mRNA_P-littoralis_Contig19.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.2.1
Unique NamemRNA_P-littoralis_Contig19.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:2972..5065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.216757-CDS-P-littoralis_Contig19:2972..30081680789905.216757-CDS-P-littoralis_Contig19:2972..3008Pylaiella littoralis U1_48CDSP-littoralis_Contig19 2973..3008 -
1680789905.2265615-CDS-P-littoralis_Contig19:4777..50651680789905.2265615-CDS-P-littoralis_Contig19:4777..5065Pylaiella littoralis U1_48CDSP-littoralis_Contig19 4778..5065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.2.1prot_P-littoralis_Contig19.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 2973..5065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.2.1

>prot_P-littoralis_Contig19.2.1 ID=prot_P-littoralis_Contig19.2.1|Name=mRNA_P-littoralis_Contig19.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
GVGGGAAGPGLPPQAPGLGGAAGGPSDPAEVGSADGGGSAAAQGSRKRTL
AELHAAVDELSERQSLADGLGQPAERDAVATPPARRPMTYVSIPDKFKAS
WGTLLHKA
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mRNA from alignment at P-littoralis_Contig19:2972..5065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.2.1 ID=mRNA_P-littoralis_Contig19.2.1|Name=mRNA_P-littoralis_Contig19.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2094bp|location=Sequence derived from alignment at P-littoralis_Contig19:2972..5065- (Pylaiella littoralis U1_48)
GGCGTTGGAGGGGGTGCAGCAGGACCAGGCCTTCCGCCTCAGGCGCCAGG
GTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCCAGCGGAAGTTGGGAGCG
CCGATGGTGGCGGTTCGGCGGCAGCCCAGGGCTCCCGCAAACGCACCTTG
GCCGAACTTCACGCTGCCGTCGACGAATTATCTGAGCGGCAGAGCCTGGC
GGACGGACTTGGGCAACCAGCGGAACGAGATGCGGTGGCCACGCCCCCCG
CCCGGCGTCCCATGACCTACGTCTCAATTCCCGATAAGGTGAGATTTTAC
GTGTGTTTGGCTTTGTGTATCCGGACGACCCACTCCACTATCGCTCGCTC
CTTCGTCCCTCCCTCTCTGCTCTGCTCCCTCTCTTCGGTTACGTTCACCC
TTACCTCTTTCTGTTATGCTCTGTTCGGGTACCGAAAGAAGCAGAGCTCT
GGGATGTTCTGAGTTATCTGCAAGACCTGTTTTTCTGGTCTGTGTTTTCA
GTACTGCTGTTTGGTAGCTTCCTCAATTTGGCTCTGTGGGTCGTTCGGTT
GGCTCTCGTCTCCGTGTTTTTACACCATATTTCGTACGGAGTGTGATGCA
ACCATACATCATCCTTTCCCTTTGTGCATGCCCGTCCAAAGGTCATGCTT
GTGCCAGTCTACACCGTGCAGGTTAGGTCGTACTTCGAAATATATATGTA
CAGCAGACCTGCGTATCAGCACTTTTATTTATTTTTACTTTCTCTTCTTT
ATTCTCCTTGTGGTTGAGGAAAATACAGCGGACATGTGCGTCTCGGAACA
TTTTCGCAGCCATCTCTTTGCCCACATTCTGCAGGTTATGACTGTTTTGT
ATGCGTGTTTTTGTCCACTGGTGCTCTTGTTTTTGGGGATTGTTGACGTG
ACATCGCTCGCAGGTCGCACGGCCTTTGACCCTTTTTCTGTGGTAATGTC
CTCTTTGACAGCTATCTCCCTCTTCGCATAGTTTCGCACTGTTGCCAGAC
CTCGCCACCTAAAATCATCCTTTAAATAACGATGAACCTCTCTGTCTGTT
TCTGTCTTGGACAAAGGTATTTGCTTTCGCCAAGCTCTGCATTTTTCCTC
CTTCCGTGCTCCGGTTGAATTTTTTGACTCTGTCTTTCCAACTCTCTCTT
TCCAACCCGCGAGTTTTTCTCATTTCCTCTGCGAGTTTGTCCGTTCCGGC
TCAGTTCTGTTTAGTTACACGCTCGCCCACTCCAGCTTTGGTTTCCATTT
GCTTTTCCTGTTTCCCGTTCCGGCTCAGTTATGTTCAGTTACACGTTCAC
CCGCCCCAGCTCCGTTTCAGCCTGTTGCTCATGGCTTGGTTTTTCTCCTT
TCAGTTCCTGTTCCACCGTTCACGCTCAGTTTCGGTTTTTCGCTCTCGGC
TCGAGGCCCCGTTTGCTCCAGTTCCGTTTTCAGCCTATTGCTCACGGCTT
GGTTCCCGTTCCGTTCACGCTCAGCCGTTCCAGTTCAGTTTAAGCCTTGT
GCTCTTGGCTCGTTGCCTCTTTCGCTCCAGTGCCGTTTTTCGGCTTGTCG
CTCACAGCTTGGTTCCCTGTCAGTACACGCTCAGTTTCGGCTTGTCGCTC
TAGCCTGATTTTTTCCCGTTCAGTTCCCGCTCCACGAACACAGTTTCGAC
CTTTCGCTCTAGTTCAATTTTCGGCCTGTCGTTCACGGCTTGAGTTCCCG
CTCAGTACACGGTCATTTGCGGCCCGTCGCTCAGGGCTTAGCTATTTTAC
GTTCCATTAATGCTAACCACTTCACGCTCAGTTCGGCCTTTCGCCTTTGG
TTCGATGCCCCATTTACTCCAGTTTCGTTTTCGGCCTGTTTTCTCACGGC
TTGGTTCCCGGTTTCAGTTCCCGCGATGCCCGTTCACGCTCGTTTCGGCT
CAGTTCGCGCTCACAATTCTTCGCTCAGTTGACGCTCACCCGCTCCGGTT
CAGTTCGAGATTGTTCGCTCATTGCCGACCTTTGCATGGCGGCCCCTCTT
TCTTTCCGTTCCCATGCCCATTACTTTGACCGTCTTTCTGGTTCTGCTCC
GCTTTAGTTCAAAGCTTCGTGGGGTACCCTTCTGCACAAGGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:2972..5065-

>mRNA_P-littoralis_Contig19.2.1 ID=mRNA_P-littoralis_Contig19.2.1|Name=mRNA_P-littoralis_Contig19.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig19:2972..5065- (Pylaiella littoralis U1_48)
GGCGTTGGAGGGGGTGCAGCAGGACCAGGCCTTCCGCCTCAGGCGCCAGG
GTTAGGGGGAGCTGCTGGAGGGCCAAGTGATCCAGCGGAAGTTGGGAGCG
CCGATGGTGGCGGTTCGGCGGCAGCCCAGGGCTCCCGCAAACGCACCTTG
GCCGAACTTCACGCTGCCGTCGACGAATTATCTGAGCGGCAGAGCCTGGC
GGACGGACTTGGGCAACCAGCGGAACGAGATGCGGTGGCCACGCCCCCCG
CCCGGCGTCCCATGACCTACGTCTCAATTCCCGATAAGTTCAAAGCTTCG
TGGGGTACCCTTCTGCACAAGGCC
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