mRNA_P-littoralis_Contig19.138.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.138.1
Unique NamemRNA_P-littoralis_Contig19.138.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.138.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.680e-8
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   73 MAPITASIAPLAALFMGSTTTAFVAPTGRGVSWSLAGPQEPSGRPLPPSPGATTSLVAGRQHER 264
            MAPITA+I PL  LF+GSTT AFV PTGRG SWSLA PQ         +  ++TS VA R + R
Sbjct:    1 MAPITATIVPLVTLFVGSTT-AFVTPTGRGASWSLANPQH--------AVRSSTSAVATRHNAR 55
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BLAST of mRNA_P-littoralis_Contig19.138.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.690e-8
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   73 MAPITASIAPLAALFMGSTTTAFVAPTGRGVSWSLAGPQEPSGRPLPPSPGATTSLVAGRQHER 264
            MAPITA+I PL  LF+GSTT AFV PTGRG SWSLA PQ         +  ++TS VA R + R
Sbjct:    1 MAPITATIVPLVTLFVGSTT-AFVTPTGRGASWSLANPQH--------AVRSSTSAVATRHNAR 55
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BLAST of mRNA_P-littoralis_Contig19.138.1 vs. uniprot
Match: A0A6H5L2G5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.250e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   73 MAPITASIAPLAALFMGSTTTAFVAPTGRGVSWSLAGPQ 189
            MAPI+A+I PL  LF+GSTT AFV PTGRG SWSLA PQ
Sbjct:    1 MAPISATIVPLVTLFVGSTT-AFVTPTGRGASWSLANPQ 38
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BLAST of mRNA_P-littoralis_Contig19.138.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 3.030e-5
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   73 MAPITASIAPLAALFMGSTTTAFVAPTGRGVSWSLAGPQ 189
            MAP++A+  PL AL +GSTT AFVAP GRG SWSLA PQ
Sbjct:    1 MAPLSATTIPLLALSLGSTT-AFVAPIGRGASWSLANPQ 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LS20_ECTSI1.680e-856.25EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LS19_ECTSI1.690e-856.25EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
A0A6H5L2G5_9PHAE7.250e-874.36EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FRG5_ECTSI3.030e-569.23EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:647126..647407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LS19
PFAMsEF-hand_5,TIC20
Model size282
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue2.78e-09
EggNOG OGs2BYWW@1|root,2QUSD@2759|Eukaryota
Descriptionprotein transport
Cds size282
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789911.7510743-CDS-P-littoralis_Contig19:647125..6474071680789911.7510743-CDS-P-littoralis_Contig19:647125..647407Pylaiella littoralis U1_48CDSP-littoralis_Contig19 647126..647407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.138.1prot_P-littoralis_Contig19.138.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 647126..647407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.138.1

>prot_P-littoralis_Contig19.138.1 ID=prot_P-littoralis_Contig19.138.1|Name=mRNA_P-littoralis_Contig19.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
QHHNTEQHTFLPHFLPQHHTTTYNMAPITASIAPLAALFMGSTTTAFVAP
TGRGVSWSLAGPQEPSGRPLPPSPGATTSLVAGRQHERLLCEW*
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mRNA from alignment at P-littoralis_Contig19:647126..647407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.138.1 ID=mRNA_P-littoralis_Contig19.138.1|Name=mRNA_P-littoralis_Contig19.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig19:647126..647407+ (Pylaiella littoralis U1_48)
CAACACCACAACACGGAGCAGCACACCTTCCTCCCGCACTTCTTACCGCA
ACATCATACAACGACATACAACATGGCACCCATCACCGCAAGTATCGCCC
CACTGGCGGCCCTCTTCATGGGCTCCACCACCACTGCTTTCGTCGCTCCC
ACCGGCCGCGGCGTATCGTGGTCCCTCGCCGGCCCTCAGGAGCCGTCAGG
TCGTCCACTTCCACCGTCGCCAGGCGCAACAACATCGCTCGTCGCCGGTC
GGCAACACGAACGGCTTCTCTGCGAATGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:647126..647407+

>mRNA_P-littoralis_Contig19.138.1 ID=mRNA_P-littoralis_Contig19.138.1|Name=mRNA_P-littoralis_Contig19.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig19:647126..647407+ (Pylaiella littoralis U1_48)
CAACACCACAACACGGAGCAGCACACCTTCCTCCCGCACTTCTTACCGCA
ACATCATACAACGACATACAACATGGCACCCATCACCGCAAGTATCGCCC
CACTGGCGGCCCTCTTCATGGGCTCCACCACCACTGCTTTCGTCGCTCCC
ACCGGCCGCGGCGTATCGTGGTCCCTCGCCGGCCCTCAGGAGCCGTCAGG
TCGTCCACTTCCACCGTCGCCAGGCGCAACAACATCGCTCGTCGCCGGTC
GGCAACACGAACGGCTTCTCTGCGAATGGTGA
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