mRNA_P-littoralis_Contig189.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.95.1
Unique NamemRNA_P-littoralis_Contig189.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig189.95.1 vs. uniprot
Match: A0A6H5K4W1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.490e-8
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   10 IDKTFQAFSLLSTALTSESDKQLIRHCATPREAFKKLKSVYQPHTEAAVQELYLQLSRYKISSNRNPIECL 222
            I KT+ A++ LS ALT+E+DK ++R C  PREA ++L + Y P T+ A Q+L+ +  +Y+     NP+  L
Sbjct:  150 IRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASL 220
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BLAST of mRNA_P-littoralis_Contig189.95.1 vs. uniprot
Match: A0A6H5J624_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J624_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.670e-8
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   10 IDKTFQAFSLLSTALTSESDKQLIRHCATPREAFKKLKSVYQPHTEAAVQELYLQLSRYKISSNRNPIECL 222
            I KT+ A++ LS ALT+E+DK ++R C  PREA ++L + Y P T+ A Q+L+ +  +Y+     NP+  L
Sbjct:   79 IRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASL 149
[Close]
BLAST of mRNA_P-littoralis_Contig189.95.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.470e-8
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:   10 IDKTFQAFSLLSTALTSESDKQLIRHCATPREAFKKLKSVYQPHTEAAVQELYLQLSRYKISSNRNPIECL 222
            I KT+ A++ LS ALT+E+DK ++R C  PREA ++L + Y P T+ A Q+L+ +  +Y+     NP+  L
Sbjct:  230 IRKTYLAWNFLSAALTTETDKAILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASL 300
[Close]
BLAST of mRNA_P-littoralis_Contig189.95.1 vs. uniprot
Match: A0A6H5JE80_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE80_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.470e-6
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   10 IDKTFQAFSLLSTALTSESDKQLIRHCATPREAFKKLK-SVYQPHTEAAVQELYLQLSRYKISSNRNPIECL 222
            I KT+ A++ LS ALT+E+DK ++R C  PREA   L  + Y P T+ A Q+L+ +  +Y+     NP+  L
Sbjct:  249 IRKTYLAWNFLSAALTTETDKAILRRCMNPREALXSLPHAAYLPETQGAQQQLFREFQQYQTPRKENPVASL 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4W1_9PHAE1.490e-840.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J624_9PHAE2.670e-840.85CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KEL4_9PHAE3.470e-840.85CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JE80_9PHAE4.470e-640.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:434765..435574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size810
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.1574817-UTR-P-littoralis_Contig189:434764..4350901680789905.1574817-UTR-P-littoralis_Contig189:434764..435090Pylaiella littoralis U1_48UTRP-littoralis_Contig189 434765..435090 +
1680789905.1849976-UTR-P-littoralis_Contig189:435555..4355741680789905.1849976-UTR-P-littoralis_Contig189:435555..435574Pylaiella littoralis U1_48UTRP-littoralis_Contig189 435556..435574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789905.1709993-CDS-P-littoralis_Contig189:435090..4355551680789905.1709993-CDS-P-littoralis_Contig189:435090..435555Pylaiella littoralis U1_48CDSP-littoralis_Contig189 435091..435555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.95.1prot_P-littoralis_Contig189.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 435091..435555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.95.1

>prot_P-littoralis_Contig189.95.1 ID=prot_P-littoralis_Contig189.95.1|Name=mRNA_P-littoralis_Contig189.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MNTKNQLGSSSSLTRDEIIRVTGTRYRNLRLKHDAAKEKTREKNVAFLVD
GGGASSERHNKSKKGNGGGGKSGGEDSKRCYKCYRKGHISGDCETKPSDF
LEKCTACDGYGHGKEKCPSGMEKANVAMAFMGPAKEESIMMWKPMPSEWR
SSRL*
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mRNA from alignment at P-littoralis_Contig189:434765..435574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.95.1 ID=mRNA_P-littoralis_Contig189.95.1|Name=mRNA_P-littoralis_Contig189.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=810bp|location=Sequence derived from alignment at P-littoralis_Contig189:434765..435574+ (Pylaiella littoralis U1_48)
CTCAGAACAATCGACAAGACATTCCAGGCATTCAGTTTGCTGTCTACGGC
GCTAACTTCTGAGAGTGATAAGCAGTTGATCAGGCACTGCGCTACCCCTC
GTGAAGCGTTCAAGAAGCTAAAATCCGTGTACCAGCCGCACACCGAGGCG
GCGGTGCAAGAACTCTACCTACAACTTTCACGGTACAAGATCTCATCAAA
CCGCAACCCGATCGAATGCCTCACTTGAGATCGAGCACATGAGTCAGCAG
ATAGCCGAGTGTGGAGGCAGCAGCTACGACCAGCGGTTTGTCTTCACGCG
TTTTATTGACGCGCTCCCTGCAGAGTATGAACACCAAAAACCAACTGGGG
TCATCCTCGTCTCTCACTCGCGATGAGATCATTCGTGTCACGGGGACCCG
CTACCGCAACCTACGCCTGAAACACGACGCAGCAAAGGAGAAGACGAGGG
AGAAAAACGTGGCTTTTCTCGTCGACGGCGGTGGTGCGTCGAGCGAACGT
CACAACAAATCCAAGAAGGGCAATGGAGGCGGCGGCAAGTCTGGCGGTGA
GGACAGCAAGCGCTGCTACAAGTGCTACCGGAAAGGACACATCAGCGGCG
ACTGCGAGACGAAGCCGAGTGATTTTCTCGAGAAATGCACGGCGTGTGAC
GGGTACGGACACGGGAAGGAGAAGTGCCCATCAGGCATGGAAAAAGCTAA
CGTTGCGATGGCCTTCATGGGACCAGCGAAGGAGGAGTCGATCATGATGT
GGAAGCCGATGCCTTCTGAGTGGAGGAGCAGTCGGCTATAGAGCACAGGA
GCACGGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig189:434765..435574+

>mRNA_P-littoralis_Contig189.95.1 ID=mRNA_P-littoralis_Contig189.95.1|Name=mRNA_P-littoralis_Contig189.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig189:434765..435574+ (Pylaiella littoralis U1_48)
ATGAACACCAAAAACCAACTGGGGTCATCCTCGTCTCTCACTCGCGATGA
GATCATTCGTGTCACGGGGACCCGCTACCGCAACCTACGCCTGAAACACG
ACGCAGCAAAGGAGAAGACGAGGGAGAAAAACGTGGCTTTTCTCGTCGAC
GGCGGTGGTGCGTCGAGCGAACGTCACAACAAATCCAAGAAGGGCAATGG
AGGCGGCGGCAAGTCTGGCGGTGAGGACAGCAAGCGCTGCTACAAGTGCT
ACCGGAAAGGACACATCAGCGGCGACTGCGAGACGAAGCCGAGTGATTTT
CTCGAGAAATGCACGGCGTGTGACGGGTACGGACACGGGAAGGAGAAGTG
CCCATCAGGCATGGAAAAAGCTAACGTTGCGATGGCCTTCATGGGACCAG
CGAAGGAGGAGTCGATCATGATGTGGAAGCCGATGCCTTCTGAGTGGAGG
AGCAGTCGGCTATAG
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