mRNA_P-littoralis_Contig19.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.139.1
Unique NamemRNA_P-littoralis_Contig19.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: A0A6H5KKK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.320e-35
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
             D+RI  LPGG+LFPD+LA KLIQT+D NG+GLLQQSEFAPTEELR RLENLFSQQREE+RL R+E+RQRQMDD MRPDA A VV+
Sbjct:   10 ADERIAGLPGGTLFPDELALKLIQTYDHNGNGLLQQSEFAPTEELRTRLENLFSQQREEKRLARMEERQRQMDDNMRPDAGAVVVS 95          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 6.520e-35
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
            VD+RI  LPGG+LFPD+LA KLIQT+DQNGDGLLQQSEFAPTEELR RLENL SQQRE+ERL R+E+RQRQMDDKMRPD  A VV+
Sbjct:  156 VDERIAGLPGGTLFPDELALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLLSQQREDERLARLEERQRQMDDKMRPDTGAVVVS 241          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: A0A6H5KCI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.020e-34
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 1
Query:    4 DDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
            D+RI  LPGG+LFPD+LA KLIQT+D NG+GLLQQSEFAPTEELR RLENLFSQQREE+RL R+E+RQRQMDD MRPDA A VV+
Sbjct:   21 DERIAGLPGGTLFPDELALKLIQTYDHNGNGLLQQSEFAPTEELRTRLENLFSQQREEKRLARMEERQRQMDDNMRPDAGAVVVS 105          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: A0A6H5JBJ0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.350e-33
Identity = 66/86 (76.74%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
            VD+RI  LPGG+LFPD+LA KLIQT+DQNGDGLLQ SEFAPTEELR RLE+LFSQQRE+ER+ R+E+RQR+MDDKMRPD  A V A
Sbjct:   92 VDERIAGLPGGTLFPDELALKLIQTYDQNGDGLLQLSEFAPTEELRTRLEDLFSQQREDERVARMEERQRRMDDKMRPDTGAVVTA 177          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 8.120e-31
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
            VDDRI  LPGG+LFPDDLA KLIQT+DQNGDGLLQQSEFAPTEELR RLENLFSQQREEER+ R+E       D+MRPDA   VV+
Sbjct:  156 VDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDRMRPDAGTVVVS 241          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 9.730e-31
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
            VDDRI  LPGG+LFPDDLA KLIQT+DQNGDGLLQQSEFAPTEELR RLENLFSQQREEER+ R+E       D+MRPDA   VV+
Sbjct:  156 VDDRIAGLPGGTLFPDDLALKLIQTYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXDRMRPDAGTVVVS 241          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 111 bits (278), Expect = 2.840e-27
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKM 228
            +D RI ALPGGSLFPDDLARKLI T+DQNGDGLLQ+SEFAPTEELR RLEN+F  Q+E  R  RVE+RQRQM+DK+
Sbjct:  154 IDARIAALPGGSLFPDDLARKLIDTYDQNGDGLLQRSEFAPTEELRTRLENMFRDQQETARQARVEERQRQMEDKL 229          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.410e-19
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDK 225
            V+ +I  LPG +LFPDDLA +LI+ +DQNGDG+LQQSEFAPTEELRARLE++F ++REEE   R  +R+R+MD K
Sbjct:  151 VEAKILELPGRALFPDDLAERLIKLYDQNGDGVLQQSEFAPTEELRARLESIFRERREEELEARQAERKREMDAK 225          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.970e-17
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:   64 LIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVA 258
            L++++DQNGDGLLQQSEFAPTEELR RLENLFSQQREEER+ R+E        KMRPDA A  V+
Sbjct:   40 LVRSYDQNGDGLLQQSEFAPTEELRTRLENLFSQQREEERVARMEXXXXXXXXKMRPDAGAVEVS 104          
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.650e-14
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLENLFSQQREEERLVRVEKRQRQMD----DKMRPDAEAAVVASP 264
            VD+RI  +PGGSL P +LA+KLI+++D NGDG+LQ SEFA   ++R RL++LF+ + +E RL     R+R+++    DK R +A+A  +A P
Sbjct:  166 VDERISEMPGGSLLPMELAQKLIESYDTNGDGVLQPSEFASKADMRVRLDSLFADRAQEARLEAAAAREREIENRGADKARQEAKARGLALP 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KKK9_9PHAE1.320e-3577.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG5_ECTSI6.520e-3580.23EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5KCI4_9PHAE1.020e-3478.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBJ0_9PHAE1.350e-3376.74EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LS20_ECTSI8.120e-3175.58EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LS19_ECTSI9.730e-3175.58EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
A0A2I6U1M4_SACJA2.840e-2776.32Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
A0A6H5JY95_9PHAE2.410e-1964.00EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5KUU9_9PHAE6.970e-1769.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LTM8_ECTSI2.650e-1446.74TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:648533..648797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRG4
PFAMsEF-hand_5,TIC20
Model size265
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue3.57e-36
EggNOG OGs2BYWW@1|root,2QUSD@2759|Eukaryota
Descriptionprotein transport
Cds size264
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789911.785443-CDS-P-littoralis_Contig19:648532..6487961680789911.785443-CDS-P-littoralis_Contig19:648532..648796Pylaiella littoralis U1_48CDSP-littoralis_Contig19 648533..648796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.139.1prot_P-littoralis_Contig19.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 648533..648796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.139.1

>prot_P-littoralis_Contig19.139.1 ID=prot_P-littoralis_Contig19.139.1|Name=mRNA_P-littoralis_Contig19.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
VDDRIDALPGGSLFPDDLARKLIQTHDQNGDGLLQQSEFAPTEELRARLE
NLFSQQREEERLVRVEKRQRQMDDKMRPDAEAAVVASP
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mRNA from alignment at P-littoralis_Contig19:648533..648797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.139.1 ID=mRNA_P-littoralis_Contig19.139.1|Name=mRNA_P-littoralis_Contig19.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=265bp|location=Sequence derived from alignment at P-littoralis_Contig19:648533..648797+ (Pylaiella littoralis U1_48)
GTGGACGACCGTATCGACGCACTTCCGGGAGGCTCGCTATTCCCCGACGA CCTCGCCCGCAAGCTCATCCAGACCCACGACCAAAACGGCGACGGCCTGC TGCAGCAGTCGGAGTTCGCCCCCACGGAGGAGCTCAGGGCGAGGCTCGAG AACCTGTTCAGCCAGCAGCGGGAGGAGGAGCGCCTGGTGCGTGTTGAGAA GCGACAGCGGCAGATGGACGACAAGATGAGGCCGGACGCGGAGGCGGCGG TGGTGGCGTCGCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:648533..648797+

>mRNA_P-littoralis_Contig19.139.1 ID=mRNA_P-littoralis_Contig19.139.1|Name=mRNA_P-littoralis_Contig19.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig19:648533..648797+ (Pylaiella littoralis U1_48)
GTGGACGACCGTATCGACGCACTTCCGGGAGGCTCGCTATTCCCCGACGA
CCTCGCCCGCAAGCTCATCCAGACCCACGACCAAAACGGCGACGGCCTGC
TGCAGCAGTCGGAGTTCGCCCCCACGGAGGAGCTCAGGGCGAGGCTCGAG
AACCTGTTCAGCCAGCAGCGGGAGGAGGAGCGCCTGGTGCGTGTTGAGAA
GCGACAGCGGCAGATGGACGACAAGATGAGGCCGGACGCGGAGGCGGCGG
TGGTGGCGTCGCCG
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