mRNA_P-littoralis_Contig19.118.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.118.1
Unique NamemRNA_P-littoralis_Contig19.118.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:508540..509230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.3816683-CDS-P-littoralis_Contig19:508539..5086221680789905.3816683-CDS-P-littoralis_Contig19:508539..508622Pylaiella littoralis U1_48CDSP-littoralis_Contig19 508540..508622 -
1680789905.3925683-CDS-P-littoralis_Contig19:509148..5092301680789905.3925683-CDS-P-littoralis_Contig19:509148..509230Pylaiella littoralis U1_48CDSP-littoralis_Contig19 509149..509230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.118.1prot_P-littoralis_Contig19.118.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 508540..509230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.118.1

>prot_P-littoralis_Contig19.118.1 ID=prot_P-littoralis_Contig19.118.1|Name=mRNA_P-littoralis_Contig19.118.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
FHPAVVKGAKEETGTKEERKAPIRAAVAGRESPEASGGTPQSSLLEYMSR
KMDKK
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mRNA from alignment at P-littoralis_Contig19:508540..509230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.118.1 ID=mRNA_P-littoralis_Contig19.118.1|Name=mRNA_P-littoralis_Contig19.118.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=691bp|location=Sequence derived from alignment at P-littoralis_Contig19:508540..509230- (Pylaiella littoralis U1_48)
TTTCACCCGGCCGTGGTCAAGGGTGCGAAGGAGGAGACAGGCACCAAGGA
GGAGAGGAAAGCACCAATTCGAGCGGCAGTTGGTGAGTCATATTACATTA
TTTAAGTATAATATTTATTATTTATTATTTATCACTTCGTATTTATTATT
TATTATGTATTGTATAGACTATTTACTACTCCGTATTCACTGTTTGTTTG
TTTTGTTTTCTATTTTCTATTTTTGCAACTGATTTTGGGCCGAAAAGACG
GAAAATGCTGTTGACTTGATTTTGTGATTTTGTATTGCCTTCCACAAAGC
AACTGAAAATAATTATTAAAATTTACACATATTATTGTTGTTTCTATTGT
CTCCCCCAAGAGAACACACATGTACGTATGTATGTACGAAGTGTGGTTTC
TTGTTTATGTCTATTGTCTCATTGTCTCCTACAAACGAAAAAATAATTTC
ATAAATTAAGTATTTTTTATTTTTTTCTCCCCAAACGAAAAAATAAAATA
AAAATAGTTGAATTAAATAAAAACTATATGAAACTTAAGATTAAAGCTAT
TTTTTTTTGTCTTTTTTGTTGTTTGTTTTTCTATTCTCTCTTGGTACCTT
TACGGCAGCGGGGCGTGAATCGCCGGAGGCGTCAGGAGGAACACCTCAGT
CGTCACTGCTAGAGTACATGTCACGGAAGATGGACAAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:508540..509230-

>mRNA_P-littoralis_Contig19.118.1 ID=mRNA_P-littoralis_Contig19.118.1|Name=mRNA_P-littoralis_Contig19.118.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig19:508540..509230- (Pylaiella littoralis U1_48)
TTTCACCCGGCCGTGGTCAAGGGTGCGAAGGAGGAGACAGGCACCAAGGA
GGAGAGGAAAGCACCAATTCGAGCGGCAGTTGCGGGGCGTGAATCGCCGG
AGGCGTCAGGAGGAACACCTCAGTCGTCACTGCTAGAGTACATGTCACGG
AAGATGGACAAGAAG
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