prot_P-littoralis_Contig19.102.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig19.102.2
Unique Nameprot_P-littoralis_Contig19.102.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1147
Homology
BLAST of mRNA_P-littoralis_Contig19.102.2 vs. uniprot
Match: A0A6H5KXN8_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN8_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.630e-47
Identity = 304/641 (47.43%), Postives = 351/641 (54.76%), Query Frame = 0
Query:  528 PRRRTLVERLGL-GGGGSQPHGGSQPSPEAFLSSSQGRGGWTCGQCTLFNRGRAKACEACGRAKASSPALT--RAATHGGPVGRVDGARNA--DSGGFDAVANGGSGVNGXXXXXXXXXXXXXXXXXGDSRCRSSREPRKIKNGRAGDED-VGDRGPGLGKRR------------RQDAGDDEDIEVDDAGAAAESTLAYSPDSADGNGGEGEQQATGRAGAAASGTRGXXXXXXXXXXXXAVQGFVGDDDAVCLEESEEDDWEGEGXXXXXXXXXXXXXAQD-----GDSGVEDAEVVGSQIEEVFLQSRGRPLQQXXXXXXXXXXXXXXXXXXXXXXSSKKRQRPVLPQSGLVLDLTDAVNNESS--DEDAAAAGAAVWGKGRDDGRRVPAPAGAAPNDVEEIDXXXXXXXFDLPGLRGSVAASAGXXXXXSAARQEPPRKFRCFASVREHRDRGTSCVDFASLESAPAGGPSGTKTYAARKTARDRKGKSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRQPFGGAGGAPTASWIPAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNQPRPFNHYRGNDEMVDDSIGGGGFHWEGVGQTSFG 1143
            PR+  ++ RL    G GSQ    S   P +    S  RG W CG CTL NRGRAK CEAC   ++    +T  RAA   G     D A NA  D G  D                            G    R +RE    + G  G ED VG    G GKRR            R++ G+ ED+     G A   ++         +GG GE       G  A   RG    XXXXXXX  + GFVGD D +  +  ++DD  G         XXXXXX +D     GD   E  E+V SQIEE FL+S+     +                        + R+R   P  G VLDLT+ V+N+ S  D D A  G    GKGR       A AGA   D+ +  XXXXXXXF LPGL+GS AA+AG         + PPRKFR F++VREHRDRGTSC+DFA++ +APAGG SGTK+YA RKTARDRK           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +PFGG GG P++SWIPAGVAA        XXXXXXXXXXXXXXXXXXXXX       FNHY+GNDEMVDDSIGGGGFHWEGVGQTSFG
Sbjct:  808 PRQSRVLGRLAWDSGAGSQTSQASTGPPLSSPRGSGSRGEWECGTCTLKNRGRAKVCEACETPRSPPRGMTTRRAAGRKG-----DSADNAWSDGGADDXXXXXXXXXXXSLSGSGRGADDSGGDGDGSRPERGARE----QGGCNGGEDFVG----GAGKRRHGGSEEASSSTGRKETGEIEDVRR--TGRARNGSVGSGKGK---DGGRGEHN-----GGVAGSARGEVGAXXXXXXX-GMGGFVGDLDVLYSDIEDDDDLGGFSAGMGDDDXXXXXXDEDYLDEDGDD-FEQYEMVSSQIEERFLRSQ----PEGGVDTSPNPQGRPQSVEGLSPSPKRSRRRVPAPSPGQVLDLTEIVDNDGSGPDRDTAPRG----GKGR-------AGAGAMVEDISDX-XXXXXXXFSLPGLKGSTAAAAG-------GERAPPRKFRFFSNVREHRDRGTSCIDFAAMAAAPAGGASGTKSYAVRKTARDRK----------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSVRPFGGTGGVPSSSWIPAGVAAGLSSSGSAXXXXXXXXXXXXXXXXXXXXXXXX----FNHYQGNDEMVDDSIGGGGFHWEGVGQTSFG 1386          
BLAST of mRNA_P-littoralis_Contig19.102.2 vs. uniprot
Match: D7FLU0_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU0_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.730e-37
Identity = 190/368 (51.63%), Postives = 217/368 (58.97%), Query Frame = 0
Query:  791 QDGDSGVEDAEVVGSQIEEVFLQSRGRPLQQXXXXXXXXXXXXXXXXXXXXXXSSKKRQRPVLPQSGLVLDLTDAVNNESS--DEDAAAAGAAVWGKGRDDGRRVPAPAGAAPNDVEEIDXXXXXXXFDLPGLRGSVAASAGXXXXXSAARQEPPRKFRCFASVREHRDRGTSCVDFASLESAPAGGPSGTKTYAARKTARD------RKGKSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRQPFGGAGGAPTASWIPAGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG-------NQPRPFNHYRGNDEMVDDSIGGGGFHWEGVGQTSFG 1143
            +DGD   E +E+V SQIEE FL+S+     +            XXXXXXXXXX    R+R   P  G VLDLT+ V+N+ S  D D A  G    GKGR       A AGA   D+ +  XXXXXXXF LPGL+GS A +AG         + PPRKFR F++VREHRDRGTSC+DFA++ +APAGG SGTK+YA RKTARD      ++G  KS                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 GG P++SWIP GVAA                    XXXXXXXXX          Q +PFNHYRGNDEMVDDSIGGGGFHWEGVGQTSFG
Sbjct:  814 EDGDD-FEQSEMVSSQIEERFLRSQ----PEGGEDTSPNPRGRXXXXXXXXXXXXSSRRRVPAPPPGHVLDLTETVDNDDSGPDRDTARRG----GKGR-------AGAGAMVEDISDX-XXXXXXXFSLPGLKGSTAGAAG-------GERAPPRKFRFFSNVREHRDRGTSCIDFAAMAAAPAGGASGTKSYADRKTARDXXXXXXKRGSKKSKAPRARATAAGAAAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------TGGVPSSSWIPTGVAAGLSSRSAGLSSSGSAAGRRAXXXXXXXXXXXXXXXRGRRQQQPFNHYRGNDEMVDDSIGGGGFHWEGVGQTSFG 1141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.102.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXN8_9PHAE2.630e-4747.43RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FLU0_ECTSI1.730e-3751.63RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 565..589
e-value: 6.0E-4
score: 29.1
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 567..586
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 563..592
score: 8.591875
NoneNo IPR availableGENE3D2.30.30.380coord: 561..601
e-value: 3.3E-5
score: 25.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..563
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 648..690
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 815..851
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 587..1146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 987..1008
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 946..962
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..274
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 903..917
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..563
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 761..796
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 564..589

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:466972..471131 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.102.2mRNA_P-littoralis_Contig19.102.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig19 466860..471745 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig19.102.2 ID=prot_P-littoralis_Contig19.102.2|Name=mRNA_P-littoralis_Contig19.102.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1147bp
MCEIGGSCGMSPAGLGVVRRKASDKRGASDAGGSSLVGSTEDGCGSGGGG
GNSGDGEVKKEGPMPAGTLPFATQERKVKNKRSRLSLPTKKRAGNGRDGS
KTSSDPGTPVVTSQQRADTAGLAAKESEQAAETKQESPSTPPAAAVDGDC
RQGLDTDDTAAAVAAAAAAVAALSAGNDCELPGKDVGGAVDGVASAGGGG
DSAMDVDAVGGVASAAAAGSAMDVDADPSHPVDGGLGTAGEAGDDEHKDE
DTDIDERCGTKNPDENRAKTEGPEDLDGNGGTLSPCGGGSEEEVEEDDCG
ELVKEDSASLTVGEGERESVEGGSQEAAPVATESSNGAVAASGDAGTEAT
TGGPAQPQCRALAGCRMTMDVGSSDSDSSDDDGDTARGGAGEGGGGGAVH
LGRAFDEAVTHSSPSPYTTAAAAASPPPRSAPASVAGISEEDADQSAAAL
SPAARTPSPRRRSSRAQGKGTTVAAAAAAASPEDSQDAAAMGLVDTPPPK
KKHLPAGTAASSPSSTSSEVKKVRKKTPRRRTLVERLGLGGGGSQPHGGS
QPSPEAFLSSSQGRGGWTCGQCTLFNRGRAKACEACGRAKASSPALTRAA
THGGPVGRVDGARNADSGGFDAVANGGSGVNGGSSGGGGGGGGGSDDDGG
DSRCRSSREPRKIKNGRAGDEDVGDRGPGLGKRRRQDAGDDEDIEVDDAG
AAAESTLAYSPDSADGNGGEGEQQATGRAGAAASGTRGGRKGAAAATTAA
AVQGFVGDDDAVCLEESEEDDWEGEGGDGDDSDDEDYFDAQDGDSGVEDA
EVVGSQIEEVFLQSRGRPLQQQQQQQRSRVQSMDSSSSSNSVASSKKRQR
PVLPQSGLVLDLTDAVNNESSDEDAAAAGAAVWGKGRDDGRRVPAPAGAA
PNDVEEIDDDDDDDDFDLPGLRGSVAASAGGGSGASAARQEPPRKFRCFA
SVREHRDRGTSCVDFASLESAPAGGPSGTKTYAARKTARDRKGKSKSKRG
KRKSRAAAPRAAPRAPRATPASAGAAGHARGKGGSARGGRGGGRAGSGSF
RSGGRQPFGGAGGAPTASWIPAGVAAAAAAAARSSSSSSAGGGKRGGGGG
GGAGGSGNQPRPFNHYRGNDEMVDDSIGGGGFHWEGVGQTSFGGDH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf