mRNA_P-littoralis_Contig19.145.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.145.1
Unique NamemRNA_P-littoralis_Contig19.145.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:676001..676403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size403
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.9626412-UTR-P-littoralis_Contig19:676000..6760221680789905.9626412-UTR-P-littoralis_Contig19:676000..676022Pylaiella littoralis U1_48UTRP-littoralis_Contig19 676001..676022 +
1680789905.9869564-UTR-P-littoralis_Contig19:676352..6764031680789905.9869564-UTR-P-littoralis_Contig19:676352..676403Pylaiella littoralis U1_48UTRP-littoralis_Contig19 676353..676403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.975061-CDS-P-littoralis_Contig19:676022..6763521680789905.975061-CDS-P-littoralis_Contig19:676022..676352Pylaiella littoralis U1_48CDSP-littoralis_Contig19 676023..676352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.145.1prot_P-littoralis_Contig19.145.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 676023..676352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.145.1

>prot_P-littoralis_Contig19.145.1 ID=prot_P-littoralis_Contig19.145.1|Name=mRNA_P-littoralis_Contig19.145.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MAAYSVSGGVMSYFLSVIVDLVRVAGCSLGVIGNVGRDDAAAQPAGHEKN
FFLQAIGTVESRFPYFDGILRPAGMAIVLVTRKHRLGNCRVFGVIFCCSW
SENLGMMHA*
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mRNA from alignment at P-littoralis_Contig19:676001..676403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.145.1 ID=mRNA_P-littoralis_Contig19.145.1|Name=mRNA_P-littoralis_Contig19.145.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=403bp|location=Sequence derived from alignment at P-littoralis_Contig19:676001..676403+ (Pylaiella littoralis U1_48)
CTATCCATCCTTTGTTGTTGGTATGGCAGCCTATAGTGTAAGCGGTGGTG
TCATGTCCTATTTTCTATCGGTAATCGTAGACCTTGTGCGTGTTGCGGGA
TGTTCTCTCGGAGTCATCGGAAACGTTGGCCGTGACGATGCAGCAGCCCA
ACCGGCGGGTCACGAGAAGAACTTTTTTCTACAGGCAATTGGCACGGTGG
AAAGTCGGTTCCCTTACTTTGATGGAATATTAAGGCCAGCCGGTATGGCG
ATCGTGTTGGTGACACGAAAGCACCGGCTGGGCAATTGCAGAGTGTTTGG
TGTGATTTTTTGTTGCAGTTGGAGCGAAAATCTGGGAATGATGCATGCGT
GATCCCTGTTGTATGATACAAGGGCGATATATCATAGAATATGTCAAGGT
CGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:676001..676403+

>mRNA_P-littoralis_Contig19.145.1 ID=mRNA_P-littoralis_Contig19.145.1|Name=mRNA_P-littoralis_Contig19.145.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig19:676001..676403+ (Pylaiella littoralis U1_48)
ATGGCAGCCTATAGTGTAAGCGGTGGTGTCATGTCCTATTTTCTATCGGT
AATCGTAGACCTTGTGCGTGTTGCGGGATGTTCTCTCGGAGTCATCGGAA
ACGTTGGCCGTGACGATGCAGCAGCCCAACCGGCGGGTCACGAGAAGAAC
TTTTTTCTACAGGCAATTGGCACGGTGGAAAGTCGGTTCCCTTACTTTGA
TGGAATATTAAGGCCAGCCGGTATGGCGATCGTGTTGGTGACACGAAAGC
ACCGGCTGGGCAATTGCAGAGTGTTTGGTGTGATTTTTTGTTGCAGTTGG
AGCGAAAATCTGGGAATGATGCATGCGTGA
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