mRNA_P-littoralis_Contig19.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.93.1
Unique NamemRNA_P-littoralis_Contig19.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.93.1 vs. uniprot
Match: D7FLT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLT7_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.760e-60
Identity = 117/182 (64.29%), Postives = 133/182 (73.08%), Query Frame = 1 
Query:  124 LAALMAPRCAHSFAPV----------VGTSRKCSNRRAASMTLPGGINLNRALGTVLVSGALLTGVVGGAGVARADLSISPRCITGEGAQCDDLAEGSELIKTLQARSALSKDRYIAETLDTYNQHNFKGPAEYLRHTGYFKAEGKHMVKHKSGKYEILTNAEYANAEKAGKVKSDNFLGED 639
            LAAL+ P C  SFA +          V TS +C + R   MTLP   +LNRALG VLV GAL+TG +    VARAD+SISPRCITGEGAQC+DLAEG+ELIK+LQA+SA+SKDRY  ETLDTYN HNFK          YFKAE KHMVKH +GKYEILTNAEYA AEKAGKV++D FLGED
Sbjct:    7 LAALVGPSCVESFAVLCTAPSSSTSPVSTSLRCRSTRTM-MTLPTAGDLNRALGAVLVGGALITGAMD---VARADVSISPRCITGEGAQCEDLAEGNELIKSLQAKSAISKDRYFQETLDTYNVHNFKD---------YFKAESKHMVKHNTGKYEILTNAEYAAAEKAGKVRNDVFLGED 175
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BLAST of mRNA_P-littoralis_Contig19.93.1 vs. uniprot
Match: A0A835ZAV3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV3_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.000e-9
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  340 CITGEGAQCDDLAEGSELIKTLQARSALSKDRYIAETLDTYNQHNFKGPAEYLRHTGYFKAEGKHMVKHKSGKYEILTNAEYANAEKAGKVKSDNFL 630
            C  G G  C   AEGS+LI+ LQ RSA  +     + L+TYN+HNF           YFK   K MV+    +Y +++  EYA AEKAG V  + ++
Sbjct:   75 CEVGVGDGCAQAAEGSDLIRKLQQRSAERRAEREQQMLETYNEHNF---------ADYFKTLNKRMVRKGPNQYVLMSETEYAAAEKAGLVYDNKYI 162
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BLAST of mRNA_P-littoralis_Contig19.93.1 vs. uniprot
Match: A0A1Z5KK89_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK89_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 7.830e-8
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  262 LVSGALLTGVVGGAGVARADLSISPRCITGEGAQCDDLAEGSELIKTLQARSALSKDRYIAETLDTYNQHNFKGPAEYLRHTGYFKAEGKHMVKHKSGKYEILTNAEYANAEKAGKV 612
            L+  AL+   V  +  A A +S S  C  G G  C DL+EG+ELI++LQ +SA++++RY  E LD Y   N+           +F   GK +VK   G +  L ++E    ++ GKV
Sbjct:   26 LLQQALVGAFVASSSPAEAVIS-SKYCSAGVGEGCGDLSEGNELIRSLQEKSAINRERYQQEALDAYYMKNYPD---------FFGVVGKTLVKKPDGTFVALADSEVEKLKQEGKV 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLT7_ECTSI3.760e-6064.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAV3_9STRA3.000e-939.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KK89_FISSO7.830e-835.04Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:437988..443607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLT7
Model size1379
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue3.68e-64
EggNOG OGs2CACH@1|root,2SH2H@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001300.1
Cds size540
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.93.1prot_P-littoralis_Contig19.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 438090..442870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.0294404-UTR-P-littoralis_Contig19:437987..4380891680789910.0294404-UTR-P-littoralis_Contig19:437987..438089Pylaiella littoralis U1_48UTRP-littoralis_Contig19 437988..438089 +
1680789910.0799017-UTR-P-littoralis_Contig19:442870..4436071680789910.0799017-UTR-P-littoralis_Contig19:442870..443607Pylaiella littoralis U1_48UTRP-littoralis_Contig19 442871..443607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789910.0409334-CDS-P-littoralis_Contig19:438089..4383271680789910.0409334-CDS-P-littoralis_Contig19:438089..438327Pylaiella littoralis U1_48CDSP-littoralis_Contig19 438090..438327 +
1680789910.0501912-CDS-P-littoralis_Contig19:439913..4400531680789910.0501912-CDS-P-littoralis_Contig19:439913..440053Pylaiella littoralis U1_48CDSP-littoralis_Contig19 439914..440053 +
1680789910.0592248-CDS-P-littoralis_Contig19:440936..4410051680789910.0592248-CDS-P-littoralis_Contig19:440936..441005Pylaiella littoralis U1_48CDSP-littoralis_Contig19 440937..441005 +
1680789910.0707092-CDS-P-littoralis_Contig19:442777..4428701680789910.0707092-CDS-P-littoralis_Contig19:442777..442870Pylaiella littoralis U1_48CDSP-littoralis_Contig19 442778..442870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.93.1

>prot_P-littoralis_Contig19.93.1 ID=prot_P-littoralis_Contig19.93.1|Name=mRNA_P-littoralis_Contig19.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MRLIFCFLAALMAPRCAHSFAPVVGTSRKCSNRRAASMTLPGGINLNRAL
GTVLVSGALLTGVVGGAGVARADLSISPRCITGEGAQCDDLAEGSELIKT
LQARSALSKDRYIAETLDTYNQHNFKGPAEYLRHTGYFKAEGKHMVKHKS
GKYEILTNAEYANAEKAGKVKSDNFLGED*
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mRNA from alignment at P-littoralis_Contig19:437988..443607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.93.1 ID=mRNA_P-littoralis_Contig19.93.1|Name=mRNA_P-littoralis_Contig19.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5620bp|location=Sequence derived from alignment at P-littoralis_Contig19:437988..443607+ (Pylaiella littoralis U1_48)
AAAAACGCTTGCTGCTGGCTGTTGTGCTGTTGTATGCATCTGTGGCACTT
CACTCGCTGCACCTTGCAACGTAGACCAGGAATCAAACTGACAAAATAAA
CCATGCGTCTCATATTTTGTTTCCTTGCTGCGCTGATGGCACCACGCTGT
GCGCACAGCTTCGCACCTGTGGTCGGTACTTCTCGAAAATGTTCGAATAG
ACGAGCTGCGTCGATGACGTTGCCAGGAGGGATCAACTTGAATCGGGCCT
TGGGAACTGTCCTTGTGAGCGGCGCTCTGCTGACGGGGGTCGTTGGTGGT
GCTGGCGTTGCGAGAGCAGACTTATCCATCAGTCCAAGATGTGAGTCCGG
GCGTTTTCCTTGTTGTGTTTCATATGATAGCCGTCTCTTGAGAAATTGAC
CGCCGAACACGCGTGACTCATGAAATCAGATCTTCGTCTCCTGGCTCATG
ATCCACCTGCAGCGTATGCGATCATATCATATGAGTTGTGTCTCAGCTTT
CGCCCTCTCCCAGGATCGTATGCACACAGCGCTCTGCGTGTCTGACCGTT
TGATGGTGACACTCACCCATCGTCTGCCTACACATTTCACCTGTCGCATT
CTTCCCTCTACTTACGAGAAGGACAGGAGATCGATGTCAACGCTGTACTG
CCGGCTACAGCAAAGAAAAGGGGCTCGATTCAAATTACGCCGCCTCCTGA
TATCCTGATATTTCTGTTCGGCTTAAAATGACGGCGACACGGCAGTACCA
CAGCTGTGCCACAGCAGCTGTGCCGTATTCTCTGTTGTAATGGATACCGC
TGTGCCGATTCTGCGCAAGGTACACGCAATCCCGGTCGATTTGCCGAGCT
GAATTACTCCGCTACAACGAAGAGTGCCAATTCGCCAATTCCAAACAGTA
CGGTTGCGGAGAAAAAAACTGAAGGCGCTAGAGCTGTCATATCATACGTA
TGTACGATACTTCAGATGAAATACATTGGTCCTAAAGCGGACCATCCTTC
ATTTTTGGCATCGACACTGGTGCCGTCTCTTCAGCAGTATACTGCTGTAG
CTTTCAGTAGAAACATACAAGTACAGTAGTAGTATTATGATAACAATGCC
GAGCACCGCAGAAGGAGAGTGTAGAAAAAAAATCTTGTTTTTACAGTATC
TACAGTCAGTACCGGCCCGCTCATAAGAAACACCTTTTATAAGAAAGCGA
GGCGGGAATTTTTCAAAAATTAAGAAATTTGGCGTAAGAAAATGGGCTCG
GCAGCGGGCGCCACACTAAACCCTGTACGATGGTCAAGAAATAGCCATCC
TTGGTGCTGGTGACACAACAAGAAGCCAAGGCTGAGGCTGATTTCCAGTT
TCTTATGAGCGGGCCGGTACTGTATGCTGTTTGACCTGGCAGAGTTGTGC
AGGGGAGTTACTTCATGATGCGATTCATATCTACAACTTTTTTTATTCCC
GGCCGACATATCATATGAAACCCTCTCCGCAAAGAACTCTCAACACACCC
CACGGAGTCCCATCTTGGGTGGGCGCGCTTTCTTTGATGTTGTTTGAGTT
TTCTCAAAAAAAAAAGGGAGGAAATTATACCTGTGTGTTGGACACCCCTG
CTTGTACGCCCAACTTTCATCGAAAGGTGTAGACTGACGTCCAGAACACC
GGTACAACTATATAGATGAGACGAACACATACATACAAACACTATTCTCT
TTTGACGTAGCTTGCTGTCGAATCGTGATCATGCCGAGCGTGGAGAAAGA
CATAAAAACGGCCAAGGAAGAGACAGACGGTAGTTTCACCGGCCGCGGTC
ACCTTCGAGCATCCTGGACAAACATTTCTTGGGAGACAAGGTCGGCCCGG
CACCACCACACTAAAATGTCACTGCTGTTTATATGTACTCTGCCGCTGGT
GAACATTCTCGCCTTCTTCCTACAAGGTATAACTGGTGAGGGTGCGCAGT
GCGACGACCTGGCGGAAGGGAGCGAGCTGATCAAGACGCTTCAAGCGCGG
TCGGCACTTTCCAAGGACCGTTACATCGCGGAGACCCTCGACACGTACAA
CCAACACAACTTCAAAGGTAAGTGTGACACTGTTTTGGTAGGTCTCGATT
TTGTCTTGTTTGATAGCTTTGTTGATTAAAGTACTACTCGGTATTACTGT
ATATGCTCGGGAGGGAGTTGTTGTGCGCCCCCGCGTGTGAAACAAATCTT
CTCCCGGCGCAGAATACCGCGACCGCCCCTGGGACTCACCGTCTCAACAT
CTATCCAGTGCATGACCTGTCTCTCACACGCGTTTCTGGTATTCAAGAAC
CTTATCGTGCTTTAACCCGGATGTCCACTTTGCATCCTTTCGGGGGACGC
CTCTTGGAGGTGTCGTTGTTACAATCTTGATGCGTCAACTCATTTACCAA
GATACTTGCGGTGCCGCTACACGGCGCAATATAAGTACGTATTCTACGCG
AGGGAGATTTTTATCTCATGCATTCGGGTCCAAGACTCGCTCCGCCCTTG
TCGTTCATTGCTAGATATGATCCTACAGCTGTAAATGTTCCATAGGGTGG
CACTGGTACTCTCGGCGGTCGTGTCAAGCCTTGTTGAGACGATGAAATGG
CTCCGATTCACGTACCACGCCGGCGAATCATCGCGCATCGCGTGCGTGCC
TGCTTGCCCGAGGATCACCTCGTATCATCACGTGCTGCGTGCGTATGATA
GCATGTGCGTTGTCGTTGCACGTTGTGATCCACACCAGACAGCCCCGGCG
CTGTCACGGTGTGCTGAGTGGACCTTGAATGGGCACGCTTTTTAATCGTT
CCTCCCGGTGGGCTCTGTGGACAAGAGTCAAGAGTTTTCAACCAAGACTT
TGGAGGCAGCTGCGGTCGTCCGTGATGACGATCCTAACTGATCCCCACCC
CCCTGCCCGACCCTCTGCTGTCCCATCCGTGTCTGTTCTTCCGTCTCTCG
GCCCCGCCGAGTACTTGCGACACACAGGCTATTTCAAAGCCGAGGGCAAG
CACATGGTAAAGCACAAAGTGAGTATGGGCAGTGCCTGTCGGACCTTGTA
TTATAGTACCTGGAGAAAGCGTTTCTCGTCGAGGTCGTCGTTAAACAATC
GCCGTGCTGTTTCATAACCAGCGATTGGCTGCCTCGTTTCAACTCGATAT
TTTGCCAAATGGTGGCCATTACTTCTGGAGAGTTCAACATTTCTGGGGCA
TTTTTTTAGCACATTCGCCAAAAAGCGGTATACCGCCTGGTTTCCGCGCC
ACAAAGCGGTACACCAAAATACACCTAGGCATTTGAGGCCCGTTCGCGTC
GCTGATTGGCTGATTAAGCCTCGTAAGGCTTTTTGGCACCAGCAGTCAGC
GGTACATCACATCTGGGCTTCTCAGGTCGGCTGTCACCGCTTTTTGGCGC
GACCCGTACCGCTTTCTGGCGGGATATTTCTCAGGCCATTCGACCAACAG
CCTTTGACACTTCCAAGTCACGCATCAACCTAGGGAGCCACGTTACGCAG
TTACACAACCCCCGGCATTTTGTCGGTGAAGAACCTCTCCGCGCATTTTC
TCTGCACCCGACCCCTTTGGGACCTTACAGCTTGCTGCAACTGATGCGTG
CCTCTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTTAATCCCGTTTATTCT
GGGCAGCAGTCTACACCTTTCGGTATGAAGTGGGTGCACTAGCCGGGGTC
ACACAGAAGGAAGATCAAACACGAGCTTTATGTTTTTGCGGTGCTCTGCA
AGAAAGCTGGCGGGTAGACAGAACAACCACCCACTGCTGCTGCTGCTGTA
AAACCATAACATAAAGTAGTAGGCCATGTGAGAGCGCGACTCACACCCCC
GGCACAAATGAATACACCGTGACTGCCGTCTGCCGTGTGAGGCCCCGAAA
AATAACCGTTATGATTTTTGGCAACAAACATGTTGCATATCCGGGTTTAC
CAATACGCAGCGTAAGGTATATCATCCATTTACGTATATATCCGAGTCTG
CCAAATCAGGTGCATGTCATCGTGCGTGTATGCGTGTGTGTTTGTTTGCG
GGTGCGCGAGTTTTGCCCGCGGTCGGTCTTTTGTTCTGGTAAGGGGCAGC
ACCGTGTGGGTGGGTGTGTTAGTGCCGGGGGTGTGATTTGCGTTCTCACA
CATGGGTCCACTATCAAACAACACTGCTCTCTTGTTCTGTTTTTTTTACA
GCAGCACCAGCAGCAGCAGTGGTGATTTTTCTGGCCTTCTTGCCAGCTTA
GAGCACTGCAGAAGCACGCATCAGCTTGCAGCAAGCTGTAAGGTTCCGAA
GGGGTTGGGTGTAGAGAAAACGTGCGGGGAACGTGCCGAGAGGTTCTTCT
TCACCAACAAAGGGCCGAGGGGGGGCTCCGAAATTAGTTAGGTGACGTGG
CTTCCTAGGTTGATGCGTGACTTGGAAGTGTCAAAGGCTGTTGCGCCTAT
GGTCTGGGAAATATCCCGCCAGAAAGCGGTTCGGGTCGCGCCAAAAAGCG
GTGACAGCCGACCTGAGAAGCCCAGATGTGATGTACCGCCGACTGCTGGT
GCCAAAAAGCCTTTCGAGGCTTAACCAGCCAATCAGCGACGCGAACGGGG
CTCAAATGCCTAGGTGTATTTTGGTGTACCGCTTTGTAGCGCGGAAACCA
GGCGGTATACCGCTTTTTGGCGTCTGCCTTTTTTTTATTACGGACATATC
CTGGCCTTTACATGAACGAAAAATATGTGCAAGTCTTTGCGTGCCGAAAA
ACAGAACGCCCGCGTATTTTTGAATGGTGCGTCTTGACAGAGCGGGAAGT
ACGAGATCCTGACGAACGCTGAGTACGCGAACGCGGAGAAGGCGGGCAAG
GTCAAGAGCGACAACTTCCTCGGGGAGGACTGATCGTATGCCAGCTTAAC
TTGAGGCTTTCATCAAGGACTTTTCCAAGGAACACGTGGACTGCTGTTAA
ATTCGTCTACCATTCTCTGTGGCTGTGTCTTATGACTGAAGCACGAAAAA
AACTGTGTTGTGTTTTGATGTTGCGGTTCTATGCCGAGAATTATGTTTTT
GCGCGGGAAAGACCGAAGAAACGCCCTGCCCTGGTGCCTCGTGAAGTGCA
CCGATGCGCCAAATATTTTGTTTCTCTCATCTCGATTCTTATCTTTTAGC
GTGGAGGACCGTGCGTCTATGATGGTCATGTGATCAATGCTCCGACGCCG
AACACTTGTTATTTGTATCTATTTCCAAAAATATTTTTTCTTCGCAAGTG
TTTTTCTTTCCGACGTGAAGGACCATCTAGTGAGTGTTGTGTCATGCGCT
GTTTTTTATTTCGTTCGGAAAGAATCTGCACGCATACGGGTGGCCCGAGG
CGGTAAAACCTTCCCATACTCAACAAATAAACACAGAACTCAAATCCTAC
ACGAGAAAACCGTTGTGCTCTGGGTGGCTACTGTGCGGCATGACGAGGCA
AAGAGCGTGCCATTCCTTGAGGATTGGGCCACAACATGCCACAGCAATTG
GGAGGCATTGCTGGGCAGGAAATATTTTGCCTTGGTGCATCGGGATCGAA
ACGAGGCATTGGAGCAAAATCACGTTTTATTAAAACAAAAAAACGGCGTT
TCACGGAAGAATATTTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:437988..443607+

>mRNA_P-littoralis_Contig19.93.1 ID=mRNA_P-littoralis_Contig19.93.1|Name=mRNA_P-littoralis_Contig19.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig19:437988..443607+ (Pylaiella littoralis U1_48)
ATGCGTCTCATATTTTGTTTCCTTGCTGCGCTGATGGCACCACGCTGTGC
GCACAGCTTCGCACCTGTGGTCGGTACTTCTCGAAAATGTTCGAATAGAC
GAGCTGCGTCGATGACGTTGCCAGGAGGGATCAACTTGAATCGGGCCTTG
GGAACTGTCCTTGTGAGCGGCGCTCTGCTGACGGGGGTCGTTGGTGGTGC
TGGCGTTGCGAGAGCAGACTTATCCATCAGTCCAAGATGTATAACTGGTG
AGGGTGCGCAGTGCGACGACCTGGCGGAAGGGAGCGAGCTGATCAAGACG
CTTCAAGCGCGGTCGGCACTTTCCAAGGACCGTTACATCGCGGAGACCCT
CGACACGTACAACCAACACAACTTCAAAGGCCCCGCCGAGTACTTGCGAC
ACACAGGCTATTTCAAAGCCGAGGGCAAGCACATGGTAAAGCACAAAAGC
GGGAAGTACGAGATCCTGACGAACGCTGAGTACGCGAACGCGGAGAAGGC
GGGCAAGGTCAAGAGCGACAACTTCCTCGGGGAGGACTGA
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