prot_P-littoralis_Contig19.30.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig19.30.2
Unique Nameprot_P-littoralis_Contig19.30.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length1539
Homology
BLAST of mRNA_P-littoralis_Contig19.30.2 vs. uniprot
Match: A0A6H5JST5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST5_9PHAE)

HSP 1 Score: 634 bits (1635), Expect = 9.760e-196
Identity = 625/1503 (41.58%), Postives = 725/1503 (48.24%), Query Frame = 0
Query:  106 SVMRQRXXXNDDDAGDCAETASSQAEGADQDSALAGALRAPRR-GTGVPRDTQVSKEPAEDAAPTAVPGEGRGS---GLAHNSVERAAEGKGEDWGGQSEGMFRKRVSFELKAMLALNGGTCTMQALAATFKRHRHRLLNLQGKKLRVLLTTGSGLYGIGLYGTGQDAIIKLEDNRAAMSDNSVPPTDPDSVGRQSGTKHLTRTFVNPDALRN-GESPRGRSAAHEPGNEGRGSSYDRPGHKTRNGDRRNSPREALRSTPAALGSRNTLGYANTLAEPALRRGRSRS-----LGRXXXXXXXXHGPHAAASRGAAGDGWTERAEGGSGWGGHFRQGYRRARSPSDHKRFSHTARRDSPRRRSSPPLRR-GRSPS-----PRSSRGLNR---------NRR------MSHSRSPRXXXXXXXXXXSPRXXXXXXXXXXXXXXXXXXXRRSRADSKDKPSATRXXXXXXXX-------DRGSPSPAAKGRR--VAEERSAKVAEDGDAXXXXXXXXXXXXHHGRQQGSERVPPRDYRAGSSAAGGVEPVGYAAKAIHGAPREAARAPENGRGAVVVEPAVGMRMIDPIIPLALGGAPIPPVAAVP--------------------------GTRLLMEGAAGGGGGFPARDGPPTKHYHTATG--NGDEGYPVGNGGMPRG-WPRRDGGGIQEGGGGGL--LAPNLAPAMLPPLSSLRPLPLPAGCAQGARLMIKGTHPAVPERRIHALVSTFGIVGKIEVLEGFVFVHMKSIEEALRAVAGLNGKIVPHVSPQVNNHAGPPPPHLVAAIWREEHYLALMSKENMRAYADTMRKASTWYERQTKSGFMDTRGERMPCRFFALGRGCIFGNACGFSHESGPPPYPRGPANTHGSAGGLGFDQPLPKPQRLLPNPAFEPGPDARAGVPPLSYRQERIPVLALHGQSPTLTFVHRDETDSRPGHGPQGGHKP----AYAGNAVGVAMPWQPEHGAGTSGASLADRTSPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHGPRRTFAAARANAPEGN-QNTRRSGYHDSSRGHEGSTNGDRGXXXXXXXXXXSRRE-GSRTGSEKRSPRSVQHGRSRSRERGGRRDRESSXXXXXXXXXXXXSGGFEKSGGSRVRRSKSHESTADRGSRKHRRENAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQYRASRSSSRGRRLRDDSGDRHXXXXXXXXXTHRND---------------------RSRGSVSPVGKERRDRGSLDRSRVKARRYGNGSDDSDADGRRAKNVRHERVNGRGDSRNRGRREEIEEERDSFLGRGGDSNGRREDMSVNHGWVSLANDPGGFSREGQRQGFGVSPP-----RVGGSAPLRDDTHQLDDLDGQFGVGEWSDGFMKPEV---PARPVKTQFTVTARLGSLQ-PPPVPGPAASRRSTTKFSITMPPSMTGALVGPTSPPGGGVRRGGR 1501
            +V +Q      D A   +E  S++ EG D D AL+GAL APR  G   P     S EPA +A    + G+       G+    VE  A  K EDWGGQSEGMFRKRVS ELKAML   GG C M ++A  FKR   R+LNLQGKKLR LLTTGSGLYGIGLYG GQD  I+LE+  A    NS   T P+SVG +  T+ LTRTFVN  ALRN G   RGRS        GRG + D P      G   +S    +R T   LG  N++G   +  +      RSR      +GR     XXX               W +   GG       R  +  +RS    ++ S TA R SP  R SP  RR GR PS     PR SRG  R         +RR       SHSRSPR       XXX     XXXXXXXXXXXXX    R  R DS  KP  T                  GS  PAA+  R  ++   S++ A    +              GRQ G      R  R+ S        VGY  + + G P EA +  ENGR AV    AVG + +DP+IPLALGG   PPVA                             GTR L+EG  G GGGFP+    P K      G      GY  GNG    G W   DGGG  + G G L    P+ APA+LPP  SLRPLP     AQGARLMIKGTHPAVPERRIHALVSTFG+VGKIEVLEGFVFVHMKS+EEA RAV GLNG++VPHVSPQ  + AG  P  L AAIWREE Y ALMS+ENMR YAD+MR+ASTWYE+QTKSGF DT G+ MPCRFF+LGRGCIFGN CGFSHE  P  +PR  A+TH  AGG GF   LPKP  ++P+ A  P   +R GV P    Q R+ +LA H QSPTLTFVHRDE   R G G Q   KP    AY  + VGVAMPWQPEH  G   A       P                              ++G  R  + A    P  N  NTRRSGY   S  H    NG  G          S+R+ G R      S R    GR+  RE     D   S            +         R R S SH S+  RGS      +                                                 +Q R SRS++R R  RD      XXXXXXXXX                          RSR   SPVGK R                   S DS  DGRR+K  R+ER   RG   +R        ER  F GR G   GRR    V+HGW S A++PG FSR+   + +G +P         G  P R+  +  D      G   W D  +K E    P RPVKTQFTVTARLGSLQ PPPV  PA +   +T+FSITMP ++TGAL GPTSP  GGVRRGGR
Sbjct:  143 AVKQQEEGNARDSAKTLSERGSAEGEG-DLDDALSGALCAPRNVGNPAPGAAVASDEPAGNAFTEGMAGKEVSKPKVGITVGRVEVEAGRKQEDWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRRHKRVLNLQGKKLRALLTTGSGLYGIGLYGHGQDGEIRLEEKSAVKDSNSDAATGPNSVGDRGSTQPLTRTFVNHSALRNQGSRSRGRSPW------GRGGTCDEPDQGPPGGAGHSSRSAIVRPTLDPLG--NSVGSMRSRPDAVGAPTRSRMDGDARVGRGEWSRXXXXXXXXXXXXXXXS--WDKGVSGGHRKDESLRPTHGASRSSPSVRKSSRTAGRLSPHERHSPQQRRRGRIPSSRESSPRGSRGECRGTIPRRRSSSRRNSGKWHRSHSRSPRRSPCRRGXXXX----XXXXXXXXXXXXXSPPRRVGRHDSA-KPGPTNRSCGDHLNVSFDPRGTHGSTRPAARRDRDMLSHAVSSRKATRERSLERPEPDGMRPGDGGRQGGCIGASRRRGRSASL-------VGYVTEPLRGTPEEARKGQENGRSAVG-RGAVGGQTMDPVIPLALGGTRAPPVAGAARGRPXXXXXXXXXXXXXXXXXXXXSSGTRCLVEGTVGSGGGFPSNFDLPRKLNDAGAGPTGSAGGYSEGNGRPMAGDWLIGDGGGGSQEGVGQLRRFPPHPAPALLPPHFSLRPLPPMLVRAQGARLMIKGTHPAVPERRIHALVSTFGVVGKIEVLEGFVFVHMKSLEEATRAVTGLNGEVVPHVSPQATDRAGAAPLPLAAAIWREEQYQALMSRENMRIYADSMRRASTWYEKQTKSGFNDTLGKAMPCRFFSLGRGCIFGNNCGFSHEQRPR-HPRAAASTHEGAGGPGFAARLPKPPSVIPSRAVAPTLSSRTGVEPNPSGQGRVSLLAHHEQSPTLTFVHRDEMHRRSGPGAQEDLKPDPTGAYTASGVGVAMPWQPEHEVGVISAVGQVLPQP-GATSDRNVDRQEHARGGTSSQAFPSPPALRNGAGRMRSPA---TPTTNLDNTRRSGYQYESHSHR--ANGRGGGGCRDSGGGDSKRDRGGRNSGGSSSWREEPLGRNSDREHN---DSRRSSPVSSRGRSRRDASPISAHAXKRGRGSSSHRSSPPRGSGGFENNDE-----RVSRSSRKAVQQPGRGHSGSPRRESLESVPGRGSRGHHLDRRSRQCRDSRSTNRPRSRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSRDCASPVGKARXXXXXXXXXXXXXXXXSE-SGDSKLDGRRSKKSRNERETSRGRGSDRXXXXXXGGERGMFSGRRG--GGRRGSDDVSHGWSSPADNPGAFSRDDHSRSYGGAPRGDLYNAGSGGVPRREGRYVADCSSSPNGSAGW-DSMVKEEFMEDPPRPVKTQFTVTARLGSLQQPPPVSAPAGADNPSTRFSITMPSNITGAL-GPTSP-SGGVRRGGR 1600          
BLAST of mRNA_P-littoralis_Contig19.30.2 vs. uniprot
Match: D7G6Q3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q3_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.180e-16
Identity = 68/149 (45.64%), Postives = 82/149 (55.03%), Query Frame = 0
Query:  103 PTRSVMRQRXXXNDDDAGDCAETASSQAEGADQDSALAGALRAPRR-GTGVPRDTQVSKEPAEDAAPTAVPGEG---RGSGLAHNSVERAAEGKGEDWGGQSEGMFRKRVSFELKAMLALNGGTCTMQALAATFKRHRHRLLNLQGKKL 247
            P  +  +Q      D A   +E  S++ EG D D AL+GAL APR  G   P     S EPA DA+   + G+       G+    VE  A  K E WGGQSEGMFRKRVS ELKAML   GG C M ++A  FKR   R +NLQGKK+
Sbjct:  116 PAVAGKQQEEENARDSAETLSERGSAEGEG-DLDDALSGALCAPRNVGNPPPGAAVASGEPAGDASTEGMAGKDVLKPKVGITAGRVEVEAGRKQEYWGGQSEGMFRKRVSEELKAMLRSCGGRCEMSSIAKLFKRRHKRAMNLQGKKV 263          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.30.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JST5_9PHAE9.760e-19641.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q3_ECTSI2.180e-1645.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 763..828
e-value: 0.0083
score: 25.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 764..821
e-value: 8.3E-5
score: 22.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 762..820
score: 9.336864
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 762..826
e-value: 3.5E-7
score: 32.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 913..957
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1201..1217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..594
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1434..1538
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1231..1245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..401
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..458
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..606
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1386..1415
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1257..1369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1025..1045
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 281..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 978..1369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1116..1154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1174..1194
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 883..911
score: 12.004529
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 755..828

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:190825..206243 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.30.2mRNA_P-littoralis_Contig19.30.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig19 187618..206556 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig19.30.2 ID=prot_P-littoralis_Contig19.30.2|Name=mRNA_P-littoralis_Contig19.30.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1539bp
MPLTQEELPSPIQTSDADLGSGPETAESLISGPQSANTEASVKTEVSIKP
ETSKAASGDDSGNRSASPSASLQGFLLTDSPRGTASCNGSGSDAAAAASA
SVPTRSVMRQREEENDDDAGDCAETASSQAEGADQDSALAGALRAPRRGT
GVPRDTQVSKEPAEDAAPTAVPGEGRGSGLAHNSVERAAEGKGEDWGGQS
EGMFRKRVSFELKAMLALNGGTCTMQALAATFKRHRHRLLNLQGKKLRVL
LTTGSGLYGIGLYGTGQDAIIKLEDNRAAMSDNSVPPTDPDSVGRQSGTK
HLTRTFVNPDALRNGESPRGRSAAHEPGNEGRGSSYDRPGHKTRNGDRRN
SPREALRSTPAALGSRNTLGYANTLAEPALRRGRSRSLGRHRSRSRSRHG
PHAAASRGAAGDGWTERAEGGSGWGGHFRQGYRRARSPSDHKRFSHTARR
DSPRRRSSPPLRRGRSPSPRSSRGLNRNRRMSHSRSPRRNSSPPNRRGSP
RRRGSSPKRSPQRSAEPGRSRRSRADSKDKPSATRGRNGSTRRDRGSPSP
AAKGRRVAEERSAKVAEDGDASTRRDNGARQAVHHGRQQGSERVPPRDYR
AGSSAAGGVEPVGYAAKAIHGAPREAARAPENGRGAVVVEPAVGMRMIDP
IIPLALGGAPIPPVAAVPGTRLLMEGAAGGGGGFPARDGPPTKHYHTATG
NGDEGYPVGNGGMPRGWPRRDGGGIQEGGGGGLLAPNLAPAMLPPLSSLR
PLPLPAGCAQGARLMIKGTHPAVPERRIHALVSTFGIVGKIEVLEGFVFV
HMKSIEEALRAVAGLNGKIVPHVSPQVNNHAGPPPPHLVAAIWREEHYLA
LMSKENMRAYADTMRKASTWYERQTKSGFMDTRGERMPCRFFALGRGCIF
GNACGFSHESGPPPYPRGPANTHGSAGGLGFDQPLPKPQRLLPNPAFEPG
PDARAGVPPLSYRQERIPVLALHGQSPTLTFVHRDETDSRPGHGPQGGHK
PAYAGNAVGVAMPWQPEHGAGTSGASLADRTSPHLGTSTGSMVDRGQPNI
GRDSSKVLGNSEPQHGPRRTFAAARANAPEGNQNTRRSGYHDSSRGHEGS
TNGDRGGGGGRGGDGGSRREGSRTGSEKRSPRSVQHGRSRSRERGGRRDR
ESSPVSSRSGSPRRSSGGFEKSGGSRVRRSKSHESTADRGSRKHRRENAG
RRSKSHESAADRGSRKRPRNSGGRRSKSHVGATDRRSRKHGRDSRGRQQY
RASRSSSRGRRLRDDSGDRHGRSSARRDRTHRNDRSRGSVSPVGKERRDR
GSLDRSRVKARRYGNGSDDSDADGRRAKNVRHERVNGRGDSRNRGRREEI
EEERDSFLGRGGDSNGRREDMSVNHGWVSLANDPGGFSREGQRQGFGVSP
PRVGGSAPLRDDTHQLDDLDGQFGVGEWSDGFMKPEVPARPVKTQFTVTA
RLGSLQPPPVPGPAASRRSTTKFSITMPPSMTGALVGPTSPPGGGVRRGG
RPARGRGRGGRVGNQRDTGGRRSSGGPQYDNAGYNHFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000571Znf_CCCH
IPR035979RBD_domain_sf