mRNA_P-littoralis_Contig19.117.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.117.1
Unique NamemRNA_P-littoralis_Contig19.117.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.490e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    4 DVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            DVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ
Sbjct:  122 DVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 175
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.240e-22
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            TDV+RV+LATRAFPGSHTA+DIKPWIEALTLEYF DL+G SV+  DVFL FTVDQ
Sbjct:  124 TDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQ 178
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 6.000e-21
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            TDV+RV+LATRAFPGSHTA+DIKPWIEALTLEY  DL+G SV+  DVFL FTVDQ
Sbjct:  124 TDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQ 178
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.200e-21
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            TD+TR+ALA RAFPGSHTAEDI+PWIE LTLEYF   +G SVQP DVFL FTVDQ
Sbjct:  120 TDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQ 174
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.240e-21
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            TD+TR+ALA RAFPGSHTAEDI+PWIE LTLEYF   +G SVQP DVFL FTVDQ
Sbjct:  315 TDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQ 369
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-19
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            TDVTRVALA RAFPG+HTA+DI PWIE LT EYF D +G  V+P DVFL FTVDQ
Sbjct:  313 TDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQ 367
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.770e-16
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEA--------LTLEYFKDLIGPSVQPHDVFLGFTVDQ 165
            T +TRV LATRAFPGSHTA DI+PWIE         LT E+F D++G +VQP DVFL FTVDQ
Sbjct:  295 TTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQ 357
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-8
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTV 159
            TDVTRVALA RAFPG+HTA+DI+PWIE L    F   +  +VQ  D+F G T+
Sbjct:  429 TDVTRVALACRAFPGTHTADDIRPWIEELRC-LFLHCVQCAVQDDDIF-GATI 479
[Close]
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.640e-7
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 TDVTRVALATRAFPGSHTAEDIKPWIE 81
            TD+TR+ALA RAFPGSHTAEDI+PWIE
Sbjct: 1399 TDMTRIALAARAFPGSHTAEDIQPWIE 1425
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JXV5_9PHAE1.490e-28100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE9.240e-2281.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE6.000e-2180.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE8.200e-2178.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE8.240e-2178.18Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JRT6_9PHAE2.530e-1974.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.770e-1663.49Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFJ9_9PHAE1.780e-858.49Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KVP4_9PHAE7.640e-785.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:507806..508217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size167
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.9460204-CDS-P-littoralis_Contig19:507807..5078881680789910.9460204-CDS-P-littoralis_Contig19:507807..507888Pylaiella littoralis U1_48CDSP-littoralis_Contig19 507808..507888 -
1680789910.9591959-CDS-P-littoralis_Contig19:508133..5082171680789910.9591959-CDS-P-littoralis_Contig19:508133..508217Pylaiella littoralis U1_48CDSP-littoralis_Contig19 508134..508217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.117.1prot_P-littoralis_Contig19.117.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 507808..508217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.117.1

>prot_P-littoralis_Contig19.117.1 ID=prot_P-littoralis_Contig19.117.1|Name=mRNA_P-littoralis_Contig19.117.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
TDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLG
FTVDQ
back to top

mRNA from alignment at P-littoralis_Contig19:507806..508217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.117.1 ID=mRNA_P-littoralis_Contig19.117.1|Name=mRNA_P-littoralis_Contig19.117.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=412bp|location=Sequence derived from alignment at P-littoralis_Contig19:507806..508217- (Pylaiella littoralis U1_48)
ACGGATGTTACCCGTGTCGCGCTTGCGACGAGAGCGTTTCCCGGCAGCCA
CACCGCCGAGGACATCAAACCCTGGATCGAAGCGGTGAGAAATACAATTT
AAAATTAGAATGATTTTTTTGAACTTTTGTTTCTGTATCGGACTATCCTT
TTCCAGCTGTCGGTGGACAACAACGAATGGAATATCAAACGAATACTATA
ATATTTTGATATTATGATAGTTTATATTTTGATGAAAACAGAGAAAACGT
AACACTAATATAAACATTTAATCTTGGGCTCTGTTACCTTCCTTCCGTTG
TCGAACGACTGAATTAATAAAATTAACAGCTCACGCTGGAGTACTTCAAG
GACTTGATCGGGCCGTCGGTCCAGCCCCACGACGTCTTCCTCGGGTTCAC
GGTGGATCAAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig19:507806..508217-

>mRNA_P-littoralis_Contig19.117.1 ID=mRNA_P-littoralis_Contig19.117.1|Name=mRNA_P-littoralis_Contig19.117.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig19:507806..508217- (Pylaiella littoralis U1_48)
ACGGATGTTACCCGTGTCGCGCTTGCGACGAGAGCGTTTCCCGGCAGCCA
CACCGCCGAGGACATCAAACCCTGGATCGAAGCGCTCACGCTGGAGTACT
TCAAGGACTTGATCGGGCCGTCGGTCCAGCCCCACGACGTCTTCCTCGGG
TTCACGGTGGATCAA
back to top