mRNA_P-littoralis_Contig19.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.105.1
Unique NamemRNA_P-littoralis_Contig19.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:471762..472423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size663
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.467678-CDS-P-littoralis_Contig19:471761..4721001680789910.467678-CDS-P-littoralis_Contig19:471761..472100Pylaiella littoralis U1_48CDSP-littoralis_Contig19 471762..472100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.4872162-UTR-P-littoralis_Contig19:472100..4724231680789910.4872162-UTR-P-littoralis_Contig19:472100..472423Pylaiella littoralis U1_48UTRP-littoralis_Contig19 472101..472423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.105.1prot_P-littoralis_Contig19.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 471762..472100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.105.1

>prot_P-littoralis_Contig19.105.1 ID=prot_P-littoralis_Contig19.105.1|Name=mRNA_P-littoralis_Contig19.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MAPGESTGWPCNKCTFINEDEDATICGMCQDGTRAARKAKGRLRGATAMS
KARATATTASPPVISSFSDAMTAEQDGDSAKASSRDRTKNGDRKRRAGKS
GALNYEEEEGEEE
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mRNA from alignment at P-littoralis_Contig19:471762..472423-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.105.1 ID=mRNA_P-littoralis_Contig19.105.1|Name=mRNA_P-littoralis_Contig19.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=662bp|location=Sequence derived from alignment at P-littoralis_Contig19:471762..472423- (Pylaiella littoralis U1_48)
ACCAGGCTGCAACTTGATTGATATTCTGAACCCCCTCCACAGCAATCTGT
CTACAACCCAACACACGCCCGAGGCTCCTGCCGGCCAATGCTCTAGAGGT
GCGTCACCGTCGACCCTCCATTGTCAACCCTTTCCTATTCATGATCTTCC
GCTTCTCTGGGCCAAGACTGGTGTGGGATCTGCGTGAATGAATCCAAACT
CGTCCCACATCCGCACCAGGTGTGTGATATACTAAAAACAAATTTTGAAA
ACATTTGTGTTCAACGGGTGCAATAAAACCAGGGCCACGTCTCGCACAAG
GCTGCGCTGCGCGGGGGCGTCCGATGGCGCCGGGAGAATCCACCGGGTGG
CCATGCAACAAGTGCACCTTCATCAACGAAGATGAGGATGCCACGATCTG
CGGAATGTGCCAAGACGGCACAAGGGCGGCCAGGAAAGCGAAAGGGAGGC
TGCGGGGGGCGACGGCAATGTCGAAGGCAAGGGCAACGGCAACCACGGCG
AGCCCCCCTGTAATATCAAGTTTCTCTGATGCCATGACCGCCGAGCAGGA
TGGCGATAGCGCTAAAGCCAGCAGCAGGGACAGGACGAAGAACGGGGACC
GCAAACGCCGGGCTGGCAAATCAGGCGCCCTCAACTATGAGGAAGAGGAG
GGGGAGGAAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:471762..472423-

>mRNA_P-littoralis_Contig19.105.1 ID=mRNA_P-littoralis_Contig19.105.1|Name=mRNA_P-littoralis_Contig19.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig19:471762..472423- (Pylaiella littoralis U1_48)
ATGGCGCCGGGAGAATCCACCGGGTGGCCATGCAACAAGTGCACCTTCAT
CAACGAAGATGAGGATGCCACGATCTGCGGAATGTGCCAAGACGGCACAA
GGGCGGCCAGGAAAGCGAAAGGGAGGCTGCGGGGGGCGACGGCAATGTCG
AAGGCAAGGGCAACGGCAACCACGGCGAGCCCCCCTGTAATATCAAGTTT
CTCTGATGCCATGACCGCCGAGCAGGATGGCGATAGCGCTAAAGCCAGCA
GCAGGGACAGGACGAAGAACGGGGACCGCAAACGCCGGGCTGGCAAATCA
GGCGCCCTCAACTATGAGGAAGAGGAGGGGGAGGAAGAG
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