mRNA_P-littoralis_Contig19.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.84.1
Unique NamemRNA_P-littoralis_Contig19.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.84.1 vs. uniprot
Match: D7FLT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.640e-9
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 YLDKKLEAHLKLDWYNEQAVKSEARRQANQP 93
            YLD+KLEAHLKLDWYNEQAVKSEARRQANQP
Sbjct:   38 YLDRKLEAHLKLDWYNEQAVKSEARRQANQP 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT4_ECTSI2.640e-996.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:420878..421316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size439
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.8288789-CDS-P-littoralis_Contig19:420877..4212101680789905.8288789-CDS-P-littoralis_Contig19:420877..421210Pylaiella littoralis U1_48CDSP-littoralis_Contig19 420878..421210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.8443387-UTR-P-littoralis_Contig19:421210..4213161680789905.8443387-UTR-P-littoralis_Contig19:421210..421316Pylaiella littoralis U1_48UTRP-littoralis_Contig19 421211..421316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.84.1prot_P-littoralis_Contig19.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 420878..421210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.84.1

>prot_P-littoralis_Contig19.84.1 ID=prot_P-littoralis_Contig19.84.1|Name=mRNA_P-littoralis_Contig19.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
YLDKKLEAHLKLDWYNEQAVKSEARRQANQPVSEEQRRFYSTWFHSSAPP
QTLLPYNVIVGPDKFRHAAAVQYVHNLGLFTEVVSSLFSEGTNRSAATAT
SVLNEDGVFF*
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mRNA from alignment at P-littoralis_Contig19:420878..421316+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.84.1 ID=mRNA_P-littoralis_Contig19.84.1|Name=mRNA_P-littoralis_Contig19.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=439bp|location=Sequence derived from alignment at P-littoralis_Contig19:420878..421316+ (Pylaiella littoralis U1_48)
TATCTCGACAAGAAGCTGGAAGCTCACCTGAAGTTGGACTGGTACAACGA
GCAGGCGGTCAAGAGCGAGGCGCGCCGTCAGGCTAACCAGCCGGTGAGTG
AGGAACAGCGACGGTTTTATAGTACATGGTTTCACTCCTCCGCACCTCCA
CAGACGTTACTGCCGTATAATGTGATTGTGGGTCCGGACAAATTCAGGCA
TGCTGCTGCTGTACAGTACGTGCATAATTTGGGTCTGTTTACTGAAGTTG
TTAGTTCGTTATTCAGTGAAGGGACAAACCGAAGTGCCGCAACTGCTACT
TCTGTTTTAAATGAAGACGGTGTTTTTTTTTAGTGACTTCCTGTCTGTCT
TGACCCCGACTGGTGCCCACCATAAATGGCGTGAAACACACGCACATACA
CACCGCAGAAAAGTACGTGAAGCAGGCTGTGTGATAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:420878..421316+

>mRNA_P-littoralis_Contig19.84.1 ID=mRNA_P-littoralis_Contig19.84.1|Name=mRNA_P-littoralis_Contig19.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig19:420878..421316+ (Pylaiella littoralis U1_48)
TATCTCGACAAGAAGCTGGAAGCTCACCTGAAGTTGGACTGGTACAACGA
GCAGGCGGTCAAGAGCGAGGCGCGCCGTCAGGCTAACCAGCCGGTGAGTG
AGGAACAGCGACGGTTTTATAGTACATGGTTTCACTCCTCCGCACCTCCA
CAGACGTTACTGCCGTATAATGTGATTGTGGGTCCGGACAAATTCAGGCA
TGCTGCTGCTGTACAGTACGTGCATAATTTGGGTCTGTTTACTGAAGTTG
TTAGTTCGTTATTCAGTGAAGGGACAAACCGAAGTGCCGCAACTGCTACT
TCTGTTTTAAATGAAGACGGTGTTTTTTTTTAG
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