mRNA_P-littoralis_Contig19.106.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.106.1
Unique NamemRNA_P-littoralis_Contig19.106.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: A0A6H5KZI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI1_9PHAE)

HSP 1 Score: 511 bits (1317), Expect = 1.700e-166
Identity = 295/453 (65.12%), Postives = 339/453 (74.83%), Query Frame = 2
Query:  830 TAVTGGVADVSEPHAQTAGNVSTGRAKNATSGTDLNAGKTIKRRRPTGSGETSSRTVTGGTAPPPKLRRVGGTGXXXXXXXXXXXXXGKPRKLKRKPRSPSS-GGEGAAPGVKALVVTDDMELEDMMSLVKDVLERLGETERELRKLRKEGSLAKPSRSEVRDRKFVIDTRAKMIGAAFVGSVAGMVVGWSVLPNLWLVGAVTGALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSKYTETVAKLSKEALELDRQYKIRQKALRAGKRLTKLSRRVGSSAAKEATNFAGTASDWGTGQLRQWGLLGEDDLDAADRKKSGVFGGFMKKGGGKGGGRGVKRPLGFSMLLDGVFGERRRSIYSAPPAGGTRKPGYRGDPVIPARIRHLFMTSKQIRDERLQKYRVGFMGTRRSRKFDKND 2185
            TA + G+  VS+  A+  G  S G A    +G  LN  KTI+RRR  GS   SSR    GT+ PPK RRVG T              GK RKL+R    P S  G G   GV+A+VV  DMEL +M  ++  VLERL ETEREL++++KEGSLAK +RSEVRDRKF+IDTRAKM+GAAF GSVAGM+VGWSVLPNLWLVG VTGALAFAA + SSTGTVG ICSTCGIQVAL+YKD+RDWWEQTVFLYKTGKLSYTYWR FERYDQAWGLS+KYTETVAK+SKEALELDRQYKIRQK LRAGKR+T++SR+VGSSA +E T  AGT SDWG  +LR+WGL+G+D      R K        K+G G     G KRPLG S++LDG+FGER RS+YSAPPAGGTR   Y+ DP+IPARIRH+FMT KQIRDERLQKYRVGFMG R  R FDK+D
Sbjct:  142 TAASEGMTGVSDLDAKE-GKDSAGHANGPMTG--LNGSKTIRRRRINGSSTPSSRASAPGTSRPPK-RRVGVT-----PTTSGSGAVGKKRKLQRPRSGPGSVSGGGGGRGVQAVVVRGDMELAEMSEMMSLVLERLSETERELKRIQKEGSLAKTNRSEVRDRKFIIDTRAKMLGAAFAGSVAGMIVGWSVLPNLWLVGGVTGALAFAALSRSSTGTVGTICSTCGIQVALMYKDVRDWWEQTVFLYKTGKLSYTYWRVFERYDQAWGLSAKYTETVAKVSKEALELDRQYKIRQKTLRAGKRITRISRQVGSSAKQEVTTLAGTVSDWGGNKLRKWGLMGDDLDPRRKRNKLTELLKLKKRGDG-----GAKRPLGVSVVLDGMFGERSRSMYSAPPAGGTRIKTYKADPLIPARIRHMFMTKKQIRDERLQKYRVGFMGMRVPRSFDKDD 580          
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: D7FLU1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU1_ECTSI)

HSP 1 Score: 481 bits (1238), Expect = 7.970e-157
Identity = 254/343 (74.05%), Postives = 290/343 (84.55%), Query Frame = 2
Query: 1157 GVKALVVTDDMELEDMMSLVKDVLERLGETERELRKLRKEGSLAKPSRSEVRDRKFVIDTRAKMIGAAFVGSVAGMVVGWSVLPNLWLVGAVTGALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSKYTETVAKLSKEALELDRQYKIRQKALRAGKRLTKLSRRVGSSAAKEATNFAGTASDWGTGQLRQWGLLGEDDLDAADRKKSGVFGGFMKKGGGKGGGRGVKRPLGFSMLLDGVFGERRRSIYSAPPAGGTRKPGYRGDPVIPARIRHLFMTSKQIRDERLQKYRVGFMGTRRSRKFDKND 2185
            G KA+V   DMEL +M  ++  VLERL ETEREL++++KEGSLAK +RSEVRDRKF+IDTRAKM+GAAF GSVAGM+VGWSVLPNLWLVG VTGALAFAA + SSTGTVG ICSTCGIQVAL+YKD+RDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLS+KYTETVAK+SKEALELDRQYKIRQK LRAGKRLT++SR+VGSSA +E T  AG+ASDWG  +LR+WGL+G DDLD   R+K       +K    K GG   KRPLG S++LDG+FGER RS+YSAPPAGGTR   ++ DP+IPARIRH+FMT KQIRDERLQKYRVGFMG R  R FDK+D
Sbjct:  102 GSKAVVAKGDMELAEMSEMMSLVLERLSETERELKRIQKEGSLAKTNRSEVRDRKFIIDTRAKMLGAAFAGSVAGMIVGWSVLPNLWLVGGVTGALAFAALSRSSTGTVGTICSTCGIQVALMYKDVRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSAKYTETVAKVSKEALELDRQYKIRQKTLRAGKRLTRISRQVGSSAKREVTTLAGSASDWGGNKLRKWGLMG-DDLDP--RRKRTKLTEILKLKKSKVGG--AKRPLGVSVVLDGMFGERSRSMYSAPPAGGTRIKTHKADPIIPARIRHMFMTKKQIRDERLQKYRVGFMGMRVPRSFDKDD 439          
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: A0A836CAQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.010e-19
Identity = 71/189 (37.57%), Postives = 100/189 (52.91%), Query Frame = 2
Query: 1166 ALVVTDDMELEDMMSLVKDVLERLGETERELRKLRK---EGSLAKPSRSEVRDRKFVIDTRAKMIGAAFVGSVAGMVVGWSVLPNLWLVGAVTGALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSKYTETVAKLSKEALELDRQYKIRQKAL 1723
            ALVV   M  +D  +L+++VLERL   E++L++++K   E  +  PS  + R RKFVID RA                                                        +VAL+YKDI+D+++QTVFLYKTGKLSY YW  ++ YD+ + L++KY   +A++SKEA E+DRQYKIR KAL
Sbjct:   87 ALVVHKGMTDKDTSALLQEVLERLNMAEKDLKQMKKKMGENGIEVPS-GKGRSRKFVIDKRAT-------------------------------------------------------KVALVYKDIKDFYDQTVFLYKTGKLSYQYWSMWDDYDRRFQLTAKYNGFMARVSKEAYEIDRQYKIRNKAL 219          
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: A0A7S3YL52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL52_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-13
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = 2
Query: 1352 GAAFVGSVAGMVVGWSVLPNLWLVGAVTGALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSKYTETVAKLSKEALELDRQYKIRQKA 1720
            G+    ++ GM++G SV  NLWLVGA  GA  F       +G +G      G+ VAL Y D+  +++ TV+LYKTG L  TY++ FE  D+ + +  KY   VA++  E  ++DR++ I +K+
Sbjct:   50 GSVAACTLIGMIIGKSVSSNLWLVGAAAGAY-FGTITAKQSGLIGVRVRKLGVWVALRYIDVAKFYQDTVYLYKTGVLGATYYKKFEELDKQYKIVDKYESAVARIQGEYAKVDREFDITEKS 171          
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: A0A7S4A9H9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A9H9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.190e-8
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 2
Query: 1352 GAAFVGSVAGMVVGWSVLPNLWLVGAVTGALAFAAFAHSST-------------GTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSK 1645
            G +  G   GMV+G ++LPNLWLVG + G+     + +  T               VG    +CG Q+A  Y  + D+W+   FLYKTG+LSY Y++ +E  D+ + + SK
Sbjct:  250 GTSVAGCFLGMVIGITILPNLWLVGGILGSF----YGYEITKIVSTEDNNLKDSNIVGKFLISCGRQLARAYLQLVDYWKGLWFLYKTGQLSYEYYKTYENLDKKFAVQSK 356          
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: A0A482S7I6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7I6_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 3.660e-6
Identity = 31/89 (34.83%), Postives = 55/89 (61.80%), Query Frame = 2
Query: 1379 GMVVGWSVLPNLWLVGAVTGALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSK 1645
            GM++G+S+L  LWL+G + GA   A+  H ++ T G      G+++A +  D+++ + Q V  Y+TGKL+Y   + +E YDQ + ++ K
Sbjct:  175 GMLIGFSLLDKLWLLGGIAGACWAASIVHRNSPT-GRFARKIGVEIARMLIDLQEKYNQAVIFYRTGKLAYVSSKIWENYDQKFSITRK 262          
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Match: A0A7S2S2B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2B2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.840e-5
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 2
Query: 1355 AAFVGSVAGMVVGWSVLPNLWLVGAVTGALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLSYTYWRGFERYDQAWGLSSKYTETVAKLSKEALELDRQYKIRQKA 1720
            AA  G+V G V+G SV P LWL+GAV GA   A  A  S G  G+       +        ++ W +  F+Y +G+L+Y + +     +Q + +S+K+ + V+K++    + + +Y+IR +A
Sbjct:   98 AAICGAVGGCVLGKSVSPRLWLLGAVLGACTAAIAAARSDGYAGSAARLVARRALEWVSFAKEKWAELAFMYNSGRLAYQWDKWLSEVNQEYDISTKWGKFVSKVA----DYEEKYEIRGRA 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KZI1_9PHAE1.700e-16665.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLU1_ECTSI7.970e-15774.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAQ6_9STRA6.010e-1937.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YL52_HETAK1.450e-1337.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4A9H9_9STRA2.190e-835.14Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A482S7I6_9ARCH3.660e-634.83Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2S2B2_9STRA2.840e-531.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:472459..483351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3221
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001260.1
Cds size2100
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.106.1prot_P-littoralis_Contig19.106.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 472547..482318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.5214467-UTR-P-littoralis_Contig19:472458..4725461680789910.5214467-UTR-P-littoralis_Contig19:472458..472546Pylaiella littoralis U1_48UTRP-littoralis_Contig19 472459..472546 +
1680789910.6260438-UTR-P-littoralis_Contig19:482318..4833511680789910.6260438-UTR-P-littoralis_Contig19:482318..483351Pylaiella littoralis U1_48UTRP-littoralis_Contig19 482319..483351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.5381176-CDS-P-littoralis_Contig19:472546..4734041680789910.5381176-CDS-P-littoralis_Contig19:472546..473404Pylaiella littoralis U1_48CDSP-littoralis_Contig19 472547..473404 +
1680789910.5508444-CDS-P-littoralis_Contig19:475811..4761651680789910.5508444-CDS-P-littoralis_Contig19:475811..476165Pylaiella littoralis U1_48CDSP-littoralis_Contig19 475812..476165 +
1680789910.558854-CDS-P-littoralis_Contig19:476592..4766871680789910.558854-CDS-P-littoralis_Contig19:476592..476687Pylaiella littoralis U1_48CDSP-littoralis_Contig19 476593..476687 +
1680789910.5671575-CDS-P-littoralis_Contig19:477092..4772101680789910.5671575-CDS-P-littoralis_Contig19:477092..477210Pylaiella littoralis U1_48CDSP-littoralis_Contig19 477093..477210 +
1680789910.575972-CDS-P-littoralis_Contig19:479141..4792051680789910.575972-CDS-P-littoralis_Contig19:479141..479205Pylaiella littoralis U1_48CDSP-littoralis_Contig19 479142..479205 +
1680789910.5855381-CDS-P-littoralis_Contig19:479603..4797511680789910.5855381-CDS-P-littoralis_Contig19:479603..479751Pylaiella littoralis U1_48CDSP-littoralis_Contig19 479604..479751 +
1680789910.6021652-CDS-P-littoralis_Contig19:481268..4816141680789910.6021652-CDS-P-littoralis_Contig19:481268..481614Pylaiella littoralis U1_48CDSP-littoralis_Contig19 481269..481614 +
1680789910.6135902-CDS-P-littoralis_Contig19:482201..4823181680789910.6135902-CDS-P-littoralis_Contig19:482201..482318Pylaiella littoralis U1_48CDSP-littoralis_Contig19 482202..482318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.106.1

>prot_P-littoralis_Contig19.106.1 ID=prot_P-littoralis_Contig19.106.1|Name=mRNA_P-littoralis_Contig19.106.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=700bp
MHTSNKSDPMAKAVSQPRNRHIVAVIALLVSSAEGFAPRQQQTHPLRYNH
QSAFSAATGAGRSLHPWGGVGYSCRGCQRRQACGGGAGIDERLRPVGLLR
GTGLALGDATGKAQPERSPLHFTARRGTSNPGWRSASASSSSSSSSSSSR
RRRSSSSPMMALHFPKPPKLPKLPSSGDGKTLDGGRKSALGKKAGTSAAS
ASSPAGSKDSSNSSSSSGNSSSSGSSSSSTSVTTRDTSSVAGKTGTRTAV
TGGVADVSEPHAQTAGNVSTGRAKNATSGTDLNAGKTIKRRRPTGSGETS
SRTVTGGTAPPPKLRRVGGTGTGTGTGTGTGTSVGKPRKLKRKPRSPSSG
GEGAAPGVKALVVTDDMELEDMMSLVKDVLERLGETERELRKLRKEGSLA
KPSRSEVRDRKFVIDTRAKMIGAAFVGSVAGMVVGWSVLPNLWLVGAVTG
ALAFAAFAHSSTGTVGNICSTCGIQVALIYKDIRDWWEQTVFLYKTGKLS
YTYWRGFERYDQAWGLSSKYTETVAKLSKEALELDRQYKIRQKALRAGKR
LTKLSRRVGSSAAKEATNFAGTASDWGTGQLRQWGLLGEDDLDAADRKKS
GVFGGFMKKGGGKGGGRGVKRPLGFSMLLDGVFGERRRSIYSAPPAGGTR
KPGYRGDPVIPARIRHLFMTSKQIRDERLQKYRVGFMGTRRSRKFDKND*
back to top

mRNA from alignment at P-littoralis_Contig19:472459..483351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.106.1 ID=mRNA_P-littoralis_Contig19.106.1|Name=mRNA_P-littoralis_Contig19.106.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10893bp|location=Sequence derived from alignment at P-littoralis_Contig19:472459..483351+ (Pylaiella littoralis U1_48)
GAAAGTTGTTCTGCTGTTCCCTCTCCTGGGGCGGTGGTCGCTGATCGTAC AGCAGTGCTTTGGAGTATGATCACCACAGCAGTCTTGAATGCACACTTCG AACAAGAGCGATCCGATGGCGAAGGCCGTTTCGCAGCCACGGAATCGGCA CATTGTTGCCGTGATCGCTCTTCTCGTCTCTTCTGCGGAAGGCTTCGCGC CGCGGCAACAGCAGACGCACCCGCTGCGATATAATCATCAGTCAGCATTT TCAGCAGCTACGGGAGCAGGGCGGTCTCTACATCCATGGGGTGGGGTCGG CTACAGCTGTCGCGGCTGCCAACGACGGCAAGCGTGCGGTGGTGGTGCTG GTATCGATGAGCGACTGCGGCCAGTAGGCCTGCTGCGTGGAACGGGGCTA GCGCTCGGAGATGCAACGGGAAAAGCGCAGCCAGAAAGAAGCCCGTTACA CTTCACTGCAAGGAGGGGCACGAGCAACCCGGGATGGCGCTCCGCCAGCG CCAGCAGTAGCAGCAGTAGCAGCAGCAGTAGCAGCAGGCGGAGAAGGAGC AGCTCGTCACCAATGATGGCATTGCATTTCCCGAAGCCTCCCAAATTGCC AAAGCTTCCATCCTCCGGGGACGGAAAAACTCTTGATGGGGGACGGAAAT CTGCACTGGGGAAAAAAGCAGGAACCTCGGCGGCCTCTGCCTCCTCCCCC GCTGGCTCTAAGGACAGCAGCAACAGCAGCAGCAGTAGCGGTAACAGCAG CAGTAGTGGCAGCAGTAGCAGTAGCACATCGGTAACGACGAGGGACACAT CGTCGGTTGCGGGGAAGACGGGGACACGGACCGCCGTGACCGGGGGCGTG GCCGACGTCTCGGAGCCGCACGCACAGACGGCGGGGAATGTTTCCACGGG GCGTGCAAAGAATGCCACCAGTGGGACGGACCTGAACGCGGGCAAGGTGA GCGAGCAGTGTTTTTTTTTCATGTTGAAGTAGAAAGTGTTACACACGAAG CACTTACCTTTCCTTGTACACCTCTTCAACCTTCGGTATGGAGTGGGTGC ACCAGCCGTGAGGGGTCTGGGCCCGGATTAACGGAGAATTGAAAAAATCG AAATTGCGAAAACGAAAACGAAATAACTTCTTCGTTCTTCTAAATAATAA TAAAAAAATAGTTGTTGAGTACAAGTATTAACGGAACGAGCATCCTTTTT TTTTTTCGCGCTGCTGCAGCGGACCTGGTACCAGGGTGGAGAAGAAGAGG GGATACAGCAGTACACGAGAGGACACCGATTGCGATGACTTTTGATATTT TTTGGATGGCTGATTGCTTGTTTCCCGTCACGCTCGATACTCACCGACCC CACACCTTGGGTGTTCCCGATGGACATTAGACCCATCTCTCTAGGCACGC AGTTGGTCGGGAATTTCATCCGTTTTCCGGCGAGATATCAGTGGAAACGT GAACTTGGCTGCTTGCGAACTCACCCGAAAAAGCGGCTCAAAGCAAAAGC GGGTCGTTGTGCACGAGTTGAAAACTTTTTTCGCGTCACGCTTGACACCC CACTGCCCCAAACCTTGGGCATTCCCAATTCACTTCAAACCCACCTCTCT AGACATGCAAATAGCAGGGAATTTCGTCGCTTGTGTCGCGAGTTATCAGT CAACATGTGAACTTGTCTGCTGTACAAAAGTCTACCGGAGATACCTCGCA GAGCTGAAGCGTCCCCGCCTACAAGCCTAGGAGGCGGTATTTCGTTTTCG TTTTCGCAAAAAAAAGGTCCAAAACACTTTATTTTCGCGAAGAAAAAAAC GCATTGCCGCCTGCTCGGTGTGTGCTGAATCGGAGACACGCCTCCTTCAA AGAAAATAACGCCTCTTTCTCTTTTTTACTCGGACCAATCAGAGCCCAAT TTCGTTTTCTTTTTCGCAATTTCGTTTTTTTTTTCAATTCCCCGTTAATC GGGCTCTCACACAGGCAAAAAAGAGGAAGGTTACAAAATAGTTTTCTTTT TTTTTCTCCACGCACCAGGGGAAAGGATTGCTGTACGACCCGACTCGCAT TAAAAACCAAAGAAGGCACGTACCGCAGGAGGAAGGATTGGGAAAAATGA AAAATGACAAAGTTCGTGTGTGACCTTCCTCCTGTGTGACCCCGGCGGAT GCACCCACTTCATACCGACAGGTGTAGACTGGTGCCCAGAATAAATGGGA TGACAACACACACACACACAATCTTCTGTGGTGCGCGTGTGTGTGTGTGC AGTGTGTGTTGTCATCCCATTCATTCTGGGCACCAGTCTACACCTCGCGG TATGAAGTGGGTTCGTCAGCCGAGGTCACACAGAAGGAAGGTCACATACG AGCTTTTTTGTTTTTTATTCTGTCTTTATTGCCCACACCTTCCTCCTGCG GTGCGTGCCTTTGGTTTTTATTGCGAAGTGTGTGTGTTGTCATCCCGTTT ATCCTGGCAGCAGTCTACACCTACCTTTCGGTATGAGGTGGGTGCGTCAG CCGGGGTCACACAGAAGGAAGGTCACACACGAGCTTTTTCGCTTTTTATT TCGTTCTGTTGCCCAAACTTTCCTCCTGCGGTACGTGCCTTTGGTTGTTT GATGCGAGTCGGGTACAGCAATCCCTTCCCTCTGTTTACTCACGAGTAAT TCGCTTTCCACCTTAGAGGCGCAAGAAACGCTCTTAGAGAGAATCGGACC TACGACCTTTCAACTAGTAGGTCAACGAGATAACCACTAGAGCACCGCGG CGACCGGATACAGTACTCGAGGAAAAACACTTGGCAGAAGTTTTTCCTGT GGCACATGACACCAACACCGTGGTACCAAGCGAAGCGTTCTACTGGTAGG ATTTAGTCGTTTGCGTGATCAGCATTGAGTTGGTGGTGTATCGCCTCTGT GCACGGAGATGAAACAGATGGACGTTCGGCCTTCTGTTTTGTTCGCGACC TGCCTTCGGTGTTCGGTTTTTTGTTTCCTGCTGTATGATGCTTCGTATCG TTTCATACAAGCGCTCGGGTGAGATGGGATGACAACGCACAATACGCACA CACAACGCAGTGCGGCAGTGCTTCTTTTGCGCGGGTAATCCTTTCCGTTC GTGAACACGATCGATTGATCTTACTCGGGTAGGGGCAGCTCTTTCTCAAG AAGCGCGAGCGAAGAGACATTGACCCCGTCGATCAGTATCTATTTCCGGG TACCGGGTACACCAAACACCTTTCCCCAAGGCGGTGCCCCGACCCCCCCC CCCGTCCCCCCCCCGTCACCCCCTTTCCTCCTTCCGCAAAACGCCAACTC ACATTCTGATTGATGTGCGTGGCTGGCTGGTGCGCGCCTTCTTAACAATC CAGACTATAAAAAGACGCCGCCCTACCGGCAGCGGCGAGACTTCGTCGCG AACGGTCACCGGTGGAACCGCACCTCCCCCCAAGCTGAGGCGCGTCGGCG GCACGGGTACGGGCACGGGCACGGGCACGGGCACGGGCACCAGCGTGGGC AAACCGCGAAAGCTGAAACGAAAGCCGAGGAGCCCTTCGTCGGGGGGGGA GGGGGCGGCGCCTGGCGTTAAAGCCCTTGTAGTGACGGATGACATGGAGC TCGAGGACATGATGTCGCTCGTGAAGGATGTTCTGGAGCGGTTGGGCGAG ACCGAGAGGGAGCTGAGGAAGCTCAGGAAGGAGGGATCTCTGGCGAAACC CAGCAGGGTGAGGGGAGATGGTCGCGGGTGGCGGGGTTGTTGCGGATTGC GAGACTGCTTGCCGGCGAGGCCTTTGGGGTTCTCTCGCGTGTCGCCACAA GCAAGCCAAACATATGTGGCGATTTGAGCTGGAAACTGTCAAGTGGTGTG CGATGCCCGGATTGTGTGCGTCAAGAGTTTCCATCTCACCCGCACATTGC TCGGACATCGATGGTCTCCCTCGCATATTCGTGTTCATTGTTCCGTGTAC AAGTACATGTACACATCATACGGCTGTGCCGCCGATCGTGAACCCACCGC CTTCCCTACGGTTGAACAAGCCAAGGAGTACTAATCTAATCTCGCCGCCA ACTTTCCGCCACATTGCCATCCCCCCCCCTATATACCGATGCTTGCCTGC CAAACGATCTGCAAAACATCTGGAATTTTCGTAGTCGGAAGTCAGGGACC GTAAGTTCGTTATCGACACCAGGGCCAAGATGATCGGGGCGGCGTTCGTG GGCAGCGTTGCGGGGATGGTCGTCGGCTGGTGAGCGAACCAACATTTGCG TGCCGCCGCTCTGCAAGCCCCCGCAACAGCTGACTTCGCGCCGTGACACA TACCCTCGACGAAGTTAGTCAGATTTGACCCACATTTTCATCCACTATCA AATCTAAACTTTGTCGCTTAATCTTGAGGGTCAATGGACTAAACACATGC ACCTAGTACCTAATTACTTCTTTTTTTTTTCTATTCGAGGGTGCATGCAT ACGTTTTTTTTTTTTTCAAACACAGCACGTGTCGGTCAGTCTGTCTGTCT GTCTGTCTCTCTCTCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTAG CTGGCTGGCTGTTTGTCTGTGTGTGCCCACTTTTATCTGACCGGATGGAT CGTTTCCTGCTCCGTGCCGACCGAAACGCTTTAGGTCCGTGTTGCCGAAT CTGTGGCTGGTCGGGGCTGTGACGGGAGCGTTAGCCTTCGCGGCCTTCGC GCACTCATCGACGGGTACAGTGGGCAACATCTGCTCCACGTGCGGGATAC AGGTGCTACACTGTTAGAGCTGCGCCTGACCCCCCAAACGACACACAAAA TATGGCATGATTATTCGTTTGTTTTTTGGTCGGTGACCAGGAAATAATGT TCTTCCGCCGGTCCGGCTGATGACGCCAAAACTCTTTTTTACTTGAATAA ACATTGCTTTCAACACAAACTCGCAACGAGTAATACTCGACTTAGGCAAA CAGCTGGCTCAATCAGTTCCGAACATATCTGTGTACATGGGAGATCTAGT GTCTGTCCGCAAAGTTTTACTCTTGGATGTTTGTGCGCCCTTTGCGACTC TAAAACCCAGTTATTTTCGGAGTTTTTCTTCCCTTTTCAGCGGCTATCTC TTTTTGGTTCAGTCCGTTCGCAAATCCTTTGCGTAGAGACTTTAGCTAAG GCATCTTTATCTGGTAACGCAGCCAACCACGTGCCGACCCGCGTAGTACC AACGGAGCGCCCCAAAGTGCAAAAAGAGCACTCTGGGCTGAAAAAGGCAA GGTCAAATCGTCAGAAAACACTCAGCTCAAAACGATCCGTTCCGAAAAAA TGGACGTGAAGTACGTTTTCGTTTTGGCAGTTTTGGTCTGAAATAAAAGC TACATAAGGACGCCGAGCTCACGCACCGCCATGGAAGCCCCATCTACTCG CGGCAGTCTTGCAGCAGTCTCTCACGCCCGTGTGGATGTACCACTGGGCA GATGTTGCAAAGGACAGGTGCAGGTGCTATGCAAGACAAAGGCAAGTTGG TGTGTTTTCGGTGGAACCAAGAAGCATGACAGAGGGAAGTCGGAACAAAA AAAGGGTCGAAATACGCCGAAAACACACCAACTTTTTTTGCTTCACACAT CACCCACACGAGCTTCTATTCGTGCACCTGCCCGGCGGGTGGCACTACAC AAGCGCAGAAGACTGCTGTAAGTGGGTTAGGGCTGCTCGTGAACTCGGCG CAGCAGAAATTTGCGAGGGGACGGAAACTGCAAAACAAGAACCAAGTCAA CGAAAACATACAAGTACACTTTTTTACTAGCCACGCACACATCATTTGTT TCCTCGTCGGAACGAAGTGAAAGAAGAAGACCGAAAATACGCCGAGAACC AACCACCTTGTTTTGCTCTACATGGCACCCACAAAAGCGCCTATTGGTGC ACCTGCCCGGCGAGAGGCATCGCACGAGCGTAAAAGGCTACTGCTGTGAG TGGGTGGACGGTCGTCACGGTGGGTGAACTTGAAGCAGCAGTGTGGATGA CACAGGCATTCAAAAGCCAAGAAACCAGTCCGTACAAATACATCTGAAGA CCACGCGCACACAACACCATTTGAACTTCATTGTCTCGTTCTCGTCAGCT GCTCTCGCTGCTAGCTGCTGCTGCTGGCGATGGACAATGATAACCTGCAA ATCGCCGTCAAACAGTGCTGCTGTGCTGTGTATTCGACCTGTGTTACTAC TGCTGTGCTGGGCGTAGAGCAGTGGGAAGCTTGTGTGATCGCCATGATAC GTGTGTGACCAACAATTTTGTGTCTGGAGGTGTGAGAGGTGAGAGGCCTG GACGCGAGTGCAAATCTTTGAATCTTTGAATCTTTGGCTTACGTACGCGC GTAAATGATCCCCAAAAGACGTGTTAACAAAAAGAAAAAGATAACTGTTC AGCTTTCTCGGAACACCATCGGGACAGATTTAGTACCCAAAAAGAGGGGT CAGGCGCAGCTCTAACTGTCACCCTCAACATTATGCGTGCGCATATCACT TTCACACGCCGCTGCCGCTGCTGTTTCCGACGCCGCTGCTGTTTCCGCGG CGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTTATTGTCGTTTTGC TCCCGCTGATGCCAAGGCTGTCGTTCTAAGCTTCCCGTGCGGCCTGCCCG CTCCCTCCCCCCCCCCCCCCTTCCAAAAAAAAGGTGGCCTTGATTTATAA AGACATCAGGGACTGGTGGGAGCAGACGGTCTTCCTGTACAAGACCGGTG AGTCGACGAAGGGAAGGGATTCTAAAAAGTAGCGGTACTGATTGTACACC TTGTTTCGTCTTCAGTTTTTTGTCGGAGCGATACAGTAGCGTAAAAGCCG TTGGAAGTGGTGGCCAGTGGCGGCCGGCATCTTCCTGGCACTTCGAAGGC GGACACACGCTGCGTGAATACTTTTACTCTGTGACCAACCGAATCGAGTA CGCCGTCACCGTTATCTCTTTAATCGGTATTCCCGTACGCGCGACTTCCC TCAAAACGTCATAGTCCATGGCACCCTTTCTTTTTTTTGCCGTGCTGACC GTTTTTTTTTTTTTTGTGGTGGAACAGACCACCGCCTCCGCCTCCGCCAC CTCCGCCGCCGCCGCCGACATAAAAAACCAAACAATAATAAACAGGAAAG TTGTCGTACACCTACTGGAGGGGTTTCGAGCGTTATGATCAGGCGTGGGG GTTGTCTTCGAAGTACACCGAAACCGTGGCAAAGCTTTCGAAGGAGGCGT TGGAGCTAGACCGACAGTACAAGATCAGGCAAAAAGCTCTGAGGTAAGTG TGGCGTCCAGAGGGCTACTGTATGGTGGGAGTCGAACAGCTGGACGCCTC TACGAAGTTTAGTTTGTCTGGGGTGAGCAAGTACGGCGTGTGGGTGTTTG TTGGTCGATTTTTCTTCTGCTCTTCCGTGCCGATTGGTGCGATAGCGAGT ACAGCAGTAGAGTGCTAGATTCGGCAAGAATACTCCTGAGGTAAGCACGG TGCGCAGACGAAGTTCGATTCGTCTGGGGTGGGCAGGCACGGCGTGTTGG TGTTTGGTGGTCGATTTTGCTTTGGTCTTTCCATGCCAGTCGGTGTGATG GCGAGGACAGCAGTAAAATGCGAGATTCGAACAGAACACTATTGAGGTGC GGTGATGGGAGGGCTATCATATAGTAGGAGTCGAACAGTTTGACGCCCAC AAAGTTTGATTCGTCTGGGGTGATCAAGCACGGCGTGTGAGTGTTTATTG GTCGATTTTTCTTCTGCTCTTCCGTGCCGATTGGTGCGATAGCGAGTACA GCAGTAGAGTGCGAGATTCGACAAGAAATCGCCTGCGAGTCATGTGAGGG GTGCAGACAGCGACTGTTGGAAAGACAGTATGGCATTTCACAAGATTCGG CAAGAAAACTCCTGAGTCTAAGCAAGGTGTGCAGACAGCGACTGTTGGAA AAACATTACAACATTTTATTCTGCTCAAGGTAAAGTGTGCAAGGAGCAGG GTGCAAGGGACCGGTCGCAGAAAAGGGGCCGTTCCCGCTAAGATAGGGAG CGCAGAAAGCGAGTGGTCGAAAAACAGCACACACAACAGTAGATCGAACC CGGCTTCAAGGACACCCCTAGGTATCGATATCGTCCCAGAACAATTTTTC TTGCGCGAGGACGTGCCCTTAACATAAGATTCAAGGGAATGACAATCACG CTGGCGATTATGCATCCTGAGGGGCACTTGGTTCTGGAGAAACACGTGTG GTTCAAGTACGAGGAGTTTCCATGTGAAGGGTGTCGTGCAGCCAGCAGGC ACAGGGGTAGGCTGGTCGATTTAGCGCTTTCATGCGGACCGGTATGGTAC GGCATCGAGTGGTGCAAACAGTACTAGGTTCGGCCGAACAATGTCGCGTG TGCAGAGGCGAAAAAAAACGAGGAGTAATGCGCCAAGTGTTACACGGCGG TATTTGGTAGTCAGGGACTCCACCCACAGGACGCAACGACAAGCCGCGAA GCAGCGCGATGTCAGACGTTCGGCTTCTCTCTCCCTCCGTCCGGGTAACC ACCACGGCTCACGAACATGTGTGTGCTCACACGACTGAGAGTGCTTCGAC CGTCAACGGTAGATGTCCCGAGACATATCATATCACCTCCATGTCGTGCC CTCACTCGACTCCCCCCCCCCCCCGCCCGTGCTTTTTCCCCTCGCTCTGT CTGCGCCCGTTTCCACGAATAACCACACTTCTTCTACACGGCCGTGCTAT ACCCCCGTCACTCCCGACAAAACACGCCACACACACTCACACACGAAACA AAAAAAAAAGAGCCGGCAAGCGGCTGACCAAGCTTTCCCGACGGGTGGGA TCCTCCGCCGCAAAAGAAGCCACGAATTTCGCGGGCACCGCCTCGGACTG GGGGACTGGCCAGCTGCGGCAGTGGGGGCTGCTTGGGGAAGATGACCTCG ACGCGGCGGACAGAAAAAAGTCGGGCGTGTTTGGTGGGTTCATGAAGAAG GGCGGCGGTAAAGGCGGCGGCAGAGGCGTGAAACGTCCCCTGGGGTTTTC CATGCTCTTGGACGGCGTTTTCGGAGAGAGGAGGCGGTCGATATACTCGG CGCCGCCGGCGGGAGGTACGAGGAAGCCGGGCTACCGGGGCGATCCCGTC ATTCCGGTGAGAACCGACGGAGCAGATTGGATTTCTGCGGGAACATGGTG CGGTGGGCCTGTCTCTCCCTTTTCTTTCTGTTGCGTGTCTCTCTCATCTC TCCCGTGTCTCTCTCTGTTTCTCTCTGTCTATTACGCTCTCTCTCTTCTT TCTCTATTTTCTTTTGATCTCTGTTTCCTATCTCAAGTGTCTCCCGTTTC TTTCGCGACGACGATCGATCACCGGTCTCGCGGGGTTAGCGGCGCTCGCT ACGCAAGTGCTTTCCGGGGGGGGGGGGGGGGGGGGCAATGTTCATGTTTC CTTGGGCTGAACAACCTGCAATCCTGTGTCCTAGGAAGAGGAATAAGGAA CATTCCCTTCTGTGTCTTAAGGGGAGGAATTTTCCCGTCCCCCGTCCTCC ACCTTCTCGGTAGACGGCCGCCTCAAGGATGGCTTCATACCGCCGCGCTC GTTGTGTCATGGTTTGTATGTGTTTTTTATTTATGCTTCATATTGTGTTC GTTTCTTCATTTATTTTTAATTTTTTAATTTCGTTTCTGTCCTGTGCGTG CGTGTGTGTTTGTGTGTGCGTGTTTCGTTTTTGTTATTCCCAGGCCCGCA TCCGGCATCTGTTCATGACCTCGAAGCAGATCCGCGACGAGAGGCTTCAG AAGTACCGCGTCGGCTTCATGGGGACGCGCCGATCTCGAAAGTTCGACAA GAACGATTGAGAGACGTTGATATAATGGCGTGTTCCGAGGATAGCCCGAA AGAGTATTCATCCTAAACCTTACCCTGTCCTTGAACCTTGATCCGGGGGT GCTTTCCCCCGGGATAACCCCCACCGCGATGCCATCTTGTCAGCGGAGCG CACCCACCCTCTTACTTAGGTGTAAAAAGACAAAAGACCATGGCATCCTC TCGGTAGGAATCCTGTGTTGGTCCTCTGTTGTTCGTTGATATCATACCCA AGGGGGCACGTACTTGGTATCCCGTGGTAAATGAGATGGCCTCACTTGTA GCCATTTCTTTCTCCGCCAACGCGTGTTGGAATGCCATGTCCATGGTAGG TACGAAGCGACATTTGATTCGCTGGGACGCCGCCCGAACACGAGTGATCT GATGGTATGTTCCCAGCGACCACGTGTGCGGGGGGTTGATCTGCTTATAG AGCCCCCTCAGCCCCCTCAAGTAAATTGTGAATACCTCATGTGTTGTATA CGGTGCATGTCGCACCACTACTGTGGTATTGGAGGTTGTCCTTTGGTGAC CCAGTCGAGCGCGCGAAAATCTTATGAAAAAATAAAATAAGAACGCCTCT TTGTGTCTGTAAGAAAAACCAGAAAGCCCTCTCTATACATGATACGTGCG TGTTCGTGACGTTGTGAACACGATCTGTCCAAAATCACGTTGTTACCGTA ACGAGCTACGGTAGGTCGGAAGCAAACGGGATCATGAGGTGCGAGGCCCT GCAAAAAATAGGGCTGAATCGTTGGCGGCAGTACAGCAGCAGTAGGCGTA CGTTGCGCACACCGCTGAACGAGGTATCACATGAATGAGTCGAAAACATT TCGTGGGTTGGTATGCAGGGAGCCGTCGCAACGATGTGAAGTGAGGTCAA TGAAGATGATTGTTCTTCGATGAGGCGGTGTCTTCGTGGACATGGTAAAT GTGGCCAAAATCCACAGCAGGAGTTTTCTAGTGAGGTGAGTATTCTCCAA CAGCCACAACTGAAGCTCAACCCTAACTTGAGGGAAATCAGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig19:472459..483351+

>mRNA_P-littoralis_Contig19.106.1 ID=mRNA_P-littoralis_Contig19.106.1|Name=mRNA_P-littoralis_Contig19.106.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2100bp|location=Sequence derived from alignment at P-littoralis_Contig19:472459..483351+ (Pylaiella littoralis U1_48)
ATGCACACTTCGAACAAGAGCGATCCGATGGCGAAGGCCGTTTCGCAGCC
ACGGAATCGGCACATTGTTGCCGTGATCGCTCTTCTCGTCTCTTCTGCGG
AAGGCTTCGCGCCGCGGCAACAGCAGACGCACCCGCTGCGATATAATCAT
CAGTCAGCATTTTCAGCAGCTACGGGAGCAGGGCGGTCTCTACATCCATG
GGGTGGGGTCGGCTACAGCTGTCGCGGCTGCCAACGACGGCAAGCGTGCG
GTGGTGGTGCTGGTATCGATGAGCGACTGCGGCCAGTAGGCCTGCTGCGT
GGAACGGGGCTAGCGCTCGGAGATGCAACGGGAAAAGCGCAGCCAGAAAG
AAGCCCGTTACACTTCACTGCAAGGAGGGGCACGAGCAACCCGGGATGGC
GCTCCGCCAGCGCCAGCAGTAGCAGCAGTAGCAGCAGCAGTAGCAGCAGG
CGGAGAAGGAGCAGCTCGTCACCAATGATGGCATTGCATTTCCCGAAGCC
TCCCAAATTGCCAAAGCTTCCATCCTCCGGGGACGGAAAAACTCTTGATG
GGGGACGGAAATCTGCACTGGGGAAAAAAGCAGGAACCTCGGCGGCCTCT
GCCTCCTCCCCCGCTGGCTCTAAGGACAGCAGCAACAGCAGCAGCAGTAG
CGGTAACAGCAGCAGTAGTGGCAGCAGTAGCAGTAGCACATCGGTAACGA
CGAGGGACACATCGTCGGTTGCGGGGAAGACGGGGACACGGACCGCCGTG
ACCGGGGGCGTGGCCGACGTCTCGGAGCCGCACGCACAGACGGCGGGGAA
TGTTTCCACGGGGCGTGCAAAGAATGCCACCAGTGGGACGGACCTGAACG
CGGGCAAGACTATAAAAAGACGCCGCCCTACCGGCAGCGGCGAGACTTCG
TCGCGAACGGTCACCGGTGGAACCGCACCTCCCCCCAAGCTGAGGCGCGT
CGGCGGCACGGGTACGGGCACGGGCACGGGCACGGGCACGGGCACCAGCG
TGGGCAAACCGCGAAAGCTGAAACGAAAGCCGAGGAGCCCTTCGTCGGGG
GGGGAGGGGGCGGCGCCTGGCGTTAAAGCCCTTGTAGTGACGGATGACAT
GGAGCTCGAGGACATGATGTCGCTCGTGAAGGATGTTCTGGAGCGGTTGG
GCGAGACCGAGAGGGAGCTGAGGAAGCTCAGGAAGGAGGGATCTCTGGCG
AAACCCAGCAGGTCGGAAGTCAGGGACCGTAAGTTCGTTATCGACACCAG
GGCCAAGATGATCGGGGCGGCGTTCGTGGGCAGCGTTGCGGGGATGGTCG
TCGGCTGGTCCGTGTTGCCGAATCTGTGGCTGGTCGGGGCTGTGACGGGA
GCGTTAGCCTTCGCGGCCTTCGCGCACTCATCGACGGGTACAGTGGGCAA
CATCTGCTCCACGTGCGGGATACAGGTGGCCTTGATTTATAAAGACATCA
GGGACTGGTGGGAGCAGACGGTCTTCCTGTACAAGACCGGAAAGTTGTCG
TACACCTACTGGAGGGGTTTCGAGCGTTATGATCAGGCGTGGGGGTTGTC
TTCGAAGTACACCGAAACCGTGGCAAAGCTTTCGAAGGAGGCGTTGGAGC
TAGACCGACAGTACAAGATCAGGCAAAAAGCTCTGAGAGCCGGCAAGCGG
CTGACCAAGCTTTCCCGACGGGTGGGATCCTCCGCCGCAAAAGAAGCCAC
GAATTTCGCGGGCACCGCCTCGGACTGGGGGACTGGCCAGCTGCGGCAGT
GGGGGCTGCTTGGGGAAGATGACCTCGACGCGGCGGACAGAAAAAAGTCG
GGCGTGTTTGGTGGGTTCATGAAGAAGGGCGGCGGTAAAGGCGGCGGCAG
AGGCGTGAAACGTCCCCTGGGGTTTTCCATGCTCTTGGACGGCGTTTTCG
GAGAGAGGAGGCGGTCGATATACTCGGCGCCGCCGGCGGGAGGTACGAGG
AAGCCGGGCTACCGGGGCGATCCCGTCATTCCGGCCCGCATCCGGCATCT
GTTCATGACCTCGAAGCAGATCCGCGACGAGAGGCTTCAGAAGTACCGCG
TCGGCTTCATGGGGACGCGCCGATCTCGAAAGTTCGACAAGAACGATTGA
back to top