mRNA_P-littoralis_Contig19.63.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.380e-24 Identity = 66/138 (47.83%), Postives = 87/138 (63.04%), Query Frame = 3
Query: 972 RCLYAFVVALKRACENGQKGWFASTLELQVASLGFCKACRRFPTLHVHVRWTTAPSLRDPRESLPV---SSRVPFVKAVGLTWALRTKDLLNRFETEAWEWLETLRIKLHGKNAKTILGLEQAVWPQGLKRLTLDAGV 1376
RCL AFVVAL + E G+K W+ STL+LQ+ASL FC ACR P LHV+V T P+L ++ P S+RVP V+AVGLTWA T+ L +E W LE+L++++ A L+ VWPQGL+RL +D V
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTAN----LDSVVWPQGLQRLVMDCTV 141
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.520e-24 Identity = 71/152 (46.71%), Postives = 91/152 (59.87%), Query Frame = 3
Query: 969 SRCLYAFVVALKRACENGQKGWFASTLELQVASLGFCKACRRFPTLHVHVRWTTAPSLRDPRES----------LPVSSRVPFVKAVGLTWALRTKDLLNRFETEAWEWLETLRIKLHGKNAKTILGLEQAVWPQGLKRLTL----DAGVGT 1382
+RCL AFV+AL +ACE G+K W+ASTLELQ+ SL C+ACR LHVHV T SL R + L +SSRVP V+A+ LTWAL + LL + E W W E R++L G + + LG E VWP+GL +L L D +GT
Sbjct: 9 TRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSE--RLELLGSSCVSSLGSE-VVWPRGLTQLVLYTDSDIAMGT 157
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 4.550e-17 Identity = 64/182 (35.16%), Postives = 86/182 (47.25%), Query Frame = 3
Query: 963 GTSRCLYAFVVALKRACENGQKGWFASTLELQVASLGFCKACRRFPTLHVHVRWTTAPSLRDPRESLP---------------------------------------VSSRVPFVKAVGLTWALRTKDLLNRFETEAWEWLETLRIKLHGKNAKTILGLEQAVWPQGLKRLTLDAGVGTPLS 1391
G SR A ++A+ +A E K W+ STLEL++ASL C+ACRR PT+HV V T PSL P ++P +SSRVP +A+GLTWAL T+ LL E W LE L+++ + + L WPQ LKRL L+ G +S
Sbjct: 5 GASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPH-AMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLR----ESLSPSDLVSVAWPQNLKRLALETGFEAAIS 181
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 3.500e-12 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3
Query: 963 GTSRCLYAFVVALKRACENGQKGWFASTLELQVASLGFCKACRRFPTLHVHV 1118
G +CL AF+VAL + C+ + W+ASTLELQ+ SL FC ACRRFPTLHV V
Sbjct: 5 GRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRV 56
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.330e-9 Identity = 57/148 (38.51%), Postives = 73/148 (49.32%), Query Frame = 3
Query: 963 GTSRCLYAFVVALKRACENGQKGWFASTLELQVASLGFCKACRRFPTLHVHVRWTT-----APSLRDPRESLP---------VSSRVPFVKAVGLTWALRTKDLLNRFETEAWEWLETLRIKLHGKNAKTILGLEQAVWPQGLKRLTL 1364
G S+CL AFVVAL C+ G+K W+AST +LQ+ASL CKACR PTL + V +T A + R PR L +RVP + W LR ++L E W ++ L + N G WP GLKRL L
Sbjct: 8 GDSQCLEAFVVALDLTCD-GEK-WYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRAREL-GLARKELWANVQCLLFTGY-HNDWVCDGFS---WPTGLKRLDL 148
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.630e-7 Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 3
Query: 969 SRCLYAFVVALKRAC-ENGQKGWFASTLELQVASLGFCKACRRFPTLHVHVRWTTAPSLRDPRESLPVSS----RVPFVKAVGLTWALRTKDLLN 1238
SR L +V L +AC + GQK WFAST ELQ+ASL C+ACR LH+ V +T L P +S S RVP ++A ++W L + D L+
Sbjct: 27 SRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEEGTRVPRLRAREVSWDLTSADRLS 121
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 2.500e-6 Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 3
Query: 1032 WFASTLELQVASLGFCKACRRFPTLHVHVRWTTAPSLRDPRESLPVSS---------------RVPFVKAVGLTWALRTKDLLNRFETEAWEWLETLRI 1283
WF STL +Q+ASL FC+A R PT+ +HV SL D R+S SS RVP ++A L W L + LL E W L++L +
Sbjct: 5 WFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKSQTPSSTRGLEIRCWKARPLSRVPLIRASRLNWGLSMETLLQSTAVELWTGLKSLHL 103
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 8.380e-6 Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 3
Query: 963 GTSRCLYAFVVALKRACENGQKGWFASTLELQVASLGFCKACRRFPTLHVHV 1118
G S CL A VVAL C+ K W+ ST ELQ+ASLGFC ACR T+H+ V
Sbjct: 132 GRSSCLNAIVVALSETCDG--KSWYTSTKELQLASLGFCTACRNHQTVHLKV 181
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 2.170e-5 Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 3
Query: 969 SRCLYAFVVALKRAC-ENGQKGWFASTLELQVASLGFCKACRRFPTLHVHVRWTTAPSLRDPRESLPVSS----RVPFVKA 1196
SR L +V L +AC + GQK WFAST ELQ+ASL C+ACR LH+ V +T L P +S S RVP ++A
Sbjct: 27 SRFLDVAIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVDTSTPLRLFAPADSPSDDSEEDTRVPRLRA 107
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 9.400e-5 Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 3
Query: 1017 NGQKGWFASTLELQVASLGFCKACRRFPTLHVHVR-------W--TTAPSLRDPRESLPVSSRVPFVKAVGLTWALRTKDLLNRFETEAWEWLETLRIKLHGKNAKTILGLEQAVWPQGLKRL 1358
+G GW+ S L+LQ+ASL C ACRR PT H+ V W + A + R SL SRVP ++ +TW L T + R +A+E ++ L + G + +++ WP GLK+L
Sbjct: 27 SGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLG-QSRVPALRPRKVTWNLATLSM--RHCGDAFESVDVL---VFGDSFD--YRVDRVTWPPGLKKL 141 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.63.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig19.63.2 >prot_P-littoralis_Contig19.63.2 ID=prot_P-littoralis_Contig19.63.2|Name=mRNA_P-littoralis_Contig19.63.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=907bp MADANGGGASLPGAESGAAGMMGEETALSKLAASRKRAEILKKEASAVRGback to top mRNA from alignment at P-littoralis_Contig19:344139..350581- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig19.63.2 ID=mRNA_P-littoralis_Contig19.63.2|Name=mRNA_P-littoralis_Contig19.63.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6443bp|location=Sequence derived from alignment at P-littoralis_Contig19:344139..350581- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig19:344139..350581- >mRNA_P-littoralis_Contig19.63.2 ID=mRNA_P-littoralis_Contig19.63.2|Name=mRNA_P-littoralis_Contig19.63.2|organism=Pylaiella littoralis U1_48|type=CDS|length=2721bp|location=Sequence derived from alignment at P-littoralis_Contig19:344139..350581- (Pylaiella littoralis U1_48)back to top |