTGAGAATTTGCATGCCAT
GTTCTAGGTAGGGTCCAACTACGCACGCAACCTTCGAAAGCCGCGTTTTT
ATTCTTTCGCGTGATCGGTGATCGGGTATCATATTGATTGCGTTCGGGAC
AGTCCGCTGACTTTATTTTGGGTTTCCATCGTGAATGAAACCTACCCCCC
CCCCCTCCCCTGAAAAAAACAGGGCGATCGCTTTCGCCATCGACACCAAC
ATTGCGAGGAAGATGGTCACAGGCCACCGCCGTGGTGGTGGTGGTGGTGG
TGGCAAGATCTCCCGCAAAAGCAGCAGCGGGGTTGGCGGCGGTGGTGGAG
GTGGCAACGGTGGCGATGGTGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig190:191609..197383+

>mRNA_P-littoralis_Contig190.37.1 ID=mRNA_P-littoralis_Contig190.37.1|Name=mRNA_P-littoralis_Contig190.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig190:191609..197383+ (Pylaiella littoralis U1_48)
AAAAGGGAGGCGGGCAAGTTTTTCGCGTCGCCAGAGAGAGCTCCTGACCT
GCACCGGGCTACAGAGGGTGGGCTGTGCGTGGTGAGAGCCTGCGGAACCA
TGGGAAATGCAGCTAGCAACGCTGCGACGGGGTCGGGCTCCCGGAATAAG
TTGAATGCTTCAAAAACAAGAGCTAGTCGGAGTCCCAAGGGCAGACGTTC
TCCGAAGAGCAGAGAGGTGACGGCGGAGCAGTTGTGCAACGCTCTGAGGG
ACAAGGGGCTTTGCATCGCCGAGAGCGACCTGAAGAAGGTCTTGGCTGCA
CACAGCAGCATCATGGAGGCGATCGCTTTCGCCATCGACACCAACATTGC
GAGGAAGATGGTCACAGGCCACCGCCGTGGTGGTGGTGGTGGTGGTGGCA
AGATCTCCCGCAAAAGCAGCAGCGGGGTTGGCGGCGGTGGTGGAGGTGGC
AACGGTGGCGATGGTGGT
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