mRNA_P-littoralis_Contig19.184.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.184.1
Unique NamemRNA_P-littoralis_Contig19.184.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: D7FRF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.170e-33
Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAVKFVAPPAAKSYAPGTFKFQEQFGDDE 207
            MVF GQDAWRKHPMLT CYKRPFPG GIALG+F GYC+LDG +KF   P    YAPGTFKF+ Q  DDE
Sbjct:    1 MVFGGQDAWRKHPMLTGCYKRPFPGLGIALGLFAGYCVLDGTIKFATAPTKDLYAPGTFKFEAQGEDDE 69
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A1V9Y7Y0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7Y0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.450e-12
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILD 120
            MV A QDAWRKHP L+NC K+PFPG GIA GIF+ Y ++D
Sbjct:    1 MVLAHQDAWRKHPFLSNCSKKPFPGLGIAAGIFSVYLVVD 40
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: W4GNJ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNJ0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.750e-12
Identity = 27/40 (67.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILD 120
            MV AGQDAWR HP LT C K+P PGFGIA GIF  Y  +D
Sbjct:   25 MVLAGQDAWRSHPFLTGCIKKPIPGFGIAAGIFAVYLTVD 64
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A024TWK1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TWK1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.670e-11
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILD 120
            MV AGQDAWR HP LT C K+P PGFG+A GIF  Y  +D
Sbjct:    1 MVLAGQDAWRSHPFLTGCIKKPVPGFGMAAGIFAVYLTVD 40
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A024G595_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G595_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.290e-11
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAVK 132
            MV A QDAWRKHP ++NC K+P PGFGIA  IF  Y ++D   K
Sbjct:    1 MVLAHQDAWRKHPFISNCKKKPLPGFGIASAIFGVYLVIDFITK 44
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A067C913_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C913_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 8.860e-11
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAV 129
            MV A QDAWRKHP L+NC K+P PG GIA+GIF+ Y  + GAV
Sbjct:    1 MVLAHQDAWRKHPFLSNCTKKPLPGLGIAVGIFSVYLAI-GAV 42
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A1V9ZKV8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKV8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.690e-10
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAV 129
            MV A QDAWRKHP LTNC K+P PG GIA GIF G  +  GA+
Sbjct:    1 MVLAHQDAWRKHPFLTNCTKKPLPGLGIAAGIF-GVYLAVGAI 42
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: K3WAK3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAK3_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 3.230e-10
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILD 120
            MV A QDAWRKHP ++ C K+PFPG GIA  IF  Y ++D
Sbjct:    1 MVLAHQDAWRKHPFISGCAKKPFPGLGIASAIFGAYLVVD 40
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A836CDR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-9
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   13 GQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAVKFVAPPAAKSYAPGTF 177
            GQDAWRKHP++ NC+K  FPGFG A+ I   Y   D  +KF+     + +AP TF
Sbjct:    7 GQDAWRKHPVIANCHKGAFPGFGTAVLIVGAYIAYDQTIKFMNREP-QVFAPVTF 60
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BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Match: A0A662XPS6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPS6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.360e-9
Identity = 29/66 (43.94%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:    1 MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAVKFVAP----PAAKSYAPGTFKFQ 186
            MV A QDAWRKHP +T C K+PF G G+A  IF  Y ++D      +P    P       G FKF+
Sbjct:    1 MVLAHQDAWRKHPFITGCGKKPFTGLGMASAIFGVYLVVDLITSRSSPHDPHPQMDYIPRGKFKFE 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FRF4_ECTSI5.170e-3372.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9Y7Y0_9STRA1.450e-1267.50Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W4GNJ0_9STRA7.750e-1267.50Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024TWK1_9STRA1.670e-1165.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024G595_9STRA3.290e-1159.09Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A067C913_SAPPC8.860e-1165.12Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZKV8_9STRA1.690e-1065.12Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3WAK3_GLOUD3.230e-1060.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A836CDR6_9STRA1.800e-949.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662XPS6_9STRA2.360e-943.94Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:827989..830227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRF4
PFAMsNDUF_B12
Model size293
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.57e-34
EggNOG OGs2E7JH@1|root,2SE52@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_000750.1
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789913.7518039-UTR-P-littoralis_Contig19:827988..8280591680789913.7518039-UTR-P-littoralis_Contig19:827988..828059Pylaiella littoralis U1_48UTRP-littoralis_Contig19 827989..828059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789913.7643185-CDS-P-littoralis_Contig19:828059..8281391680789913.7643185-CDS-P-littoralis_Contig19:828059..828139Pylaiella littoralis U1_48CDSP-littoralis_Contig19 828060..828139 -
1680789913.773964-CDS-P-littoralis_Contig19:830085..8302271680789913.773964-CDS-P-littoralis_Contig19:830085..830227Pylaiella littoralis U1_48CDSP-littoralis_Contig19 830086..830227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.184.1prot_P-littoralis_Contig19.184.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 828060..830227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.184.1

>prot_P-littoralis_Contig19.184.1 ID=prot_P-littoralis_Contig19.184.1|Name=mRNA_P-littoralis_Contig19.184.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MVFAGQDAWRKHPMLTNCYKRPFPGFGIALGIFTGYCILDGAVKFVAPPA
AKSYAPGTFKFQEQFGDDEDDDE*
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mRNA from alignment at P-littoralis_Contig19:827989..830227-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.184.1 ID=mRNA_P-littoralis_Contig19.184.1|Name=mRNA_P-littoralis_Contig19.184.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2239bp|location=Sequence derived from alignment at P-littoralis_Contig19:827989..830227- (Pylaiella littoralis U1_48)
ATGGTGTTTGCTGGGCAGGACGCGTGGCGAAAGCACCCGATGCTGACAAA
TTGTTACAAGCGACCGTTCCCTGGTTTTGGCATTGCGTTGGGCATCTTTA
CGGGCTACTGCATTCTCGACGGGGCTGTCAAGTTTGTTGCACGTGAGTCC
GGTCTTCTCAACAATGAATACAAAGACTAGGTCCTCTTGGAAGGCACAGC
AGGAAGCAGGAGCGGTATTCATCAGTAGGGGCATGTGAAAGTAGAGAAGG
CGGGGTGTCAACGTGTCAACCGTGTACCCCGACAATTAGCTTTCTCCGTG
CGACATTAGTTATGATTGTACATAGCAGACTTGGTCTCGTGTGTTTTGTG
TGTTTCAGCCTGCAGCAACTCCCGTATTTACGCCGCGTTTCCGAGGGCCC
GGCCTCTCTGGAGAGCACCTCTCCAGGCAGATAGAGAGATAGAGCACACA
ACACACCACGTACTGCCAGCATGCAACTGCTGTATTGGGGGCTCCTAAAG
GCTTTACCACTTACTGGTACAGTACTCCAAAACAATGATGTAGGTGGTAG
GTGGGTGTCTCTATGTACAAGTATTATGTTTTGGATTGCACTGTAGTACC
TGTAGTGTAGCGCAGTATTTTGGCCGTCACGTCCGTGATGGTGTACACAC
CGCATGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCACCCTG
CGGTTCAAACTACAGGCCAGGCCCATCGACGGGGTCACACAGGAGGAAGG
TCAACACAGGACAAGTTACCCACACCTTCCTTCTGCGGTACATGCGTGAG
ATTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGC
CGAATCTGCTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAAC
ACACTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTAACGA
GGGGACCACTAGTTCACCGGGGCGACCGGTGCGTGTACCTGTATGGTAAT
GCGGAGTGTTGATCGTCTCTGCAGGCGGACCAAAGCTTTGTATGTGTGTC
TGTGTGTGTCTGTGTGTGTCTATGTGTATCTGTGTGTTGGAGTCGTTGTA
GGCACTGACTGTCGGCGAATTCAATTACTTCAGTCGACAAGACCACTCCA
ATCGCATTCACACAGCAGTTGTTCAAGACAACCTAAAGCTCCTTGCTGAC
CTCTTCAAAAGAACAGCGATACAGCAGTATCCATTGTAAAGCTCGACACC
CTCATCTGTCATTGCATCTGGTGTTCCCAACACCCTTTTCCGCTGACTGA
CGCCGTGCTGTGGCACGATGTATTGCGAGGCCGGGGCCTGTAGCTAAAAT
ACCCGCCGGTCCCGTAGTTTGATACCTATGATACCGTGATTGTTTCTGTC
TCGTGAGGCGGCCGTGGTAGTCGGCAAGAGCACAGATTGAAGAAATGGAG
GCTCACACTGTCCCCAATATCAAGAAAATCCTTCTGAGAAACACAGCCTA
ACGGTGGTAACGGTGGACTCCACTTCTTCCAGGGGTACAATGGATGTAAC
TCAGCGTTGGCAACAAACCATGAAATATATGGCACTTCGTGGCTTCGACC
ACATCGTGACGTTTCATCTCTGTAAGCGCCAACTGCTGTAAGTGGCCGGG
ATGGTGTAGGGCAGGCAAGCCGTCAGGACGTAAAAGGCCAGACTGGACGG
GAAGAGGTGCGCATTATTTTTAGTGGGATGGAAGCAATACCGCGAATATT
TAATACAAATAGAATATAAGGCTTCGTGTGCGTGCGGCGCTTACATCCGT
GAACAACTTCGTTCCAGGTATTTGTCATACAGTATGCGGTAGCACCTGGT
CAGGCCCGATCACACACCGCCACACCAGATGTTGGCTCTGCCTCGTGCTA
CATTCTATCCATGTCTATGAATATCGTTCTTGCTACTGCTGTAGAGGTGG
AAACATGAACAGAGCCATCATATGAGTTCATGCTGCCTTGCCCCCGATAC
TTTTCCCCACGCAAACGACACACTTTTGAGTCGGGATCATATCTCCCCCC
TACCCCCACCCCCCTCTTCAACCCCGTTTTTTCCGCAGCTCCCGCGGCGA
AATCGTACGCCCCCGGCACGTTCAAGTTCCAGGAGCAATTCGGCGACGAC
GAAGACGACGACGAGTAGAGTGGTTGGGGTCGGTAGTGTATAGCACGATA
ATATAGGCAACATCGAACGGCGCTCACAGCTCTCAGTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:827989..830227-

>mRNA_P-littoralis_Contig19.184.1 ID=mRNA_P-littoralis_Contig19.184.1|Name=mRNA_P-littoralis_Contig19.184.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig19:827989..830227- (Pylaiella littoralis U1_48)
ATGGTGTTTGCTGGGCAGGACGCGTGGCGAAAGCACCCGATGCTGACAAA
TTGTTACAAGCGACCGTTCCCTGGTTTTGGCATTGCGTTGGGCATCTTTA
CGGGCTACTGCATTCTCGACGGGGCTGTCAAGTTTGTTGCACCTCCCGCG
GCGAAATCGTACGCCCCCGGCACGTTCAAGTTCCAGGAGCAATTCGGCGA
CGACGAAGACGACGACGAGTAG
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