mRNA_P-littoralis_Contig19.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.85.1
Unique NamemRNA_P-littoralis_Contig19.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.85.1 vs. uniprot
Match: D7FLT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 2.300e-50
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1 
Query:    1 PDWICLLLQRDRDARRAWQLLKAVQTSGWGGSASKPKPAKGQLQNPEKEAYVDSAAVAESKLELQEERAAQGLSTEPTPAFEVEEVDDWE 270
            PDWICLLLQRDRDARRAWQLLKAVQTSGWGGS+SKPKPAKGQLQNPEKEAYVDSAA+AESKLELQEERAAQGLS EPTP+FEVEEVDDWE
Sbjct:   69 PDWICLLLQRDRDARRAWQLLKAVQTSGWGGSSSKPKPAKGQLQNPEKEAYVDSAALAESKLELQEERAAQGLSNEPTPSFEVEEVDDWE 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT4_ECTSI2.300e-5095.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:422019..423863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1216
Hectar predicted targeting categoryother localisation
Exons2
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789909.795588-CDS-P-littoralis_Contig19:422018..4221621680789909.795588-CDS-P-littoralis_Contig19:422018..422162Pylaiella littoralis U1_48CDSP-littoralis_Contig19 422019..422162 +
1680789909.8046222-CDS-P-littoralis_Contig19:422792..4232991680789909.8046222-CDS-P-littoralis_Contig19:422792..423299Pylaiella littoralis U1_48CDSP-littoralis_Contig19 422793..423299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789909.8134577-UTR-P-littoralis_Contig19:423299..4238631680789909.8134577-UTR-P-littoralis_Contig19:423299..423863Pylaiella littoralis U1_48UTRP-littoralis_Contig19 423300..423863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.85.1prot_P-littoralis_Contig19.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 422019..423299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.85.1

>prot_P-littoralis_Contig19.85.1 ID=prot_P-littoralis_Contig19.85.1|Name=mRNA_P-littoralis_Contig19.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=217bp
PDWICLLLQRDRDARRAWQLLKAVQTSGWGGSASKPKPAKGQLQNPEKEA
YVDSAAVAESKLELQEERAAQGLSTEPTPAFEVEEVDDWEVRRSSTISCT
VPKLAKHTGIALSVSFDRLLPMRRNGIAIVSFRFIQHHAVMHRPCLPLVA
VERSSVVEAEEVDKFGKCGDERLNTEEPFIVIVACFFHLGASFSFHAFLP
GVKVPIPLASLLPPIT*
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mRNA from alignment at P-littoralis_Contig19:422019..423863+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.85.1 ID=mRNA_P-littoralis_Contig19.85.1|Name=mRNA_P-littoralis_Contig19.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1845bp|location=Sequence derived from alignment at P-littoralis_Contig19:422019..423863+ (Pylaiella littoralis U1_48)
CCCGACTGGATCTGTCTGCTGCTCCAGAGGGACCGCGACGCCCGCCGCGC
TTGGCAATTGCTTAAGGCCGTGCAGACCTCCGGCTGGGGCGGCTCCGCGT
CCAAGCCCAAGCCGGCCAAGGGGCAGCTCCAAAATCCCGAAAAAGTGAGA
TGATTTGATTCGCAGAAGCATTATTTTTCACGGATTCGCAGAAGCATCAT
TCTTGATGACCATCCTTTCACCCTCACCATGACTTGGACTTGATTTCATC
ACATTTCACCTGACCTGCTGTTCTGTATGATACAGCAGGTGGATTTTGTC
CTGATGGGTGTTGTAAATGTTGAGCCCCCAATCGCCATTTGTGTCTTGCA
GTAAAACATAATCTTTGGGCTGTCTTGAGCGTGTGGGTCCTGTTATACGA
TGACTTGGTTTTAGTCCAGCATGCGCCTTTCGTGTCATAATGACGCACAT
CAGGTTTGTCTTGGTTTTCGTTTTTGTTTGTTGAACTGTTTCCAATTTTT
TTTTATTTTTCGAACCTGTTATTTTTTTTCTGTATTTTGTTTGGTACTTT
GGCCACCACAGATGGTACCCCAACGGAACCCTTTCTGATTTGACTGTGGC
TGATCATAGTCCATATTTTTTTTTTCTATTTTTTTTTCGTCCTAGCACGA
TATGTGCCTGGTTCGTGTCCACGGGCTAGACTGCGGCGGTAGTGAGCTAA
TGTGAGAATCAACATCCTACGAAAGCACATTTGACGTCCTCTTCCTTTTG
TGGACAACTTCGGCGCCTTTTCAGGAAGCGTACGTCGACTCGGCCGCCGT
TGCCGAAAGCAAGCTGGAGCTCCAGGAGGAGCGTGCCGCGCAGGGGCTCA
GCACCGAGCCCACCCCTGCGTTCGAAGTCGAGGAGGTTGACGACTGGGAG
GTGAGGAGAAGTTCGACAATTTCATGTACTGTTCCAAAACTTGCAAAGCA
TACGGGCATCGCTCTGTCTGTCTCTTTCGATCGCCTGCTTCCCATGCGAA
GAAATGGAATAGCTATTGTATCATTTCGATTTATTCAGCACCATGCTGTC
ATGCACCGGCCGTGCTTGCCTTTGGTTGCCGTTGAAAGGTCGAGTGTTGT
CGAAGCTGAGGAGGTGGACAAGTTCGGGAAGTGTGGCGATGAGAGGTTGA
ACACAGAAGAACCATTTATTGTGATTGTTGCATGTTTTTTCCACCTCGGC
GCTAGCTTCTCATTCCACGCGTTTCTGCCAGGAGTGAAAGTGCCCATCCC
TCTTGCTTCCTTGTTACCGCCGATAACGTAAGATACCGCACCCCCTGAAC
TGATTTTGACGGCTTGTCCTCTCCACAGCAACAGGAGTGGCAGTGCCGAT
AACGATGGCGTTTTAAAAATCTCGCCGACAGCTTTCGGGAAACAAATCGT
TCGGTACAGTGTTGAACAACACTCCTCCTCCTCTTCGTTTCGGAGTAATC
GACCTGCAAAAGTTGGTCCAGTGGGGTGTGGGATCTTGTGCCACGTACGG
GAGATGCATCCACGCACCTGTCCGTAGCTTTGGCATCCGACCCCCGGACT
GCCTTTTTTCGCACTTTTTTATTTGATGCCTTGCCCCTTCTCATCTGACC
CCTGTCGGCTTGTCGTTCGTGAAAGGCCCGTGACTCTGGCTGTTGCTTAT
ATTCTCTCCTGTACTTCGTGTAAGTGTAATTTGTTTTATTCACGCCCTTT
TTTGTCATGTTGTTTTCCTTTACACGCTGTTGATTTCGCTCACAAACCAA
ATCGCCACCGCAGACCCTGGACGATCTTCCCGGCGACGAGCCCACGGGGG
CTTAGAGTGTCCACCTCCCGGTGTACGCGCCGCACACACCGAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:422019..423863+

>mRNA_P-littoralis_Contig19.85.1 ID=mRNA_P-littoralis_Contig19.85.1|Name=mRNA_P-littoralis_Contig19.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=651bp|location=Sequence derived from alignment at P-littoralis_Contig19:422019..423863+ (Pylaiella littoralis U1_48)
CCCGACTGGATCTGTCTGCTGCTCCAGAGGGACCGCGACGCCCGCCGCGC
TTGGCAATTGCTTAAGGCCGTGCAGACCTCCGGCTGGGGCGGCTCCGCGT
CCAAGCCCAAGCCGGCCAAGGGGCAGCTCCAAAATCCCGAAAAAGAAGCG
TACGTCGACTCGGCCGCCGTTGCCGAAAGCAAGCTGGAGCTCCAGGAGGA
GCGTGCCGCGCAGGGGCTCAGCACCGAGCCCACCCCTGCGTTCGAAGTCG
AGGAGGTTGACGACTGGGAGGTGAGGAGAAGTTCGACAATTTCATGTACT
GTTCCAAAACTTGCAAAGCATACGGGCATCGCTCTGTCTGTCTCTTTCGA
TCGCCTGCTTCCCATGCGAAGAAATGGAATAGCTATTGTATCATTTCGAT
TTATTCAGCACCATGCTGTCATGCACCGGCCGTGCTTGCCTTTGGTTGCC
GTTGAAAGGTCGAGTGTTGTCGAAGCTGAGGAGGTGGACAAGTTCGGGAA
GTGTGGCGATGAGAGGTTGAACACAGAAGAACCATTTATTGTGATTGTTG
CATGTTTTTTCCACCTCGGCGCTAGCTTCTCATTCCACGCGTTTCTGCCA
GGAGTGAAAGTGCCCATCCCTCTTGCTTCCTTGTTACCGCCGATAACGTA
A
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