mRNA_P-littoralis_Contig19.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.43.1
Unique NamemRNA_P-littoralis_Contig19.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: D7G6Q9_ECTSI (Obg-like ATPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q9_ECTSI)

HSP 1 Score: 756 bits (1951), Expect = 1.800e-271
Identity = 392/416 (94.23%), Postives = 408/416 (98.08%), Query Frame = 2
Query:   44 MLMRCMAGTMLLAGARTLAFRPPSTIWGVKVAGQAAMRNRQVGSPVRSSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNVSK 1291
            MLMRCMAGT+LLAGARTLAFRPPSTIWGVKVAGQAAMR RQVGSPVRSSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVL+EINKSVKT+PSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFED DIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQK ++DKKATA EK+GLAKLLK LEEG+PVRTVELTE+EAKDTAYLGLLTAKKVIYACNVAD+DLADGN MVD VRKFAE+EG+RVV+VSAQVESELVDLDG+DKQEFLESLGVSEETCGLRALV+EAYTALGLQTYFTSGETETKAWTIY+GWTAP+AAGVIHSDFERGFIRAEAIKYEDLV CGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNVSK
Sbjct:    1 MLMRCMAGTVLLAGARTLAFRPPSTIWGVKVAGQAAMR-RQVGSPVRSSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLAEINKSVKTVPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDPDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKVAKDKKATASEKTGLAKLLKVLEEGKPVRTVELTEEEAKDTAYLGLLTAKKVIYACNVADSDLADGNAMVDGVRKFAEEEGARVVIVSAQVESELVDLDGEDKQEFLESLGVSEETCGLRALVKEAYTALGLQTYFTSGETETKAWTIYAGWTAPKAAGVIHSDFERGFIRAEAIKYEDLVNCGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNVSK 415          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A835ZA16_9STRA (Obg-like ATPase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA16_9STRA)

HSP 1 Score: 528 bits (1359), Expect = 1.350e-181
Identity = 274/368 (74.46%), Postives = 314/368 (85.33%), Query Frame = 2
Query:  182 RSSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            R++++MKLKTGIVGMPNVGKSTLFNA+TE Q A   NYPF TIEPN+GVV VPD RL +L  INKS K IP++L+F DIAGLVKGASKGEGLGN+FLANIRECDAIVHVVRCFEDSDIIHV+G+VDPVRDI+ IN+ELALAD+AQVEKRLQ+ +RDK     EK+ L KL+KAL+ GQ  R++ L E+EA     L LLT K++IYA NV DTDLADGN  VD VRKFAE+EGSRVV+VSAQVESELV+L G D+ EFL SLGV+E +CGL ALV+EAY  LGL+TYFTSGETET+AWTI +GW APQAAGVIHSDFERGFIRAE I Y DLVECGSEKAA+EKG++RSEGKEYVVQEGDV+ FRFNV
Sbjct:   46 RATASMKLKTGIVGMPNVGKSTLFNALTEQQAAQAENYPFCTIEPNVGVVAVPDPRLDILGTINKSQKVIPTSLEFVDIAGLVKGASKGEGLGNKFLANIRECDAIVHVVRCFEDSDIIHVDGNVDPVRDIETINLELALADLAQVEKRLQRLARDKNVVPAEKTALEKLVKALDAGQAARSIALDEEEAAAVRGLMLLTQKQMIYAANVPDTDLADGNAFVDAVRKFAEEEGSRVVLVSAQVESELVELSGADRAEFLGSLGVAEGSCGLPALVKEAYELLGLRTYFTSGETETRAWTIQTGWRAPQAAGVIHSDFERGFIRAETIAYGDLVECGSEKAAREKGVMRSEGKEYVVQEGDVMLFRFNV 413          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7S1VBU5_9STRA (Obg-like ATPase 1 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VBU5_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 9.610e-168
Identity = 252/367 (68.66%), Postives = 304/367 (82.83%), Query Frame = 2
Query:  185 SSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            S  +MKL+T IVG+PNVGKSTLFNA+TE+QGA  ANYPF TIEPN+G V VPD +L VL +IN+SVKT+P+TL+F D+AGLVKGAS GEGLGNQFLA IR+CDAI HVVRCFED ++IHV+G+VDP+RD ++IN+ELALAD+A VEKRLQ+  +DKKA   E S L K+   LE+ +P RT +LTEDE      LGLLT KK+IYA NVAD DLA+GN+MV+ +R+ A+ EG+++V+VSAQVE+ELV+LD ++K+EFLESLGV+ E CGLRALVREAY  L LQT++TSG TET+AWTI  GW APQAAGVIH+DFERGFIRAE I YEDLVE GSE   K +G LRSEGKEYVVQEGDV+ FRFNV
Sbjct:   72 SKLSMKLQTAIVGLPNVGKSTLFNALTESQGAEAANYPFCTIEPNVGTVCVPDPKLPVLEKINESVKTVPATLEFVDVAGLVKGASDGEGLGNQFLATIRQCDAITHVVRCFEDENVIHVDGTVDPIRDAELINLELALADLASVEKRLQRVKKDKKAPKEEASALEKVFAVLEQDKPARTAQLTEDEELSLKGLGLLTRKKMIYAANVADADLAEGNEMVNRLRELADKEGAKLVIVSAQVEAELVELDTEEKEEFLESLGVNLEDCGLRALVREAYDLLKLQTFYTSGPTETRAWTIRQGWKAPQAAGVIHNDFERGFIRAETISYEDLVEHGSELECKAQGKLRSEGKEYVVQEGDVILFRFNV 438          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7R9UJV0_DIALT (Obg-like ATPase 1 n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UJV0_DIALT)

HSP 1 Score: 491 bits (1263), Expect = 3.460e-167
Identity = 262/390 (67.18%), Postives = 316/390 (81.03%), Query Frame = 2
Query:  134 VAGQAAMRNRQVGSPVR----SSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTV--ELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            VA +AA R+  +G+P R    S  TMKL+TGIVGMPNVGKSTLFNA+TE QGA  ANYPF TIEPN GVVEVPD RLKVL+EINKSVK +P++L+F DIAGLVKGAS GEGLGNQFLANIRECDAI HVVRCF+D ++IHV+GSVDPVRD D+IN+EL LAD+AQVEKRL++ ++DKK    EK+ LAK+ + L  G+P R++  +L+ +E      L LLTAKK+IYA NV D+D+A+GN++V  +   A+ EG+ VVVVSAQVE+EL+DL  +++ EFLESLGVS + CGLR LVR AY  LGL+TYFTSG TET+AWTI  GWTAPQAAGVIH DFERGFIRAE I Y+DLV+ GSEK A++ G+LRSEGKEYVV EGDV+ FRFNV
Sbjct:   17 VASRAA-RSSGLGAPRRGFHASRVTMKLRTGIVGMPNVGKSTLFNALTETQGAEAANYPFCTIEPNTGVVEVPDPRLKVLAEINKSVKVVPASLEFVDIAGLVKGASTGEGLGNQFLANIRECDAITHVVRCFDDPNVIHVDGSVDPVRDADVINLELVLADLAQVEKRLERCAKDKKTDPTEKAALAKVKEVLNLGKPARSLLPDLSVEERVWLDRLQLLTAKKMIYAANVPDSDMANGNELVRKLDVLAKKEGASVVVVSAQVEAELIDLSPEERAEFLESLGVSLDDCGLRRLVRAAYDLLGLRTYFTSGPTETRAWTIQQGWTAPQAAGVIHGDFERGFIRAETIGYDDLVKAGSEKGARDAGVLRSEGKEYVVNEGDVMLFRFNV 405          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7S1BGY0_9STRA (Obg-like ATPase 1 n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGY0_9STRA)

HSP 1 Score: 489 bits (1260), Expect = 1.730e-166
Identity = 251/364 (68.96%), Postives = 302/364 (82.97%), Query Frame = 2
Query:  197 MKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRD-KKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            M LKT IVG+PNVGKSTLFNA+TE QGA  ANYPF TIEPN+G+VEVPD RL+VL +IN+SVK IPSTL+F DIAGLVKGA+ GEGLGN+FL NIR+CDAIVHVVRCF+D ++IHV+GSVDPVRD ++IN+ELALAD+AQ EKRLQK  +D KK +  EK  L K++  LE  QP R  EL E+E  +   LGLLT KK+IYA NVAD DLA+GN+MV+ +++ A+ EG+ VV+VSAQVE+ELV+L+ DD+ +FLESLGV+ E CGLR LV EAY  L LQTYFTSG TET+AWTI +GW APQAAGVIH+DFE+GFIRAE + Y+DLV+CG E+ AK KGLLRSEGK+YVVQEGDV+ FRFNV
Sbjct:   58 MGLKTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVEVPDPRLEVLKKINESVKVIPSTLEFVDIAGLVKGAASGEGLGNKFLGNIRQCDAIVHVVRCFDDENVIHVDGSVDPVRDAEVINLELALADLAQAEKRLQKVVKDRKKDSDTEKRALEKVIAVLEADQPARNAELDEEEELEIKGLGLLTRKKMIYAANVADGDLAEGNEMVERLKETADKEGAAVVLVSAQVEAELVELEADDRNDFLESLGVTLEGCGLRKLVSEAYDILNLQTYFTSGPTETRAWTIGTGWKAPQAAGVIHTDFEKGFIRAETMSYQDLVDCGDEQTAKSKGLLRSEGKDYVVQEGDVILFRFNV 421          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7S4JBD1_9STRA (Obg-like ATPase 1 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JBD1_9STRA)

HSP 1 Score: 489 bits (1259), Expect = 2.050e-166
Identity = 251/382 (65.71%), Postives = 304/382 (79.58%), Query Frame = 2
Query:  152 MRNRQVGSPVRSSS----TMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            +R   +G+  RS S     MKL+T IVG+PNVGKSTLFNA+TE QGA  ANYPF TIEPN+G+VEVPD +L VL +IN S K +P+TL+F D+AGLVKGAS GEGLGNQFLA IR+CDAIVHVVRCFED ++IHV+GSVDPVRD ++IN+ELALAD+AQVEKRLQ+  +D+KA   E   L K+   L   +P R  EL EDE      LGLLT KK+IYA NVAD+DLA+GN++V+ ++  AE EG+ +V+VSAQVE+ELV+L+ DD+ +FLE+LGV+ E CGLRALVREAY  L LQTY+TSG TET+AWTI  GW+AP+AAGVIH DFERGFIRAE I Y+DLVE GSE  AK KGL RSEGK+Y+VQEGDV+ FRFNV
Sbjct:   35 LRTCSLGTATRSYSKTALNMKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVEVPDPKLSVLEKINSSEKVVPATLEFVDVAGLVKGASDGEGLGNQFLATIRQCDAIVHVVRCFEDDNVIHVDGSVDPVRDAELINLELALADLAQVEKRLQRVKKDRKADGIEAQALEKVAAVLNNDEPARNAELDEDEEDVIKSLGLLTGKKMIYAANVADSDLAEGNELVEKLKGLAESEGANMVLVSAQVEAELVELEDDDRNDFLEALGVTLEDCGLRALVREAYDILQLQTYYTSGPTETRAWTIKKGWSAPKAAGVIHGDFERGFIRAETISYDDLVESGSEAEAKSKGLTRSEGKDYIVQEGDVILFRFNV 416          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7S2WIQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIQ3_9STRA)

HSP 1 Score: 489 bits (1258), Expect = 2.620e-166
Identity = 244/365 (66.85%), Postives = 302/365 (82.74%), Query Frame = 2
Query:  185 SSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRF 1279
            +S TMK++T IVG+PNVGKSTLFNA+TE QGA  ANYPF TIEPN+G+VEVPD +L VL +IN+SVK +P+TL+F D+AGLVKGAS GEGLGNQFLA IR+CDAIVHVVRCFED ++IHV+GSVDPVRD ++IN+ELA AD+AQVEKRL +  +D+K+ A E+S L K+   L + +P R  EL E+E      LGLLT KK+IYA NVAD+DLADGN+MV+ +R  A+ EG+++ +VSAQVE+ELV+L+ +D+ EFLE+LGVS + CGLRALVR+AY  L LQTY+TSG TET+AWTI  GWTAP+AAGVIH+DFERGFI+AE I Y DLV+ GSEK AKEKG +RSEGK+YVV EGDV+ FRF
Sbjct:   49 TSLTMKIQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVEVPDPKLAVLCDINESVKVVPTTLEFVDVAGLVKGASDGEGLGNQFLATIRQCDAIVHVVRCFEDENVIHVDGSVDPVRDAELINLELAFADLAQVEKRLARVKKDRKSEAGEQSALEKVAAVLNKDEPARNAELDEEEELSIKSLGLLTRKKMIYAANVADSDLADGNEMVERLRAVADSEGAKIAIVSAQVEAELVELEQEDRDEFLEALGVSMDDCGLRALVRDAYDILQLQTYYTSGPTETRAWTINKGWTAPKAAGVIHNDFERGFIKAETISYNDLVDAGSEKVAKEKGFMRSEGKDYVVAEGDVILFRF 413          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: B7G217_PHATC (Obg-like ATPase 1 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G217_PHATC)

HSP 1 Score: 486 bits (1251), Expect = 5.120e-166
Identity = 243/363 (66.94%), Postives = 299/363 (82.37%), Query Frame = 2
Query:  197 MKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            MKL+T IVG+PNVGKSTLFNA+TE QGA  ANYPF TIEPN+G+V VPD +L++L +INKSVK +P+ L+F D+AGL+KGAS GEGLGNQFLA+IR+CDA+VHVVRCFED D++HV+GS+DPVRD ++IN+ELALAD++QVEKRL++  +D+ A+  EKS L K+   L + QP R V L E+E      LGLLTAKK++YA NV D DLA+GN+MVD +R+ AE EG+++VVVSAQVE+ELV+L   D+ +FLESLGV  E  GLR LVREAY  LGLQTY+TSG TET+AWTI  GWTAP+AAGVIH+DFERGFIRAE + Y+DLV CGSE  AK KG LRSEGK+Y+VQEGDV+ FRFNV
Sbjct:    1 MKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVSVPDPKLEILKDINKSVKVVPAALEFVDVAGLIKGASTGEGLGNQFLASIRQCDAVVHVVRCFEDEDVVHVDGSIDPVRDAELINLELALADLSQVEKRLERVRKDRNASPVEKSALEKVAAVLLKDQPARNVVLDEEEENAIKSLGLLTAKKMVYAANVGDADLANGNEMVDRLRETAEKEGAKLVVVSAQVEAELVELSVGDRTDFLESLGVKLEDTGLRKLVREAYDILGLQTYYTSGPTETRAWTIRKGWTAPKAAGVIHNDFERGFIRAETVSYDDLVACGSEIEAKNKGKLRSEGKDYIVQEGDVILFRFNV 363          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7S2E966_9STRA (Obg-like ATPase 1 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E966_9STRA)

HSP 1 Score: 486 bits (1252), Expect = 2.270e-165
Identity = 252/376 (67.02%), Postives = 300/376 (79.79%), Query Frame = 2
Query:  170 GSPVRSSST----MKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            GS +RS S+    MKL+T IVG+PNVGKSTLFNA+TE QGA  ANYPF TIEPN+G+VEVPD +L VL +IN S K +P+TL+F D+AGLVKGAS GEGLGNQFL+ IR+CDAIVHVVRCFED ++IHV+GSVDPVRD ++IN+ELALAD+AQVEKRL +  +D+KA   E   L K+   L   +P R   L +DE      LGLLT KK+IYA NVAD DLA+GN M   +++ A+ EG+ +V+VSAQVE+ELV+L+ +DK +FLE+LGVS E CGLRALVREAY  L LQTY+TSG TET+AWTI  GWTAP+AAGVIH DFERGFIRAE I Y+DLVECGSE A K KGLLRSEGKEYVVQEGDV+ FRFNV
Sbjct:   40 GSSMRSYSSTKLSMKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVEVPDAKLAVLEKINNSAKVVPATLEFVDVAGLVKGASAGEGLGNQFLSTIRQCDAIVHVVRCFEDENVIHVDGSVDPVRDAELINLELALADLAQVEKRLLRVKKDRKADPAEAKALEKVAAVLNNDEPARNAVLEDDEELAIKSLGLLTRKKMIYAANVADGDLAEGNDMSRRLKEHADKEGANLVLVSAQVEAELVELEDEDKLDFLEALGVSLENCGLRALVREAYDILALQTYYTSGPTETRAWTIGKGWTAPKAAGVIHGDFERGFIRAETITYDDLVECGSESAVKAKGLLRSEGKEYVVQEGDVILFRFNV 415          
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Match: A0A7S1ZHA1_TRICV (Obg-like ATPase 1 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1ZHA1_TRICV)

HSP 1 Score: 486 bits (1252), Expect = 6.690e-165
Identity = 250/384 (65.10%), Postives = 305/384 (79.43%), Query Frame = 2
Query:  134 VAGQAAMRNRQVGSPVRSSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPDGRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKASRDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKVIYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDDKQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGWTAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 1285
            VAG AA       S  R++ +MKL+T IVG+PNVGKSTLFNA+TE QGA  ANYPF TIEPN+G+V VPD +L  L +IN S K +P+TL+F D+AGLVKGAS GEGLGNQFLA IR+CDAIVHVVRCFED ++IHV+GSVDPVRD ++IN+ELALAD+AQVEKRLQ+  +D+KA   E   L K+   L   +P R  +L EDE      LGLLT KK+IYA NVAD+DLA+GN++V+ +++ A  EG+ VV+VSAQVE+ELV+L+ +DK EFLE+LGV+ + CGLRALVREAY  L LQTY+TSG TE++AWTI  GWTAP+AAGVIH DFERGFIRAE I Y+DLVECGSE  AK +GLLRSEGKEYVV++ DV+ FRFNV
Sbjct:   69 VAGSAAR------SYSRTALSMKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVAVPDAKLSALEKINNSAKVVPTTLEFVDVAGLVKGASAGEGLGNQFLATIRQCDAIVHVVRCFEDENVIHVDGSVDPVRDAELINLELALADLAQVEKRLQRVKKDRKADPAEAQALEKVAAVLNNDEPARNADLDEDEENAIKSLGLLTRKKMIYAANVADSDLAEGNELVEKLKQRAASEGANVVLVSAQVEAELVELEPEDKNEFLEALGVTIDDCGLRALVREAYDVLELQTYYTSGPTESRAWTIKKGWTAPKAAGVIHGDFERGFIRAETISYDDLVECGSEAEAKSRGLLRSEGKEYVVRDSDVILFRFNV 446          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q9_ECTSI1.800e-27194.23Obg-like ATPase 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835ZA16_9STRA1.350e-18174.46Obg-like ATPase 1 n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S1VBU5_9STRA9.610e-16868.66Obg-like ATPase 1 n=1 Tax=Grammatophora oceanica T... [more]
A0A7R9UJV0_DIALT3.460e-16767.18Obg-like ATPase 1 n=2 Tax=Diacronema lutheri TaxID... [more]
A0A7S1BGY0_9STRA1.730e-16668.96Obg-like ATPase 1 n=3 Tax=Corethron hystrix TaxID=... [more]
A0A7S4JBD1_9STRA2.050e-16665.71Obg-like ATPase 1 n=1 Tax=Odontella aurita TaxID=2... [more]
A0A7S2WIQ3_9STRA2.620e-16666.85Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
B7G217_PHATC5.120e-16666.94Obg-like ATPase 1 n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2E966_9STRA2.270e-16567.02Obg-like ATPase 1 n=1 Tax=Ditylum brightwellii Tax... [more]
A0A7S1ZHA1_TRICV6.690e-16565.10Obg-like ATPase 1 n=2 Tax=Bacillariophyta TaxID=28... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:280807..289778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6Q9
PFAMsMMR_HSR1,YchF-GTPase_C
Model size1797
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons9
Evalue2.58e-275
EggNOG OGsCOG0012@1|root,KOG1491@2759|Eukaryota
Ec32 ortholog descriptionPYchF, plastid YchF-like GTPase
Ec32 orthologEc-26_000480.1
DescriptionGTP binding
Cds size1251
COG categoryJ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.43.1prot_P-littoralis_Contig19.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 280850..289275 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789908.6300688-UTR-P-littoralis_Contig19:280806..2808491680789908.6300688-UTR-P-littoralis_Contig19:280806..280849Pylaiella littoralis U1_48UTRP-littoralis_Contig19 280807..280849 +
1680789908.7575736-UTR-P-littoralis_Contig19:289275..2897781680789908.7575736-UTR-P-littoralis_Contig19:289275..289778Pylaiella littoralis U1_48UTRP-littoralis_Contig19 289276..289778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789908.6420257-CDS-P-littoralis_Contig19:280849..2809401680789908.6420257-CDS-P-littoralis_Contig19:280849..280940Pylaiella littoralis U1_48CDSP-littoralis_Contig19 280850..280940 +
1680789908.6524565-CDS-P-littoralis_Contig19:282081..2823801680789908.6524565-CDS-P-littoralis_Contig19:282081..282380Pylaiella littoralis U1_48CDSP-littoralis_Contig19 282082..282380 +
1680789908.66272-CDS-P-littoralis_Contig19:282753..2828261680789908.66272-CDS-P-littoralis_Contig19:282753..282826Pylaiella littoralis U1_48CDSP-littoralis_Contig19 282754..282826 +
1680789908.6772087-CDS-P-littoralis_Contig19:283793..2839031680789908.6772087-CDS-P-littoralis_Contig19:283793..283903Pylaiella littoralis U1_48CDSP-littoralis_Contig19 283794..283903 +
1680789908.6921875-CDS-P-littoralis_Contig19:284791..2848851680789908.6921875-CDS-P-littoralis_Contig19:284791..284885Pylaiella littoralis U1_48CDSP-littoralis_Contig19 284792..284885 +
1680789908.7120228-CDS-P-littoralis_Contig19:285467..2855471680789908.7120228-CDS-P-littoralis_Contig19:285467..285547Pylaiella littoralis U1_48CDSP-littoralis_Contig19 285468..285547 +
1680789908.725302-CDS-P-littoralis_Contig19:286687..2868651680789908.725302-CDS-P-littoralis_Contig19:286687..286865Pylaiella littoralis U1_48CDSP-littoralis_Contig19 286688..286865 +
1680789908.7344868-CDS-P-littoralis_Contig19:287988..2881571680789908.7344868-CDS-P-littoralis_Contig19:287988..288157Pylaiella littoralis U1_48CDSP-littoralis_Contig19 287989..288157 +
1680789908.7474878-CDS-P-littoralis_Contig19:289118..2892751680789908.7474878-CDS-P-littoralis_Contig19:289118..289275Pylaiella littoralis U1_48CDSP-littoralis_Contig19 289119..289275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.43.1

>prot_P-littoralis_Contig19.43.1 ID=prot_P-littoralis_Contig19.43.1|Name=mRNA_P-littoralis_Contig19.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=417bp
MLMRCMAGTMLLAGARTLAFRPPSTIWGVKVAGQAAMRNRQVGSPVRSSS
TMKLKTGIVGMPNVGKSTLFNAVTEAQGAMCANYPFATIEPNIGVVEVPD
GRLKVLSEINKSVKTIPSTLDFYDIAGLVKGASKGEGLGNQFLANIRECD
AIVHVVRCFEDSDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKAS
RDKKATAPEKSGLAKLLKALEEGQPVRTVELTEDEAKDTAYLGLLTAKKV
IYACNVADTDLADGNKMVDDVRKFAEDEGSRVVVVSAQVESELVDLDGDD
KQEFLESLGVSEETCGLRALVREAYTALGLQTYFTSGETETKAWTIYSGW
TAPQAAGVIHSDFERGFIRAEAIKYEDLVECGSEKAAKEKGLLRSEGKEY
VVQEGDVLHFRFNVSK*
back to top

mRNA from alignment at P-littoralis_Contig19:280807..289778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.43.1 ID=mRNA_P-littoralis_Contig19.43.1|Name=mRNA_P-littoralis_Contig19.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8972bp|location=Sequence derived from alignment at P-littoralis_Contig19:280807..289778+ (Pylaiella littoralis U1_48)
ATAGCGCAGAGACCTGCGGTGATCCGTTCTCTCGGGCGTAGCCATGTTGA TGCGTTGTATGGCTGGAACGATGCTCCTCGCTGGAGCTCGAACGCTCGCT TTCCGCCCGCCGTCAACCATCTGGGGCGTCAAAGGTGAGAGTTGGGCGAC TCCCTGACTACCCCCCGTTGCTCGGTCGACGAGCATTGCCGCATGCTCCG CTCGGCAGCAGCATGCCTGCGCCATGGACATCCCTCGGAACACCTCACAA GTGACAACGTCCTCACAAATCTGGGGGTTGTCGGGTACTCCATACCCGAA TTCGAAATGATGTCGACAATTCGCTGTATTTTGCAGTGTCATACGTGGTA TAACACCCCCCACTGGGCAGACTGGGCAGACTGTGTTCACCGGAGCAGCA GTATCGCCAGTCGCCATCAAGTGTGATAGGAGTCATGGACCGTTTCAGGG CCGTAAATAATGTTTCTAGAAATATCTTGGTCGAGATCTTTCTGAACCGC CCCGGTTTTGGCAGTTGCACAACCCCTCTTCTTCATGGGGCAACCGAGCT CTGTAACCTCCGGGCTACAGAAGTACAGGACGTGTTTCGTTATACAGCGA CGGTTCTTGTGACTCCGTTTATCATATGATAGCTGCTTGGCATCGGCAAT CGGCACATACACCGGACACAGGAGGTCGATGACGTGAAGCCGTTGTAGAT GACATGTAGGGCTTGTATAAACTGAAAGCCGTTCCAGTAGCTATTCCCTC GCGTTATCGGCTCAAACCTTTCCCGCACCGCAGTGTTCAGCGCCTTCATA CATACTTCGAAGCCATATTATACGATTAGCACTTAACATGCTCGTGAGCA CCTGGTGCGATTTAGCTGGCGACCAAGCAACAGATCCACGAAAACCGGCC AACTGCTACTTCTGTCGATATGCGAAGAGAATCAGTATTGTCAATCACTT TGTTTGCTCATCATGTACGTACGTTTGCGTGAGGGTGCAAGTGCGACCTG CACTCCTTCACACTGTCTTGGCGTATCACATTATACGACCGAGCCAAATC GCCGTGCTCCATATTCACACAGCTACGCACGGTACTGCTGTCGCAGGCCG TTGCCCGTCACCAGAGCAGGCATTTTAATTACAACGCGTCCCACCGAAAC GTGTTGGACCAGACTACATTACAGTACGCCAAACCGTAACAGCACAAGTT CGTCGCGTGCTGTTTTCTGGTCTTGGGCTCTACTACTGCTGCTGCTACAA CATCTACTACGACTACGCACAACAGTGGCCGGTCAGGCCGCCATGCGCAA CAGACAGGTGGGATCGCCGGTCCGCTCTAGCTCGACGATGAAGCTCAAGA CTGGGATCGTGGGGATGCCGAACGTCGGAAAGTCGACTCTGTTCAACGCG GTCACGGAGGCGCAGGGGGCCATGTGCGCCAACTACCCGTTCGCGACGAT CGAGCCCAACATCGGGGTGGTGGAGGTCCCCGACGGAAGGCTCAAGGTTC TGTCCGAGATCAACAAGTCGGTCAAGACAATACCGAGCACGCTAGACTTC TACGATATCGCCGGGCTCGTCAAGGTGAGGCGGACAAACGGGCAGATGGA CGTATCATACATATGATGGGCGGACCTCTGCTGGAAAATCCCGGCAGGGT TCGGATCTTCCTATATCTTGATGTAAGCGCGTCGGTACAGTGGTTATGAT GTCACTACAGCCGTCATCCACATTTTTCTGGGTTTTTTTTTCAATTGAGG AGTTTTTTATTGTGTTTGTGTGTGTGTCCGTTCGAGCAATCAGCTGATAC TCCGGAGTAACAACCTGTCCCGTTGCTGCTGCATTCACTACTGTTGCTGC TCGTGAGTAGCACATATCACGCCGCCAACTTCCGCTCCTTTTTCCCTCCG CGAATGTAATCAAATTGATCCTTTGCGCGCATGTTGCTGTGTGACAGGGA GCGAGCAAGGGGGAGGGGCTAGGAAACCAGTTCCTGGCAAACATCCGGGA GTGCGACGCCATCGTCCACGGTAGGGTATACCGACGGCATTCCGATTGCT GTTTGTACTACTGTACGGCTGGGCGGGTGTTTTGACTTGGACCTACCTTC GCGGAAAGTGTAGACCCCCCCCCCCTCCCTTTCAGCGGTCTAGCAATCTA GCGGTCGGTTTTTGAGAAAGAAACATTGATGTCAGTCCGTGAAGTACAGA AGTACAAAAGAAACGAGAGCTTGTTATATTTCGCCTCGTTCAGAGCCGGA TCTCGGTCTTGGCATTTCCTGCTACGTAGGTGGCTGGGGGGGCTTGGGCG GCGGTTACGACTGTCGTCGGACGCCCGTCGTCGTCTTTGGTATCCTTCGC CGGGGCAGTGTTTTCCCTGCTCAGGACGGGCTTTGCTTGGTTCATACTCC GGAGTATTTAACAGAGCTCTGTGTGTGCGTGCGTGTGTGTGTGTGTTTTG TTTATTCGGCTGCTTGCTGATGTCTTCTTGAGCGCCGCTTTTGACAGGTT GTGCACTCCTCTCATATCGCGCACGTGTAGATGCCACCCCCCGTTTAAAC GTCTTCGTCTTCTCTGCCGCGTCCTTTTGCCGTGGATTCGTTTTCCTTGC TCAGGACGTGTTGCGTCTTGCTCGTCTTCAACAGAGCCTGTGTTTGTGTG TGCATCTTGTGCTTTTTCGTTCGTATTTACTGTTTGATTTTACCTGCTTG CTTGCGTCTACTAAGCGCCCCCCCCGACAGCTTGCGAGCCCCTGTTGCTC ATGCGTGCGTAGGCACAGTTCCTTGTTGCACTTCGCCCTTTCGAACCTGC ACCGGCAACGGGACTTGTAGTCGATACTGTACATACGTGAACCTCGCACT AATCGATTGCGCCACGACCAACCATTTCTGGGCCGCCGTGTGTTCTCGTT CGATTGATTTCCTTGTTTTGTAACCGTCATTCATACGATGCGATGCGATG CGATGCGATGCGACGATCGATCGATCGATCGATGAAGTCGTGCGATGCTT CGAAGACTCGGACATCATCCACGTGGAGGGAAGCGTGGACCCCGTTCGCG ACATCGACATCATCAACATAGAGCTGGCATTGGCGGATATGGCACAGGTG GGAGGGCGGGTGGGCGGGCATGAGACGTGCAAAACAACACCCAGAGAAAC AAAGAACAGCACAACAGCGTGTGTTTGTGATGGGGGCTAGTCCTATACCA GTACCCCGCATACACGGTTGTCTTGACTGTTCATGTGGCTAATCCTATAC CTGGTACACCACATACCTGACTGCTGTCTACGTGGTGTATAGGATTAGCG CCACTGACAATGTGGTGTACAGGACTAGCCCGTATCACTAACAGCGTGAA TCCCCTCCTACTTTCGGCAGGAAATTTCCAGGAATTTTGGCTACCCCCGT TCATAGTCAGGGTGGGTACGCACAGCGTGAATACCCTCGCAGTTGCGGCA GGAAGGTCCGTTCGCCCCTGTGAATCAGTCCCTGTGCTCCTTTGGTGTCG AAAAATTCTCTTATTAGCCCTCGTGTATATATATATACTCCGAGTATATA TTAGTCCCGTCTTGGCTGGGGGGGGGGGGCACTTTTTGTATCGAAATGAT TCCTCGGACCCGCCCGCGAATTTGTATCGCCAACCTTGGCTGGGGGGTAC TTTTTTTTTTGTTGAAATTTCCAGGAAGTTGATCTCAGCACCCGAGTGAG TCAGTCCCGTCCTGGCTGCGGGGGGCTCCGTTGATGTTGGAAATTTCTCC CCGTACCCACCTGCAGGGTCACCGGCCGGCAAATACAGAGTTCGATTGCT TTCGGCTTGTCTCGTTTTTGGTCCAATTTTTTCACGGACCCTCTATCCGT CCGGATTCCTTGGTTACGGCAGCAATCATTTTATTTTTGTCGATACCGCG AGTGCCTGCCCCCCTCCCCCCCCCCCCCAACTACACACATACGAAATGCC TCCACTACCGATGTTTTTCGACGGATGATACAAAGGTGGAGAAACGTCTT CAGAAGGCCTCTCGAGACAAGAAGGCCACGGCGCCTGAAAAGTCTGGACT AGCCAAGCTCCTCAAGGCGCTAGAAGAAGGTGGGTGGTGTTGCACGCGAG TTTTGGCGTTTCGCGCTCCCGATGTGTACCATTTTGAAGGCGAGCGGACA GAGCAAAACAACGAAAACAACGAAACAATGCCAACCTGTTCCCCTCTTGT AGGTAACCTCCATAAATGTTGGTGGTCTCACGCAAGGTGGCAATCATATA GAGGTTGTTGTATGGAAAGTGCATACATGTCATAGCTTTGTTGTACCACA TGTGAACTTTTTTAAGAAACGGCTCTCACACGTGTAGGGTATTATCGCAG CCAGCGGGACATCTTCCGCAGGCGGCGCTGGCTGACCTGTGGCGGAAGGC GTCTGCTTCGTCGAAGCGAAAACCGCTCGGGCATCCTCCGCAATGTCGCA CGCGCCAGAGTGTTGTTGCGCTGTGTCGACTGTCGACTGTTTTTGTTACC GTAGATGTTGGACTGCTGCTGTGTGCTGCTTTCCACCAGCACCATGTAGT TTGTGTTTGGGTTCGTTTATGTGGGTCACTGTGTTTGTTTGTATGTCGGG GAAGCCCGTGCGCGTGTGCGTGTGAGTGATTCGTTCGCCTTCTTGTTTTT GTTTTGAACAGGCCAGCCGGTGCGAACGGTGGAGCTGACAGAAGACGAGG CCAAGGACACGGCCTACCTGGGTCTCTTGACAGCCAAGAAGGTGTTTATG TCGTGGGTTGATATCATGCGGGAGCACGTATGTAGCACAGTACCACTGAG AGTGGCTGGGATGATGTGAGATACCCGTGGTGTAGTAGTAGCATTTGTTA CAACAGGTAAGTTTTCCGACTGTGTGGGTGGATGTGTATAATTCAATACT ACGGCTGTGTGTATATTTCTTCATTGTGTGTTCTTCACTGTCGTGTATTT TGCACCACAGAGTACGTTCTTTTTTCTCTGTTGTGTATTTATCGTTTTTG TGTTTTCTGCACGTGTATTCGTTGTTCTACATTTTCGTTGTTGTGTGCCT TTCGTTGAAGCGTACTTTTTTTTTTCTGTAAATTTAACCTGAAATTTAGT TGTTGGGCGTTTGAAATTACGAATGGTGTGGAAGGATTTACTTTGAACTT CTTGTGTGAATTTCCTTTTTCAGAATGTCAGATTCCGATGGGTCCGTCCT GATTGACTGTTGATCAATTGTTGGTGTGTCTTGTAGTCAGCGCTGTCTTC TGGTCGAAGATGTAGTTCCCATCGGCATAGCTTTAACGATCTACGCGCGC GGCGCTTAGCGACAACATAAAGATGGAGTTCTGAAAACGGCTACAAGTAT ACTGCTGTCGGTTCTGGTAGCTTATATCTCTGTCTCGTGAACACATTTTA ATTTTCCAAGTAGAACACGTGATGTACGCGTTCCATGCGGGGCACAAGTA TCTTCTTGCCGTTGTTGCTGCCACGTACCAACGGTCCATCGCCGTGGTCT GCACATGCAAATCCATTGCGGTCTGCACATTTCCACGACCTCGATATTTC CGTGCTGCTCCAACGGGTGAGAGATTTATTTCCCTCCGTGACCAACAGGC CCAACAACCAAAACGTGCGAGGGAGGAAAACAACTCCTCTCGATCGCAGA AAGCGTGGGATAGCCGCAGAAGATTCGGGTTCTGAAAACGGCGGCGCCGT ACTGGACTGTCGTGAGATAGCTTTTGATTTTATGTTTTTATTCCCATGGC TTCGTGTTGTTATTTCTGTATTTTTTGTCAGTTTTTATTCTTTGGTGCCA CCTGCACGCGACGTATTTTCAGAGTATCATATACTCGATACGTACGTGCA CCCCTGCGTACTTCCCCCCCTCGATAAAAAGGTGATCTACGCGTGCAACG TGGCGGACACGGACCTCGCCGACGGCAACAAAATGGTTGACGACGTGAGA AAATTCGCGGAGGATGAGGGGTCAAGGGTGGTCGTCGTGTCCGCGCAGGT GGAGTCGGAACTGGTGGATTTGGATGGGGACGACAAGCAAGAGTTCCTCG AGTCCTTGGGTAAGGAGTCTACGTAACAAGGTGGTTAGATGACGGGGTGG CGTTTGTTTATATCGTGTCATACGCGCGGCGAAGGGCGCTCTTTTTCCTT TTTCCTTTTTCCTTTTTGTTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCT TTTCCTTTTTCTTTTCCTTTTTCTTTTTCTTTTTCTTTTCTTTTTTCTAT TTTCTTTTTCAGGCTCTCATTTTCTTTTCCCCTGTGTTCCCCACTTGCCG AGCTTTCGTCAGTGTCGTAAGGTCTCTTTCGGTGCATGCATTCTTGCCGA ACTGTTACTGGGTTGTGGTCGCTTCGGGGCATTCCTAGCACGGCCGCAGT AGTAGTGTCGACCCTACAGTTACGTATATCGAACCAGAAGAATCCTCGAC CGGAGACGGGGCGGGCTCAGGGGCGCACATCTGTTTTTGCAGTACCCCCT TTGTCCTTCCAACCACCCAACTGTGGTGAAAGGCGGGTACTGGACCCTGT ACCCTGCTTCGGGGCCGACTTGCAGAGAGAGGCCGTGTACACCAACGAAA ATAATCCGAGAGTAATTTCCCGATGTGGCATATGTGCGGGGTGGGACGCA AAGTAAGTGAGCAAGCTTTTCCCTCATCACAGGCGTGGAACCGCCATGTG TGTGCTGCCGTGATGAGTGAACTACGACAGAAATGCCGCGATGAACTGCG ACAGAAATATACTCTGGCGATGAACTACTACAGACCGCGCGATGAACCGC CCCCGGTCACAACATTTTTGGGTCTGGAATACGTGTCACCTGGGGTTGCT TCTTGTAGGTGTTAAAGGGGTGCGTTGTCTAAATCTAAAGGGGGGGGGGG GAGGGGTTGTCATGCGATCTACCGTGCTGCTGTTTTGTGATCCCACGCAA ATACTGTTACTACTGCTGTATCGTGCGCTCCACGTCGTTCACCACTGCTC AGAGAGAGGCGTGCTTCTTCCGCTCGGCATGGCTCACGCCAACACCGTGT TGCCGTAATTTTTGACACGCTGTCTTGTGGGAGCTAAATTAATTTCGTTC CTGTTGCCCCCCCCCCTCTTTTTTTTGCTCTGCCCCTTCAATCAATCAAT CGATCAATCAAACAATCAATCAACCAACCAAGGCGTCTCCGAAGAGACGT GCGGGCTGCGAGCGTTGGTGAGAGAGGCGTACACCGCTCTAGGGCTGCAG ACGTACTTCACGTCCGGGGAGACGGAGACGAAGGCGTGGACCATCTACTC CGGGTGGACGGCCCCCCAGGCGGCAGGAGTCATTCACAGCGATTTCGAGA GGTGGGTGCGCTGAACTCCGAACTCAGTTCTATCTCTTGGGAGGGCGTTC GCGGTTTATTTGTCGCCCCGAAGACGTGGTTTCCCCCTTTACCGTTGCTC CTACCCTCGGCAGGGCTGTGGGGAGTCAGGCACAGTTAGTACCAACGGCA CCTCAAATAATGCTTGGTTGGCCATTACTCCTGCTGGATACTTACGGCGA TTAAGAGAGGTGCCCAAACGCCAGCCACCACACCTCGAATGCCGCAAAGA TAATTACGCAATACACGTGATGGGCGTAGAGTATGATACAGCCGAATCGC TCAAGAAAATGTTACAGTAGGCGCCCCTGCCACGGTTGTACTACGGCTCA TCATGGTGGAGACACAGCAGTTTCAAGGCGGAACACCAAAGCGGGGCTAA AGCCATCCACCCCCCCCGATCTACCTCATCTCAAGTTAACACCTCCGCTT AATTTAGTTGTCTTTGTGTTTCGGGTTTCGTGTGAAAAAATTATTGAGGG CACGCCACACTCCACGGTGGACTGCAATCTGCTGGGGGAATGGTGCAAAG GGGGGCAGCTACTTACACTTTGCTAGAGGGTCTTCAGAACTATGGCGTCT TCACGGCCTCTGATCGGCCAACCTCGCGTGTGCCTGAAACACACCACGTT CTGTCCTGCAGACCACCGGCGTTACACGACCGCGGCGTAGCCAAGGTCCT TGGCCACCACGGCCCGCCGTTGGACGGTTGTGAGGGTTAGGGTTAGGGTT GGGATTGGGTTGGGTTGAATCGGGCTGGCGTGTGCAACATGGTTATTGTG AGGAGCTCAAATTCAACATATGTATATACACCAATGTAGTTCGAAAGATT ATTTTTAACATGCAAACAGATGCGTGTGGGGGGGGGTCACTTGTACTGTG AGCAATACTGCTGTGGGCATGGGATCGGTTTAATTTTTGTTGTTTCTTTT TTTATCCGGCAGGGGTTTCATTCGCGCGGAGGCGATCAAGTACGAGGATC TCGTGGAGTGCGGCAGCGAAAAGGCGGCCAAGGAGAAGGGCTTGCTGAGG AGCGAGGGCAAGGAGTACGTCGTTCAAGAAGGGGACGTGCTCCACTTCCG CTTCAACGTCTCCAAGTAAAAGGCAATAGCGAGGTTATCCTGGCCACCGC CATTTTTTTTTTTTCACGTTTTGCTTATCGCAATCAGCGTATATGAAAGC CCGTGGTCGCAATACGTGGAGCGGGCTCTAGGAAAGTACTGCGGTGTGTT AAGGATGGAACCTGGTAGTTTTGAATCCCGTGGATATTTCCTGCTGAATG CCATTGCGGCACAACGACGGGGCTCAGTGCCTGTCTGAACCAATTATATG ATCCCAGATTTGTTTTTACAGAAATGAGGGGGTGTGCGAAACAACAATTA AGTGCGGAGCAATAAAGTGAGCGCGTGCTGGTTGGTCCTTCGCGGAGAAC GTGGGCGTTCAGAACGCAGTGTTTTGTTAGCAGCAGCACTGCCCTTCCCT CCGCGCTCGTCGTGTGCCACTTCTCAAAGGAGATGGATGGACCGATTTGG GGGTGTCCCAAATATACCCATTTTCATACCCCCAAAAATAAACAAAGAAA TTTATACTCCGGAGTATTTTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig19:280807..289778+

>mRNA_P-littoralis_Contig19.43.1 ID=mRNA_P-littoralis_Contig19.43.1|Name=mRNA_P-littoralis_Contig19.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1251bp|location=Sequence derived from alignment at P-littoralis_Contig19:280807..289778+ (Pylaiella littoralis U1_48)
ATGTTGATGCGTTGTATGGCTGGAACGATGCTCCTCGCTGGAGCTCGAAC
GCTCGCTTTCCGCCCGCCGTCAACCATCTGGGGCGTCAAAGTGGCCGGTC
AGGCCGCCATGCGCAACAGACAGGTGGGATCGCCGGTCCGCTCTAGCTCG
ACGATGAAGCTCAAGACTGGGATCGTGGGGATGCCGAACGTCGGAAAGTC
GACTCTGTTCAACGCGGTCACGGAGGCGCAGGGGGCCATGTGCGCCAACT
ACCCGTTCGCGACGATCGAGCCCAACATCGGGGTGGTGGAGGTCCCCGAC
GGAAGGCTCAAGGTTCTGTCCGAGATCAACAAGTCGGTCAAGACAATACC
GAGCACGCTAGACTTCTACGATATCGCCGGGCTCGTCAAGGGAGCGAGCA
AGGGGGAGGGGCTAGGAAACCAGTTCCTGGCAAACATCCGGGAGTGCGAC
GCCATCGTCCACGTCGTGCGATGCTTCGAAGACTCGGACATCATCCACGT
GGAGGGAAGCGTGGACCCCGTTCGCGACATCGACATCATCAACATAGAGC
TGGCATTGGCGGATATGGCACAGGTGGAGAAACGTCTTCAGAAGGCCTCT
CGAGACAAGAAGGCCACGGCGCCTGAAAAGTCTGGACTAGCCAAGCTCCT
CAAGGCGCTAGAAGAAGGCCAGCCGGTGCGAACGGTGGAGCTGACAGAAG
ACGAGGCCAAGGACACGGCCTACCTGGGTCTCTTGACAGCCAAGAAGGTG
ATCTACGCGTGCAACGTGGCGGACACGGACCTCGCCGACGGCAACAAAAT
GGTTGACGACGTGAGAAAATTCGCGGAGGATGAGGGGTCAAGGGTGGTCG
TCGTGTCCGCGCAGGTGGAGTCGGAACTGGTGGATTTGGATGGGGACGAC
AAGCAAGAGTTCCTCGAGTCCTTGGGCGTCTCCGAAGAGACGTGCGGGCT
GCGAGCGTTGGTGAGAGAGGCGTACACCGCTCTAGGGCTGCAGACGTACT
TCACGTCCGGGGAGACGGAGACGAAGGCGTGGACCATCTACTCCGGGTGG
ACGGCCCCCCAGGCGGCAGGAGTCATTCACAGCGATTTCGAGAGGGGTTT
CATTCGCGCGGAGGCGATCAAGTACGAGGATCTCGTGGAGTGCGGCAGCG
AAAAGGCGGCCAAGGAGAAGGGCTTGCTGAGGAGCGAGGGCAAGGAGTAC
GTCGTTCAAGAAGGGGACGTGCTCCACTTCCGCTTCAACGTCTCCAAGTA
A
back to top