mRNA_P-littoralis_Contig19.200.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.200.1
Unique NamemRNA_P-littoralis_Contig19.200.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:906734..907689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size480
Hectar predicted targeting categorysignal peptide
Exons3
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.52353-CDS-P-littoralis_Contig19:906733..9069011680789905.52353-CDS-P-littoralis_Contig19:906733..906901Pylaiella littoralis U1_48CDSP-littoralis_Contig19 906734..906901 +
1680789905.5381575-CDS-P-littoralis_Contig19:907118..9073891680789905.5381575-CDS-P-littoralis_Contig19:907118..907389Pylaiella littoralis U1_48CDSP-littoralis_Contig19 907119..907389 +
1680789905.5552878-CDS-P-littoralis_Contig19:907648..9076891680789905.5552878-CDS-P-littoralis_Contig19:907648..907689Pylaiella littoralis U1_48CDSP-littoralis_Contig19 907649..907689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.200.1prot_P-littoralis_Contig19.200.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 906734..907689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.200.1

>prot_P-littoralis_Contig19.200.1 ID=prot_P-littoralis_Contig19.200.1|Name=mRNA_P-littoralis_Contig19.200.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=160bp
MPRSPGVGSAMLLGRLLFAGWISLTSTGASGRQACAIVFLLSASKGIATA
KRSASEHCLPSPWRPRRNQIGSRCVGPVATSRALHVCPFLSWMGCSSAVR
RRVDSSQPRKLSTPPRRPPPLPPRHQQQRRPQKDHPGGVIPLLQPTVVPL
DPSNSAPPS*
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mRNA from alignment at P-littoralis_Contig19:906734..907689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.200.1 ID=mRNA_P-littoralis_Contig19.200.1|Name=mRNA_P-littoralis_Contig19.200.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=956bp|location=Sequence derived from alignment at P-littoralis_Contig19:906734..907689+ (Pylaiella littoralis U1_48)
ATGCCAAGATCACCGGGAGTGGGTTCAGCGATGTTGTTGGGGCGGCTGCT
TTTCGCGGGATGGATTTCGCTGACATCGACAGGCGCAAGTGGTCGACAGG
CCTGCGCCATTGTATTTCTGCTCTCGGCAAGCAAGGGTATAGCAACGGCC
AAGCGGTCTGCCTCAGAGGTACACAAGCGTAACATTGCGAGCACTTTCCT
GATTGCTTTCCTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGAAGATGACTGCGTCGA
GTGGGAGCAGTCAAGAAACCATTTCCTAATCGTAAGCCCTTCCTGTGTGC
CTCGCTGATGTGACACGTGTCTGTCGACGAACCAGCATTGTCTACCGAGC
CCGTGGCGCCCTCGGAGGAACCAGATCGGATCCCGATGTGTAGGCCCGGT
TGCGACATCGCGGGCTCTGCACGTCTGTCCTTTCCTGTCGTGGATGGGAT
GTTCGAGCGCCGTGCGGCGGCGAGTAGACTCGTCGCAGCCAAGAAAGCTG
TCGACGCCGCCAAGAAGACCGCCGCCGCTGCCGCCGCGACACCAGCAACA
GCGCCGCCCGCAGAAGGATCATCCCGGCGGCGTAATTCCGCTCCTGCAGC
CTACCGGTAAAGCCCCTTCGTTATTCCCATCCGCGATTTTTTTTTTACTT
GCGGCCATTCTCGAACGGCAAGCACATTTGTCTTGTCACTCTGTAGGTTT
AGAGCCATGCGGTAGGAATTAAATGCTCCCCTTTTACATGTCTTTTACAT
GAACCTTGACACGTCGCTATCATATTCGTGACTCGTGGATGCCAAGAGAG
CCGCCAATGTATGACAGCTATTCCTCGATGTCCGTTTGCGCGTCTGGTTG
CGTTTTTTTTTTCAGTAGTGCCACTGGACCCATCCAACTCGGCACCCCCC
TCATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:906734..907689+

>mRNA_P-littoralis_Contig19.200.1 ID=mRNA_P-littoralis_Contig19.200.1|Name=mRNA_P-littoralis_Contig19.200.1|organism=Pylaiella littoralis U1_48|type=CDS|length=480bp|location=Sequence derived from alignment at P-littoralis_Contig19:906734..907689+ (Pylaiella littoralis U1_48)
ATGCCAAGATCACCGGGAGTGGGTTCAGCGATGTTGTTGGGGCGGCTGCT
TTTCGCGGGATGGATTTCGCTGACATCGACAGGCGCAAGTGGTCGACAGG
CCTGCGCCATTGTATTTCTGCTCTCGGCAAGCAAGGGTATAGCAACGGCC
AAGCGGTCTGCCTCAGAGCATTGTCTACCGAGCCCGTGGCGCCCTCGGAG
GAACCAGATCGGATCCCGATGTGTAGGCCCGGTTGCGACATCGCGGGCTC
TGCACGTCTGTCCTTTCCTGTCGTGGATGGGATGTTCGAGCGCCGTGCGG
CGGCGAGTAGACTCGTCGCAGCCAAGAAAGCTGTCGACGCCGCCAAGAAG
ACCGCCGCCGCTGCCGCCGCGACACCAGCAACAGCGCCGCCCGCAGAAGG
ATCATCCCGGCGGCGTAATTCCGCTCCTGCAGCCTACCGTAGTGCCACTG
GACCCATCCAACTCGGCACCCCCCTCATAA
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