mRNA_P-littoralis_Contig19.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.88.1
Unique NamemRNA_P-littoralis_Contig19.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.88.1 vs. uniprot
Match: D7FLT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT5_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.560e-42
Identity = 101/245 (41.22%), Postives = 142/245 (57.96%), Query Frame = 2 
Query:    5 SWIHADSPPQRQQLENSFDPATFVNVGYWTIALVCLRLGLSWPWALVRCTKYFEVYGTYLSSQQMQLTANSSSQTPATATDTQADAT-----PSAPPVPXXAGGSSRGRRIFLGMAAVVVVLLGTSVHFHSQNRALEAENFTLRARVTQLENAS----TKDTGSSQIPATSCGGNQLIDTCWLKMGWGDCTENVMEDYSMKPFEDAFRVAWDSTAEVVGIVSDTVKSDLRQVCDAIHSLGRFIFE 712
            SW+  D+    QQL++SF P TFVNVG +                            +  SS++ + T+ +SSQTP  AT            PSAP     +GGS  GR I LG+ AVVV+LLGT+ + ++Q+RA +AE  +LR +V +LE A+    +K T S+   +T+C G+QLIDTCW K+GWGDC    +ED  +KP EDAFR A DS + V+G V++T  SD+ QVCDA+ + G ++FE
Sbjct:   20 SWVPTDA--SEQQLDDSFHPDTFVNVGNFL--------------------------SSQESSERARSTSETSSQTPPPATIASVSTVTHVVDPSAPLTSLLSGGSRAGR-IVLGLLAVVVMLLGTNAYSYNQSRAWKAETSSLREKVGKLEAAARTSASKPTWSTSTSSTTCPGSQLIDTCWFKVGWGDCANEALED-PVKPIEDAFRFALDSASGVIGAVTETFASDMSQVCDAVRAFGSYLFE 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT5_ECTSI2.560e-4241.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:425921..432427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1826
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001320.1
Cds size522
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.88.1prot_P-littoralis_Contig19.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 428436..431319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789909.855636-UTR-P-littoralis_Contig19:425920..4260041680789909.855636-UTR-P-littoralis_Contig19:425920..426004Pylaiella littoralis U1_48UTRP-littoralis_Contig19 425921..426004 +
1680789909.8650122-UTR-P-littoralis_Contig19:426843..4269331680789909.8650122-UTR-P-littoralis_Contig19:426843..426933Pylaiella littoralis U1_48UTRP-littoralis_Contig19 426844..426933 +
1680789909.874467-UTR-P-littoralis_Contig19:428413..4284351680789909.874467-UTR-P-littoralis_Contig19:428413..428435Pylaiella littoralis U1_48UTRP-littoralis_Contig19 428414..428435 +
1680789909.9391031-UTR-P-littoralis_Contig19:431319..4324271680789909.9391031-UTR-P-littoralis_Contig19:431319..432427Pylaiella littoralis U1_48UTRP-littoralis_Contig19 431320..432427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789909.8864508-CDS-P-littoralis_Contig19:428435..4286391680789909.8864508-CDS-P-littoralis_Contig19:428435..428639Pylaiella littoralis U1_48CDSP-littoralis_Contig19 428436..428639 +
1680789909.898541-CDS-P-littoralis_Contig19:429921..4300501680789909.898541-CDS-P-littoralis_Contig19:429921..430050Pylaiella littoralis U1_48CDSP-littoralis_Contig19 429922..430050 +
1680789909.9142208-CDS-P-littoralis_Contig19:430747..4308881680789909.9142208-CDS-P-littoralis_Contig19:430747..430888Pylaiella littoralis U1_48CDSP-littoralis_Contig19 430748..430888 +
1680789909.9274297-CDS-P-littoralis_Contig19:431271..4313191680789909.9274297-CDS-P-littoralis_Contig19:431271..431319Pylaiella littoralis U1_48CDSP-littoralis_Contig19 431272..431319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.88.1

>prot_P-littoralis_Contig19.88.1 ID=prot_P-littoralis_Contig19.88.1|Name=mRNA_P-littoralis_Contig19.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MQLTANSSSQTPATATDTQADATPSAPPVPPPAGGSSRGRRIFLGMAAVV
VVLLGTSVHFHSQNRALEAENFTLRARVTQLENASTKDTGSSQIPATSCG
GNQLIDTCWLKMGWGDCTENVMEDYSMKPFEDAFRVAWDSTAEVVGIVSD
TVKSDLRQVCDAIHSLGRFIFEL*
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mRNA from alignment at P-littoralis_Contig19:425921..432427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.88.1 ID=mRNA_P-littoralis_Contig19.88.1|Name=mRNA_P-littoralis_Contig19.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6507bp|location=Sequence derived from alignment at P-littoralis_Contig19:425921..432427+ (Pylaiella littoralis U1_48)
AGGCAGCTGGATCCACGCAGATTCCCCGCCACAGCGGCAGCAGCTCGAGA
ATAGCTTCGATCCGGCCACCTTCGTCAATGTTGGGTGAGAGATGAGAGAA
GAGCGGGTTATCGTATACTCCTCGATCTATTCCTTGCTTCATGTGCTTCA
CGTCGTGGATACACGTGGACCCATCCCTGCTGTAGCCGCTCCGTGGAGCA
TGGCCACCATCCCGTGTTGCGGTGGTGCTCCTCTCTCGCGAGCGGTCGTT
CTTCTCGTGTGGTGCTTGTTGGTGCGTTTGTCCTGACTTCAACCTTAGTG
CGCGAGCGTCGGCATTTTTGTATTCGACCACAGCAGTCTTAATGTTCGTG
CTGTCGGTCGATCCCGCCTCTTCGTCCTCTCATGACACGTGGGGGCGCGA
CGGACGACACGTGGAATGTACTATTTGCGTATATACAATACAGCAGATCG
GTCGGGTGTCCCACGAGAGACGGTATGGTGGCTTTTGTTATTATTTTTTC
GGGGAATGTTCTTGATGTTTTGCTTGACTTTCGTACGGTATCATACAGGA
GCAGTACACGCACGCGATACCACATACTTCGAAGTTTGCATTCTTTGATA
AACAAGTTTGAAGTGCTTACTCAAGATTCCGCGCCTTGCACTAGCGCGCC
TAATTAAGAACGATTCTTCCAAGATGTCTCGAGTGTCGAGTCGCACAGCA
TGTAGTTCGTGCAGCAATTCGTGCTTTCATGTTTGCTGGAATGTGAGTTC
GCGTTGCGTCAGGTGACCTAACTACAGGATAAGGTCAAATTCTGCCGAAG
ATTCAGATTTTGAACCACCGGTATATACTCCTGTTTGTGCACGAGTGCAC
TCCCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTCTTTTTGTTTTTTTGG
TCTTTCGTCTGTTGATCATATAGTTACTGGACCATCGCCCTGGTTTGCCT
TCGCCTTGGTCTGTCATGGCCCTGGGCCCTGGTTCGATGTACGAAGTACT
TCGAAGTATACGGGTATGGTTGAGGTTTGTCTTGGTCATTCTTTGTTTGT
CGTACTGTTTCCAATTTTTGTTTTTTCTTTCGAACCTGTTATTTTTTTTT
TCTGTATTTTGTTTGGTAGTTTGGCCACCACAGATGGTACCCCAACGGTA
CCATACCGGTATCTGATTTGACTGTGGGTGATCATAGTCCATTTATTTTA
TTTATTTATTTTCCTCCTAGCACGATATGTGCCTGTGACCACGGACTAGA
CTGCGGCGGTAGTGAGCTAAGGTGGGAATCAACAACAACAACTCTGTACT
CTCAGCACATCTACTAACTACTCTGTCTCGGAGCCTTCCATAATTTTACC
GGTATTTATCAAACATACATACTGGTACGAAGTATGATCCCAAGGTCATA
CAACGAGTACTTCGTATATATTTCGAACTACTTACAGCAGTAGTATACGT
TATTTTCTAAGTTGACGGCTTCCTCGGAGCTCTTCCCTCCAGCTTGAAGA
CAGACACCGACACATTTCTAACGCCCACACACCCACCCCCAATATCTGTC
TCAGACATCGAGAGTGGTTCATATGGGTGGTGTGCCACGAGTAAGTTAGG
GAAGGTGGGCTACACATACAGCAGTTGGCGCCCGCCGTCGGTGAGCGGAA
AAAAACGGGGAAAACACAGTAGCAGTATATTCATTTCATTTTGCATACTA
CTACTGCTGCATATTTTCGTCGAAAAGGGAGGTGATGTTTTTTTTTTTTT
TTCCTCACCGCATCCGTCTACTCGAATCTGTACACCGCCGTTTCTTCCTC
CTCTACGTTCTACGGCAGTATAACCCTGCGGTCTGACGTACAGCAGTAGT
ATTTGCCCACCTACTGAATACCAGTAGATGGAAAAAGTGTACTTTTTTTC
GTTTTCCTCCTACAGGCATAGCGGTGAGCTGATATGAACAACAACAACAA
CAACAACAACAACAACAACGCAACACACACGCGCAGCACACACGGAGGTA
CTTCGAAGGTACTTGATGGTGTGTCCTGATGTGCGTTGTGGCGCCAACCC
CCTATTTTTCAACACCGGTTTGTCTATGTCGAGCCGGGTCATACCCAGAA
GGATAGTCACAATAGTACCTCAGGAAAATTGACGAAGAAATAGCTCTCTA
CAGAAACAACAGTGGGCTCCACTTTTCAATCCTTTACAAAAGGGTACGCC
CGACGTTGGAAACACAAGCGAAGAATGAAAAATGGAGCCTCGACCATATT
GTGGCGATTCCCATCTGCGGGCGCCCAACTACTACATGCTGTAGGTGTAC
GTTCACAGCAGGATTAAAAACGAACCACGGCCCGTTCATCCTCCCTCACC
TTCTTCTTATTTTCCTTCTCCTTTGTCAATATCTGCAGCAGCCGTTTCTG
GGCACTACATCACACGCGCGCACACACGCACGATACACACGCATACTCAC
CGCGAGTGCGTGTCGTCCGGACCCTCTCTCCTTCCCCCAACAGGACCTAC
CTCAGCTCCCAACAGATGCAGCTGACCGCCAACAGCTCCAGTCAGACCCC
CGCCACTGCTACCGATACCCAAGCGGATGCGACTCCATCGGCTCCGCCGG
TTCCTCCTCCGGCTGGCGGCTCTTCCCGCGGCCGCCGCATCTTTCTCGGC
ATGGCGGCAGTCGTCGTGGTGCTCTTGGGGACGAGCGTCCACTTTCACAG
CCAGAACCGTGCTTTGGAGGTGGGTCTAGAATGTTGCCTGTAGTACGAAG
TATATGTACTTCCGAGTGAATATTCTGGAGGGTTCACACGTGTCCGGGAG
AGGGGGGGGGGGGGGTCATAGCGAACATATACACTGGCAGCAATGTCGGT
ACAGATCGTCTTGGCTCTTTCTTTCTTGGCATCAGCACGCGGCGGCGGCA
GCCATCACCAGAGAAATGTTTGCTGGCTGTGGCTGGCACACACCGTTGAA
ATCGTAGCGTCTCGTGTGCCATCAGGAACGCCCTAGTGTATTTTTATCGT
ATCCGACCTGACTGCTGTGGGCCGTATGAATGCTACTGCTTATTCTCAGC
CACGTTAAGGCCCGGTGGCCCGCGACCCGGACGTCAAGGCTTCTTGGGGG
AGCTCAATCGTAATACATGGCCTTACGCATCCCCTGCTTGTTCGTTAGAT
GAGCTTATCCACTATGGTCTGTTATTTGTTTAACCTTTCACGTTTTTCCG
AGTGGATAAGACCATCTAACGAACAGCCACAAGCGGGGTAAGAGGGGCGA
CGCGCCGTGGAAAAAATGAAGTACTTCGAAGTATATATACTGCTGTACAG
CTGCTTCAGATGGGTTCATTCGATGTCGCTCTGGAGTTACCTGGACGTAC
GCACGTGTATACGTGAGAGTACATACACACTGCTGCCGTACGTCTGAAAC
ACGTCGGGCTCGACCATGCCCGCAACTCTTTTTGAAAAAAACGATCGCGG
CGGAGGCAAGGCGTCGCGTCCTGCGCCGGCGGCTGGCGACATGTTGACCA
TTCCACTGGACTATAGCTATACCGCACACAAAATAGCAAACAAATGCCGA
ATATTATGAAGATCTCGGCAACGGACGAAACAACGCGCGCACGAACGACC
TCTGTACTAGACAATAGCGATAATACACACGAAATGGGGAAACAAAGGCC
GAATATTGTAAAGATGTCGGCAAAAGATGAAATAACGCGCGCACGGACAC
TCGTGGGTTGGTTGGTGCCGCATGTACCCTTCCACGCTGCGTGGGCGTAT
GCTGTCTTTTTCTGTGCGCACAAATTCATGGTATGTTCCGTCACTACCCA
CGTCTGTCCGCCATTTGAGTGTTTCATTTCGTGTACTCAGTTTGAGTGGT
TTGAGTTGCTTTGTATCTCTCCGGCGGATGAGATCGCGTCCCCTTCCTCT
TGTCTTGAGTTGCAAAACCTTGTACTTTTTTGGCTCAGGTGAGGAAGGTA
ATTAAATCGGTGGTTGGTTGACTGTCGAACTGCTGCACACGCTGTTCACA
GGCCGAGAATTTCACGTTGCGGGCGAGGGTCACCCAGCTCGAAAACGCCA
GTACCAAGGACACCGGGTCATCGCAAATACCCGCGACCAGCTGCGGCGGT
AACCAGCTCATCGACACCTGCTGGTTAAAGGTAGATGCTGTCGTGCTCGC
ACAGGTGCAGGCCGACGTCGGTCGTGCTGTATGGTTGGAGTCTCGCACAT
TACATACCGTCAAGTTCTACCACGAAGTAATACCACCAAGTGCGTGCCAC
CTTTCGGACGGAGTAACGGCCTGATTCCACGTATCGCTTTCACGGATAAC
TATCTCCTTGTTGTATTGTGTTATGTTCCGGTTTCCCGCCTGGGCGAAGT
GATGCGGCCGTGTGCCACAACATCACAAACTAAGAAGCCGTTTTCTGCCG
CAGTTTATTCCAGCTTGGAGGCATTTCCGCTTATGTTTCGTATATCTCGT
TCCCCGCCCTCGACGAACATTTTTTCCGCTAAGAGGTTTCAGACCGCTCA
CACGCTTTGTCCATTTTTTTCCTCCGGACCTTTTTGCATTTTTTAAGTTG
CACTAGGTCCCGGCTTCCCGAAATGTATTCGTATGTGGCCGCTCTACCTC
CTGCCCGCTGTACCGCGTTGGCCCGATTTCCGCCAAGCTTCGTTCAGTCC
ACGGTTTCCTTTTCCACATCGACGTTGCTGTACGAGAAGGGAATTTGGCT
TCGTGAAATGTGCTATTTTCCTCTTCGGCGGTGGCGCCAGCGGCGAATGA
TTTAAAACGCCTTCGTATTCTCTTTGTTTCTTTTTGACACTTCGTGTTGA
ATTGTTTCCCCGGTGCTGCTGCAAAAGATGGGGTGGGGGGACTGCACGGA
AAACGTGATGGAGGATTACTCTATGAAGCCGTTCGAGGACGCCTTTCGCG
TCGCTTGGGACTCCACTGCCGAGGTCGTGGGGATCGTATCCGACACCGTC
AAGAGCGACCTACGACAGGTAGGTCGTACATACCGTTGTACGGAACCCCC
CCGCTGACGGGAGAGAGTAACTCCGCCCTGGATAACCCCATCGGCCGACA
CTCATTCCTCCTGCTTCGGGTGTTTTTTTTTTCTATGGGGCGACGACTAG
AGGTGCTGCCGTCCCTTTGATCTGGCGAAACTTGCGTGGAGTTTCACGTG
AAACAATTTTTCCGACCATACAAGTAGACGTTTGGTGTCTCATTTGTTTG
TCACGCTCTCCCGTTGTGGTGGTACAAGCAAGCGATAAATGATGTGGCTG
CTCTAGTGGTGGCAGTTGTGCTACCGGGCGCGAGCTTACGTCTTCTTCGC
CTCCCCCCCCTTGTGCGTGCGTACTTGCCCTTCTGCCGTGCCCCCTCGAA
GGTGTGCGACGCGATCCACTCGTTGGGTAGATTCATCTTCGAGCTTTGAT
GGGTGACACGGCGACCCTCCTTTGTTCGGATGTTCGGCCGGCTGCATGAC
GTGGACAGCGTGATGGACGTGCTTCAAGGCGCGTCGTCGACGCCATGATA
TGTATGTAGCACGGGCACCGAGAAGCCGTAATTTTTCTCAACCGGGGCCC
CGTTTTGTTGTTGCTGTGCTCGCTCAGAGGGTACAAGTAAGGTAGAACTT
GGTTGTTTCCATCCAGCCACGCTCCTTCCCTACAGGGAGCCGCGTTGTTC
TGTCTTGAAAGTATCTTGAGTGGTAGTGGCGATGGCGGTGACGGTGTTTG
TGGCAGCGTTTGTATTGGGATGTGGCACCGCGGTACCATTTGCTCCCGGA
GCGTCTCTGCACAAGCATTGGCTGTGTACATTTTTCGTCGATACACCCGA
GTTTCTCACGTTGTGTCTTCGGTCGTCTTGAATCCCTCTGCACTGACCAA
CGCGTGCGTTGTAGTTGTTCCGGAGGAAGCAGAAACAAGCTGCACCTTTG
CGACGCAGTCGGATTTGCGTTATCCAACCAAGCTTCGTGGGGTGTGTGGA
TCCACCCGTTTTTTTTTTTTTACGTTGTGTCGTCGGTTGTTGTGAAACCC
TTGCACCGACCAACGCCGCGCGTTGTAGCTTTTCGGAGGAAGCAGAAACG
AGCTGCACCTTGGCGATGTCGTATTTTTTTCATTTAAACCACGCTTTGTG
GGGTGCGTGGATACTCGGACGGAATCGCCGTCGTGCCTTTTAAGCGCACC
GTGCACACGACACACCTGGTTGTTGAAAAATCTTTTATCGTTGGTTTTTT
GCGCCGTCTTCGGAGTCTGTACGTGCGTGCGAGTGTAAAAATATCCGAAG
CAGTGTAGCTACCTGGTAGACGGGTAGACGGGTTTTTACCCGTACTCGGT
TTTGGCTGAGTGACTTCTGGGCTGACGACAGGAGTGCAGCGCTGAGCGGG
TGAACTCGCGCACCACAGTGTAGAGAGTGTAGAGACCAATAACCGACTTG
CTGTTGTGTTGAAGCATACCGAATACTGGTGAAAATTTTTGAGGGAAGAC
TATTTTTTTTCGGGGAGGGGGTGGGGGGGGGGGAGTAAAGGAGAACGGTA
CAGGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:425921..432427+

>mRNA_P-littoralis_Contig19.88.1 ID=mRNA_P-littoralis_Contig19.88.1|Name=mRNA_P-littoralis_Contig19.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig19:425921..432427+ (Pylaiella littoralis U1_48)
ATGCAGCTGACCGCCAACAGCTCCAGTCAGACCCCCGCCACTGCTACCGA
TACCCAAGCGGATGCGACTCCATCGGCTCCGCCGGTTCCTCCTCCGGCTG
GCGGCTCTTCCCGCGGCCGCCGCATCTTTCTCGGCATGGCGGCAGTCGTC
GTGGTGCTCTTGGGGACGAGCGTCCACTTTCACAGCCAGAACCGTGCTTT
GGAGGCCGAGAATTTCACGTTGCGGGCGAGGGTCACCCAGCTCGAAAACG
CCAGTACCAAGGACACCGGGTCATCGCAAATACCCGCGACCAGCTGCGGC
GGTAACCAGCTCATCGACACCTGCTGGTTAAAGATGGGGTGGGGGGACTG
CACGGAAAACGTGATGGAGGATTACTCTATGAAGCCGTTCGAGGACGCCT
TTCGCGTCGCTTGGGACTCCACTGCCGAGGTCGTGGGGATCGTATCCGAC
ACCGTCAAGAGCGACCTACGACAGGTGTGCGACGCGATCCACTCGTTGGG
TAGATTCATCTTCGAGCTTTGA
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