mRNA_P-littoralis_Contig19.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.87.1
Unique NamemRNA_P-littoralis_Contig19.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:424206..424957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size754
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.8818047-UTR-P-littoralis_Contig19:424205..4244051680789905.8818047-UTR-P-littoralis_Contig19:424205..424405Pylaiella littoralis U1_48UTRP-littoralis_Contig19 424206..424405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.893551-CDS-P-littoralis_Contig19:424405..4249571680789905.893551-CDS-P-littoralis_Contig19:424405..424957Pylaiella littoralis U1_48CDSP-littoralis_Contig19 424406..424957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.87.1prot_P-littoralis_Contig19.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 424406..424957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.87.1

>prot_P-littoralis_Contig19.87.1 ID=prot_P-littoralis_Contig19.87.1|Name=mRNA_P-littoralis_Contig19.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp
MSRCAPPASDVLWLGVPLTRSKEGAGNDASGCISGACTQQHFMFSCCWRV
RRYIRPRVYAGAARDRFLWYWSGCGGRDQTSTVTSTIEEGKLRIRLFCSN
CNTGFSDRFVHVSSHSVSSQCLTAYLTFPSHRHAPPLGVPRLLSVDCNPL
RPRRVRKNLIYSRGGGGNLAQNLSPSIGCARCIT
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mRNA from alignment at P-littoralis_Contig19:424206..424957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.87.1 ID=mRNA_P-littoralis_Contig19.87.1|Name=mRNA_P-littoralis_Contig19.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=752bp|location=Sequence derived from alignment at P-littoralis_Contig19:424206..424957+ (Pylaiella littoralis U1_48)
GGCGCCGCCACGTGCAAGCGGCAGTTGTAAGTAGTGGTCGTGTAAGGTGT
TGACGTTGGGTCGGACCCCCCAGCAACTTACGCTCCTCGTGTCCTTTTTC
TTGTGGTATATTTGCTGCTTTCGCGATTGCGGCGGCTCGGTGACGGACGG
GAGGGGGGTTGGGGGGGGGGGAGGGGCGGCGGCGGCGCACCAAAGGAATA
ATGTCAAGATGTGCTCCACCAGCAAGCGATGTTCTTTGGTTGGGTGTTCC
GTTGACCCGATCGAAAGAGGGTGCGGGAAATGACGCGTCCGGGTGCATCA
GTGGGGCATGTACGCAGCAGCACTTCATGTTTAGTTGCTGTTGGCGAGTT
CGCCGCTACATCAGGCCTCGTGTGTATGCCGGTGCTGCAAGGGATCGATT
TCTTTGGTATTGGTCAGGCTGTGGTGGGAGGGATCAAACATCGACCGTGA
CATCAACAATCGAAGAAGGAAAACTAAGAATCCGTTTATTTTGCAGCAAC
TGCAACACTGGATTTAGTGATAGATTCGTTCATGTATCATCTCATTCTGT
ATCATCTCAATGTTTGACGGCATACCTTACATTCCCGAGTCATCGGCATG
CCCCGCCTCTTGGTGTTCCAAGGCTTCTCTCGGTAGACTGCAATCCCCTC
CGCCCCCGACGTGTGAGGAAAAACTTGATATATTCCCGGGGAGGCGGGGG
TAACCTGGCACAAAATCTATCTCCAAGTATAGGGTGTGCCCGATGCATTA
CC
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:424206..424957+

>mRNA_P-littoralis_Contig19.87.1 ID=mRNA_P-littoralis_Contig19.87.1|Name=mRNA_P-littoralis_Contig19.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig19:424206..424957+ (Pylaiella littoralis U1_48)
ATGTCAAGATGTGCTCCACCAGCAAGCGATGTTCTTTGGTTGGGTGTTCC
GTTGACCCGATCGAAAGAGGGTGCGGGAAATGACGCGTCCGGGTGCATCA
GTGGGGCATGTACGCAGCAGCACTTCATGTTTAGTTGCTGTTGGCGAGTT
CGCCGCTACATCAGGCCTCGTGTGTATGCCGGTGCTGCAAGGGATCGATT
TCTTTGGTATTGGTCAGGCTGTGGTGGGAGGGATCAAACATCGACCGTGA
CATCAACAATCGAAGAAGGAAAACTAAGAATCCGTTTATTTTGCAGCAAC
TGCAACACTGGATTTAGTGATAGATTCGTTCATGTATCATCTCATTCTGT
ATCATCTCAATGTTTGACGGCATACCTTACATTCCCGAGTCATCGGCATG
CCCCGCCTCTTGGTGTTCCAAGGCTTCTCTCGGTAGACTGCAATCCCCTC
CGCCCCCGACGTGTGAGGAAAAACTTGATATATTCCCGGGGAGGCGGGGG
TAACCTGGCACAAAATCTATCTCCAAGTATAGGGTGTGCCCGATGCATTA
CC
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