mRNA_P-littoralis_Contig189.88.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.88.1
Unique NamemRNA_P-littoralis_Contig189.88.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: D7FJR1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR1_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 2.530e-84
Identity = 141/177 (79.66%), Postives = 154/177 (87.01%), Query Frame = 1
Query:    1 MRGTIGALICAMAAVQGAMGFVAPLSTRALGRQT---ALPSSSSAAQPATTATRLRMVATDIPKFCVSLMDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHLALFK 522
            MRG IGAL CA+AAV G  GFVAPLS R  G+Q    A  + SS+ QPA  A RLRMVATD+PKF VSLMDDTRVSFH+DE++VRKLA  VNNILRSFKRLKANAAEGGKPYKEDSVE+K T+DGLNI+VECNPNIFPDPFKAQVFVR++DDKMEVSSQAMLTKLTDAIKQHLALFK
Sbjct:    1 MRG-IGALCCALAAVHGVTGFVAPLSPRGFGQQQTARAFSAPSSSQQPA--AARLRMVATDLPKFTVSLMDDTRVSFHMDEKDVRKLADVVNNILRSFKRLKANAAEGGKPYKEDSVEYKDTIDGLNIVVECNPNIFPDPFKAQVFVRVYDDKMEVSSQAMLTKLTDAIKQHLALFK 174          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: A0A835ZHH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHH2_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.390e-32
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 1
Query:   13 IGALICAMAAVQGAMGFVAPLSTRALGRQTALPSSSSAAQPATTATRLRMVATDIPKFCVSLMDDTRVSFH-IDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFK-GTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHLALFKTA 528
            +  ++ A+A V G + F AP S   L RQ A+ S ++ A       R+R  A  + KF + L DDTR++ H  +  +   LA EVN IL +FKRLKAN A+G  PYKE SVEF     +G  I +ECNPN++PDPFKA VFV++ D+ +EV+SQA LTKL D IK +LA  K A
Sbjct:    4 VAGVVAALACVGGVLSF-AP-SQPLLARQHAVASRTTGAS-----VRMRS-APAVHKFSLPLADDTRITVHGFERSHCLALANEVNAILSAFKRLKANRADGKAPYKEQSVEFIIHAGNGATIEIECNPNLYPDPFKAMVFVKVLDESIEVASQAQLTKLADVIKTYLANTKEA 169          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: A0A2T1M3G8_9CHRO (Uncharacterized protein n=1 Tax=Aphanothece hegewaldii CCALA 016 TaxID=2107694 RepID=A0A2T1M3G8_9CHRO)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-14
Identity = 38/102 (37.25%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  214 VSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHLALF 519
            VSF    E  + L  E+N ++ S K + +NA+ GGKP  +  +E++ T D + + V CNPNI+P PF A+V + + DD++ ++++A L +LT+ ++Q L  F
Sbjct:   13 VSFSFTVEAAQNLKQEINQLMLSLKAIASNASSGGKPKPQKMMEYRYTGD-VFLEVFCNPNIYPSPFAAKVLLTVRDDRIRLTTEAELMRLTEDLEQFLNQF 113          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: A0A0G4GV24_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GV24_VITBC)

HSP 1 Score: 76.6 bits (187), Expect = 5.650e-13
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  181 KFCVSLMDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGG-KPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQH 507
            K  + +  DT V      E  ++L+A+V+ +L++F R+ A+  EG  +P +E S+EF+  VDG  I  ECNPNIFPD  KAQVF ++    +++++Q     L +A+ Q+
Sbjct:   69 KLRLPVFGDTSVGVAFTPEACKELSAKVDEVLQTF-RVIADRREGRERPRREPSMEFQTEVDGTRISFECNPNIFPDYTKAQVFFQVKSPHVDITAQLSFQSLIEALAQY 177          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: M2XQ70_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XQ70_GALSU)

HSP 1 Score: 75.5 bits (184), Expect = 1.110e-12
Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  190 VSLMDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQ 504
            + L DDT+++F     ++ +L  ++N ++ SF+   A A    K   + + E+    +GL I +ECNPN+F   F+A+V++R++DDK+ V SQA LT L D +++
Sbjct:   63 IPLQDDTQLTFMFSYADMLQLVEKLNQLVLSFRNA-AEATAQRKKTVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQASLTTLMDVLRK 166          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: A0A7S2RP53_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RP53_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.590e-12
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  196 LMDDTRVSFHIDEENVRKLAAEVNNILRSFKRLK-ANAAEGGKPYKE--DSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHLA 513
            L D T        +   +L+ ++N++L +F   K    +  G+  +    S+E+  + DG  +L+ECNPNI+PDPFKA VFV++  D +EV++Q  L +L DA+K + A
Sbjct:   63 LGDTTHAKVSFSAKEADELSQQLNDLLATFSSSKDGEESSSGRRQRVRLPSMEYTSSHDGRWMLLECNPNIYPDPFKALVFVKVRTDALEVTTQCFLPQLVDAVKAYRA 171          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: UPI001746F5EA (hypothetical protein n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI001746F5EA)

HSP 1 Score: 69.7 bits (169), Expect = 3.610e-11
Identity = 35/107 (32.71%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  199 MDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHLALF 519
            + +  VSF       R+L A + +++ S K   +N A GGKP  +  +E++ T + + + V CNPNI+  PF A+V + + DD++ ++++A LT++T+ + Q+L  F
Sbjct:   10 LSEGSVSFSFTPNAARELQAAIASLMNSLKATASNTA-GGKPQPQQPMEYQHTGE-VFLEVFCNPNIWSSPFAAKVLITLRDDRIRLTTEAELTRITEDLNQYLDQF 114          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: UPI001682B17B (hypothetical protein n=1 Tax=unclassified Planktothrix TaxID=2648599 RepID=UPI001682B17B)

HSP 1 Score: 64.7 bits (156), Expect = 2.400e-9
Identity = 36/111 (32.43%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  199 MDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGG----KPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHLALF 519
            + D  VSF    E  R+L   +  ++   K + A A  GG     P K     + G V    + + CNPNI+P PF A+V + + DD++ +S++A LT++T+ I  +L  F
Sbjct:   10 LGDGSVSFSFTPEAARELQGAIAQLMERLKAVSAQATGGGGGKASPQKPMEYRYAGEVF---LEMFCNPNIWPSPFAAKVLITLRDDRIRLSTEAELTRITEDINVYLEQF 117          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: M2Y8H4_GALSU (Peptidyl-prolyl cis-trans isomerase-like-protein isoform 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8H4_GALSU)

HSP 1 Score: 67.8 bits (164), Expect = 4.550e-9
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  190 VSLMDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTD 492
            + L DDT+++F     ++ +L  ++N ++ SF+   A A    K   + + E+    +GL I +ECNPN+F   F+A+V++R++DDK+ V SQA    + D
Sbjct:   63 IPLQDDTQLTFMFSYADMLQLVEKLNQLVLSFRNA-AEATAQRKKTVQPTFEYYCQRNGLFIHMECNPNLFTSAFQAKVYIRVYDDKIRVHSQAKNKLMND 162          
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Match: UPI00168313A8 (hypothetical protein n=1 Tax=Leptolyngbya sp. FACHB-711 TaxID=2692813 RepID=UPI00168313A8)

HSP 1 Score: 59.3 bits (142), Expect = 1.830e-7
Identity = 31/104 (29.81%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  199 MDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKANAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDKMEVSSQAMLTKLTDAIKQHL 510
            + +  V F       R+L + +  +++S K   A AA G KP  +  +E++ T + + + V CNPNI+  PF A++ + + DD++ ++++A LT++++ I Q+L
Sbjct:   10 LSEGSVIFAFSPTAARELQSAIAVLMQSLKATAAKAA-GSKPEPQPPLEYRHTGE-VFLEVFCNPNIWSSPFAAKLLITLRDDRIRLTTEAELTRISEDIAQYL 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FJR1_ECTSI2.530e-8479.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHH2_9STRA2.390e-3247.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2T1M3G8_9CHRO1.140e-1437.25Uncharacterized protein n=1 Tax=Aphanothece hegewa... [more]
A0A0G4GV24_VITBC5.650e-1337.27Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
M2XQ70_GALSU1.110e-1235.24Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7S2RP53_9STRA1.590e-1235.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI001746F5EA3.610e-1132.71hypothetical protein n=1 Tax=Phormidium tenue TaxI... [more]
UPI001682B17B2.400e-932.43hypothetical protein n=1 Tax=unclassified Planktot... [more]
M2Y8H4_GALSU4.550e-933.66Peptidyl-prolyl cis-trans isomerase-like-protein i... [more]
UPI00168313A81.830e-729.81hypothetical protein n=1 Tax=Leptolyngbya sp. FACH... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:401076..411546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1128427.KB904821_gene1473
Model size1043
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.43e-15
EggNOG OGs2AERS@1|root,314NH@2|Bacteria,1G6KP@1117|Cyanobacteria,1HBFU@1150|Oscillatoriales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010530.1
Cds size531
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789904.9546928-UTR-P-littoralis_Contig189:401075..4015871680789904.9546928-UTR-P-littoralis_Contig189:401075..401587Pylaiella littoralis U1_48UTRP-littoralis_Contig189 401076..401587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789904.9660997-CDS-P-littoralis_Contig189:401587..4017401680789904.9660997-CDS-P-littoralis_Contig189:401587..401740Pylaiella littoralis U1_48CDSP-littoralis_Contig189 401588..401740 -
1680789904.9752624-CDS-P-littoralis_Contig189:402680..4027971680789904.9752624-CDS-P-littoralis_Contig189:402680..402797Pylaiella littoralis U1_48CDSP-littoralis_Contig189 402681..402797 -
1680789904.9836516-CDS-P-littoralis_Contig189:411285..4115461680789904.9836516-CDS-P-littoralis_Contig189:411285..411546Pylaiella littoralis U1_48CDSP-littoralis_Contig189 411286..411546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.88.1prot_P-littoralis_Contig189.88.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 401588..411546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.88.1

>prot_P-littoralis_Contig189.88.1 ID=prot_P-littoralis_Contig189.88.1|Name=mRNA_P-littoralis_Contig189.88.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MRGTIGALICAMAAVQGAMGFVAPLSTRALGRQTALPSSSSAAQPATTAT
RLRMVATDIPKFCVSLMDDTRVSFHIDEENVRKLAAEVNNILRSFKRLKA
NAAEGGKPYKEDSVEFKGTVDGLNILVECNPNIFPDPFKAQVFVRIWDDK
MEVSSQAMLTKLTDAIKQHLALFKTA*
back to top

mRNA from alignment at P-littoralis_Contig189:401076..411546-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.88.1 ID=mRNA_P-littoralis_Contig189.88.1|Name=mRNA_P-littoralis_Contig189.88.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10471bp|location=Sequence derived from alignment at P-littoralis_Contig189:401076..411546- (Pylaiella littoralis U1_48)
ATGAGAGGAACAATCGGAGCGCTCATCTGCGCGATGGCGGCCGTCCAGGG GGCAATGGGCTTCGTGGCGCCACTCTCCACGAGAGCGTTGGGACGGCAGA CAGCGCTACCTTCTTCGTCGTCTGCTGCCCAACCAGCAACAACAGCAACG CGGTTGCGTATGGTAGCTACGGATATTCCCAAGTTTTGCGTGTCGCTGAT GGACGACACTCGGGTATCGTTTCACATCGACGAGGAGAATGTCCGGAAAC TGGCTGCGGAGGTAAGAGAACGGAAGAAGACACAGGCGAGGCGGCGGGGG CAGTCGCGGGATAGCAACGCACACGCCGTACGTACATACGGGTCTATGTG TATGATATCGCGATTTTCCCCGCGCACTACTGCTGTTGATCGAGCCCTCC AGCTTTTCACTTGAAAACTGAGTGGACTGGTGAAACCCGAACACTTAATA TCGCTTGCCGCGGTTCAGAGGATGCCATTGGCTGCTTCTACTGCTGTGCA CCCTTTGTATCGTACTTTAGAAGTACATATGATGTGATATGATACCACTT TGTTGTGTCGTATGATAACATATTCTCACAGCACTCTAGGTGTTTTGTAT TTTATGATATTTGAAACAAACACGCAATCTTTTTTAAAACGTTTCGAAGT TGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGT CACAAACCAGGCACATATCGTGCTAGGGGGAAAAAATAAATAAAAATAAA ATAATGGACTATGATCACCCACAGTCAGATCAGTTATGGTACAGTTGGGG TACCATCTGTCGTGGCCAGAATACCAAACAAATACAGAAAAAAATAACAG GCTCGAAAGAAAAAACAAAAATTGGAAACAGTACGACAAACAAAAGATAA CCAAGACAAACCTCAATCATAACCATATACTTCGAAGTACTTCGTACATC GAACCAGGGCCCAGGGCCATGACAGACCAAGGCAAACGCAAACCAGGGCG ATGGTCCAGTAACTACAGTATAAGATCAAAAGACGAAATACAAAAAACAA AATAAAAAAGAAGATACAGGGAGGGCACAAAGACTGAGGGAGTGCATTCG GAGACAAACACAACAAACAGGCCGCCAATCAAAGAGGAAGCAGGGGAACG AAAAGGGAAAAGAAGACCGGACGTACCGGAAGTCGGGGGGGGAGGGGGGA GGTGATAAAAATAAAATGAAAGGCATGCAATCAATCGCAAACATGTCTTG CCACGAGGTCTGCCTGTTCACGCTTGCTCTCCTCAGTCGCACTCATGCCT CCTGCTACTGGCACCACCATACCCAGTTGTTTCTGCCCCACACCTTTGGC AGCAGCTACACCACCACTCCGCCCTACAGGTTTTCCACTCCGGCCACCCC GTAGCTTGGCATTGGACTGCTTCTTCTTGTGCCGTGCAACTTCAACCCCA CTACCCCGCTGCCCTTGTGCCCCCCCGTACCCCTCCTCTCGTTTATCCCC GCCATCCGTTCTCCCTCTTTTGGTCAAGGCCTGCCCCTCAGCCGCGTCCC TCTCCCTTTTCCGTCGACGTGTCTCTGATAGGTCTCCCTCTTTCTTGAGC CACTCGTCCGTGAACCGCCGCGCACCCTCGTCGATCCTGTCGTACCACTC GTCAGCTCTCTTGGCACTTGCCTCCCACCCCTCGTTTTTGTCGACCACGA TGTCGAACGCTTCGAGGTCCTCCTGCATTCGCCTCAGCCAGTCAAACTCT TGCCCCCCCAGATACCTCGCTCCCCCCTGCAATTCTCCCAAAAGAGCAAT TTTCGGGAGTCTCTCGTCTCTCATGCGCGCAACGAATCCCGCGAAGCACA GTCGCCGCTTGCGCACGGTGGCCTCAATGCTCTCGTTGCAACCCGCGGTG ACCAGGGCTTTGGCGTAGGAGAGGGGTCGGTCTGTTCTCTCCCTCTTTTT CCATCCGATGCAGCGAAGGAGGAAGAAGTGGTGGGCTGACCGAAGCTTGC GGTACTCCGCTGGCTTCAGATTTCATGTGACACACCCGTAGAGTAGGGTC TCCACGACTTCGGCTTGGAGGAGTCGTACTTTTGGTCGAAGAGGGCCCCC CGGGCGGTCGTACATTGCCTGGCTATGCGCCGGAAGCAGGCGTGCGCTCG CTGCACTCGGTGGTTAATCCCGCCCTCAATGCTACCGTTCTCACAAATCT TACCCCCGAGATACACTTTCTTCTGCTTGAAGACCATCCCGGCAGCGTCG ATCGTGAACGAGCACGCCTCCATCCCTTTCGCGAGCATACACATGGTCTC CGTCTTGGGTTCTGACACCAACAGCCCAAACCGCCCGGCCACACGTCCGA TGATCGACATCATTTTCTCAAGGCTCCCAGGTGATTAGATACAATACAGG CGTCGTCGGCGTAGAGCATACTCCAGATGGGCTTCATTGCCTCCACCAGT CGGGCGTTCCTCCCCTTCCCCTTCGTCACCTTCCCCTTGATCTTGGCCAT GTCCGCCATCACCTCCGCGTCCTTGCTGATCTCGGCAAAGGCCACCATGA GCATCGCAGCAAGAAAAGGTTGAACAGCAGGGGTGCCAGATTGCATCCCT GTCGGAGTCCCTGCCCCACATCAAACCAGTCGGAGCACCTCCTGTCGTCC ATCCGTACGCATGCTTTCATTCCGTCGTGGAATTGGCGAATGACGGTAAG CATCTTGGGGGGCACTCCGAGCCGCTTGAGCACCGACCACAGTAGTTCCC GGTCTACGGAGTCGTAGGCTTTCGTGAGATCGATAAAGCAGGCGTACAGT GGGGTTGACTTCTTCCGCGCAAGCTCGTGTAGGCGTCGAACCACGAACAT CATGTCAACCGTTGAGCGGTTTGGTCGGAAACCGCTCTGTTCCTCCGGCA GGATGCCCTCTCTTTCGCAGTAATCGCTTAGCCGGGTGGCGACCAGCTTC AAGAGTACCTTGCCAGCGTGGGCCACAAGGGAGATGCCTCGGTAATTGCC GCATTCCGTCTTGTCCTTCTTCTTGTGCAGCACCTTGATCGAAGCATCTT TCCACTGCTGTGGCACCCTTCCCGATTGCCAGATGTTGATGATGGTACTG TAGAACTGCCGTAGGAGGGCTTGGTCTCTTTCAAGGAAGAGCTCGATAAG CTCCGCCGGTAACTCGTCCGGGCCCACACCTTTCCTGTTGGCCATGCCCC GGATTGCTTCCTCAACCTCAAACAGCGAAGGGACGTCGTCAAGCGGTACG CACTGAGGCCAGGGCTCGATCTTGTCCACCACTCTCGGATCCAGGGTCGG TGACTTGGTGTTGAGCAGAGCATGGAACCACCTGGCCCACCGCTCGAGGA TAAGTGCGGGGTCCCGAAGAAGATTTCCATCCTCGTCCTTGATGTCCTGT GAGGTGAAGGCCCTCTTCCACTCCACATCCAATCCCTTCATGTGCTTGTA GAAACCGGCCTGGTCCCCTTCGCGGCTTTTCTTCTCGAGCTGACTCACAA ATCCATCGAAGAACTCATTCACAGCCCTGGCTCTAAGTCGATCAAGGTGC TTCCCGGCCGCCTTGAGGTTGCTCCTGAGGGTGGGATCTTTCGGCGCACC GCGGAGCTGCTTCCGGGCGTCCTCCCTCTTAAGCCATGCCACGTGGATCT CCTGCTGCACTTCCTCACTGGCGCACCAGCCACTTGGCAATCTCTTGCCC TTGGCCCGGGGGGCAACGTCAGCGGCGGTGGGCATCACAGCAGTCGTCAA GGCCGACGCGAGCTCATCCACATTCGCACCTTCCATGATGGGGGAAATTC TGTCTCTGAAGTCTTTCCGAAGTTGGGGATCTGCCATCAACCGTTGTAGA TCGATGCTAGCGGAGCTACGGCTGCTGCTACTACCCCTCACACGTCGATT CGGTGCCACTCGGCCAAGCAAGCGGATGTTGGCAAGGACGAGGTTGTGGT CGGAGTCCTTACGATCGATGCGCCGTACAGAGACGTTGCGCACCAACCGA AGGTCTGCCTGGCGGGTCAGGATGTAATCGAGTCGGTATTCTCCCTTCCC GCGGTTGGAGCTTTTGAAAGAGTGATATCCCGCGTTTGGGTGTGCAGAAA AAGGTGTCCAGGATGGAAAGCCTACAGCTTGCTGCAAATTCCACCAGTCT CTGCCCGTTATCGTTCCGCTTGTCACGCCCGTACATGCCCATCACCTTAT CAGGGGTACTCTCATCCTCTCTTCTACCAGTTCGAGCGTTCGCATCCATC ATAACCACGACGTGTTCCCTGCTAGGTACTGCATTGACTGTCTCTCTCAC TGATAGCCAGAATCCATCTTTCTCACTAGTCCCATCCGTCTCGGTGGGTG CATAGGCAACCACAAAGGATACACCGTTCGAGCCAGTGGGTTGCAGGCGT ACCTTCATCAGTCTTGCGCTAATGCACTTCACCGTCATACCTCCTTTGTC CATCCCATCCACGATGGACTGCTTGATAGCCAGCCCGACCCCGTGCACTC CTTTCTTCTCGGTGGTCCCGGCACGTGCTCCACTCCAGATCACAACATAT CCCGCGTGTGTGAAGGCACCATCATAAGCACGCCGGGTTTCCTGGAGGCC AACCACATCGCAATCGGAGCTACCACAGAGCTGTAGCACGGTGTTGGAGT TGTGGCCGATACCGTTGGCGCCCTTGTAAGCAAGGGTGCGGACGTTGAAG GAGCCCACTACCAGTTCGCCTGCACGTGCCTTTGTTCTCATCTCTGCCCG TCTCTTTCGGTCAGCCTTGCGTAAAGGTCGGTTTCGCTTCCGTTTCTTTC GAGCTGCAATTTTCCTCCGTTCCATCCATCTTTGCCAAGCTCGGTACTCG TCTACGTTCAGGCGGGCTGGGGACGACACTCCCGGCCAGCGTCGACGTGA AGGTCGACGAGGGTGCTTACTAACGTGGTGCCTCCTAGTCTCTGCTCCTC AGGCTACGAGTTCCACGATTTCCGCGGTGATGTGTCGACACAGCTGCCGC AGACAGTTTGACTGTCGCGGAGACCAGACCATAGTTGGTCCGGACTGCTG TAGTGCCATTCGTCACCTCCATCACCTACCCAGCCTCGGCGTGCGCCGAG TAGGGTCTGACCACACCACTCCCACACTACCCTGTCTACTTTGGTAGAGC CCGGTGTGTCCACGAGGGACCCACTAGGTTGGGTGACCCCGGCCGGGGAG CAGCCGAGGGAGGAAGGATTGTATCACACAGTGAGGTGTGTGTTCATCCC ATCTGTTCTGAACACAAGTCTGCACATTTCGGTGTAACTTGGGCGCACGA GCCGGGGTAAAACAGGATGGCCGTTGAGGCAACACTGTTGGGGACACCGG GCATCATCCCCTTGACATATTCTCACAGCACTCTAGGTATTTTATGATGT TTGAAACAAACACGCAAACTTTTCTAGAACGTTTCGAAGTATCACACAGG GAGGTGTGTGTTGTCATCCCATCTGTTCTGAACACAAGTCTGCACCTTTT GGTGTAACTTGGGCGCACGAGCCGGGGTAACACAGAATGGCCGTTGAGGC AACACTGTTGGGGACATCGGGCATCATCCCCTTGGGCTCCGTAGTGATAT TTTTGGCTCTACGGTATAGTGTTTTTCTTTCCCACAATTCAAACTTTTAG ATGAAAAATCCTGGGTGGATGTTGTTGTTGTTGATTCTCACATTAGCTCA CTACCGCCACAGTCTAGCCCGTAGTCACAAACCAGGCACATATCCTGCTA GGGGGAAAAAAATAAAATAAAATAAATGGACTATGATCACCCACAGTCAA ATCAGATAGGGTACCGTTTGGGTACCATCTGTGGTGGTCAAAGTACCAAA CAAAATACAGAAAAAAAATAACAGGTTCGAAAGAAAAAACAAAATTGGAA ACAGTACAAATATAAAAAGAAAAACCAAGACAAACCTCAACCCTAACCAT ATACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGA CCAAGGCAAAGGCAAACCAGGGCGCAGTGGTGCACTCCCCTGACTGCTGT ACGCTCCATATCCACCCTCCCCCATTCAGGCTTAGGAGGCACAAACCTCT ACGAGTGTAGGTTTATAGAGATATCACAGCGGTTTGACCTCCTTTGTGGA TTACAATTGTGCCCCACCTCTGTAAATGCCTTGTAGCGCGAGATCGAGGT ACTCAAACGTAAGGTTTTGAGCACCATCTTGCCGCATGGATTTTATTTTT GCGTCAATTACCGCAGAAAGTGTGCTTCAAAAATTAGTTTAAATGAAAAA AACGATAGCTGCGGACAAAGCAAGCTTGTCATAGACAACGAAACTGCCTC AAAATGCCACAACCTACTGATGTGGTGTGTGAGTGGCGTCCCGTGCCTTG ACAGCAGCAGTAGGCAGCCAGAAACCCTTCTAGAGGTATTGGTGTGAACT GTTTCTAGATGCCTGCAGCAATCCGAGATCACACCAAAATTGGAGACCTG CGGGTGAATTTGCACGATGCCACCTTTGTCCGCGTGTGTACCCCCGATCA ACAAATTGGACGCGAATTTAGCTGGCTTACCGGGCGATCTTCTAGGCGAA TAAACCAAAGAGTTTTCTTATTGGGCACGATTCCGAAATTCAATCTACGG CCCAAAAAGCTACTAAAAACACGTTTTTTCTGGACCACCTCCAAATAATG CTGTATTTGTGCAAATCCCACATATGTTCAAGTCATTTGGTTCCCTAGTG CAAAATGCCACTCGTCTACAGCCTCTCTTTTCATACTGAACACAGTGTGA CCTGGACGCAGAAGTTTGTTTGCTTTTTCTCAACCTTTCCTCTGCAGGTT TTTGAGTACCACATGTCAGGCTGTTTCCCATACGACCGGTTTTTCTCGCT TACTGCTGGAAGAAGCTTTGTTACGGATCGGAAAACCCTTCACGCATCAG AAATCGGCTTTTTTATGTGGGACTTTTGGAGGCCATCTTACAGATCGGAG ACAGCCTTTTTTTATCCGAAATTTTCTAATAACTTTTTCTGATCGACCCG ATCGGTCAGGAAAAGCTTTTCCGGATCGGTTGGGTCGATCACAGAACGTT TATCGAAGAGTTTGGGCACCCCCTCTCTCAGCCGTTCACAATTAATGAAG GGTGACTTGAACAACTATTTTTGCAAGCCTATCGATGCCTTGCGGCCTCA GATGACCACCAGAGGAGAGGGACCAGACACACAGCTCACTGGCGGTGACT TTGATATTGCCGTGACCTTATTCGTTCGAGAGTGGTGGACGAAAAACTGG ACTGGTGGCGCAAAATACCGTGCTGCTACTGCTGCTGCTTCCTGCTGCTG CTGCGGGCTTTTCTCATGTTTTCCTTCTTGTTGGGGCACGTCATGGATGC CTGCAAACGTTTTGTGAGCCTGTTGATGCCTCGAGGCCTCTGACGACCAC CAGAGGAGAACGACCGTACACACAGCTCACGGGTCATGGCTTTAGCATTA GGACGCTAGCCGGTTGACAAAATTAATGTCAACCGTCTGTCAGGTATCAA ACAGCCGCAGAACAACGGCTTGTTTTGTTTTTCGGCTCAAAAATATCTCT TCAGAGCCCAAACTACCCTGGGAATACCATTGATCGATGCAACCGACACG TGTAGGACATGCTCGTCACGCCCTACTGCGGGTTCGCTCTTGGTGTGTTT GGATGCGGCTCAGGAGACTTCTAGCGTCAGCCGAGTTACATCTGTGCGTA CGCGTGCGTGTCATGTGGGTACACTCTTTCCGACAGCATCGTGGCATCTA AGGATGGGTTCGAGAAATCTGAGCCGCTTTTTTCCGCGGGCGGCGTCCCG CACTTGTTGCGCCGATCACGATCCCATCGACAACGCCGAACTAATTCGCA GATCAGTCCCTTGGAGCTCTGCAACTCTGGTGAAAGCGACCTTCGCAGAA CCCCATTAGTGCCGCCTGTGAGAGGCTCCATAGTAATGGCAGTTCGCTTT GCATCAACCGGATTATTTTTCTTACGGTCTCGGCAGCACACCGAGCGCCA GACCTGACCTCTCAATAAGCTCGATAAACGCTTCACGTTGGAAGGTATGG CCACTTTTGAAACGAAAGCCTACGCAAAAAAAAAGGCGTTTTACACTCCG AGCAACAGCAGAAGAAGATCCACTTAATACGTCAGCGTTCTGGCCTTATA TTGTGATTTCCAGCCTGTGTTGTTTGTACTCCAGAGTATTTTGTTTGTTC CGTGCCGCCTTCCACTTGCAAGTCAAATGTGTCCCCTCATCAGGGCGAGT TCGTTGGCTCCCGGTTGCCGCAGGTGACTCAAGATGCCATACCCCCTGGA CAACAGATGTTCAATGGTTGATCGTTTTCCCCGTAACGAAGAAAAGAGGG CGCTAATACGGAACATGTCTTCGACTAGCTTTTAGCACGAGACCTTTCTA TAATAGGACGCCACCATTGTCGACACTGACAATCGTCTTCCTGCGGAGTC GTCAAATCAAGCTTTTCAGAATCAGTCAAGAGGGTGTGGTATATTTTGCT TAGAAAACGTATGGTATGTAACCTACAGTAGACGTTGCTGTCGCTTAGTT CTTCCGAAGATATACGCAACGCGTATCACGCCCGCCTGCTGCACACACAC AGCAGTACTCGAAGATCATGTTCCGTATCACCACCATTGTCGTTATCGTC GTAACGAAACGGCGCCACCAACCGATCGACCAACCAACCATCGAACAAGG TGAACAACATTTTGCGGTCGTTCAAGCGCCTGAAGGCGAATGCGGCGGAA GGGGGAAAGCCCTACAAGGAGGACAGCGTGGAGTTCAAGGGCACCGTTGA TGGCCTCAACATTTTGGTAAGACATGAGGAGCCGTGACAAAATTCGAGCG CTGTAATGGCATTTCCTCCTCTCCTTCGTCTGGCCGCAAGGGCACCATTC TTTGGCGTTAGTCCTCTGAGGAGGTTACAGCGTCATGTGCCTGTAGTTAG CGTAAGCAGTACAACTCCGAGAGCACCAAATATATTGCGTCATCGATGCG TCGTGTGATCGAGGTGTTAAATAGCGGCGAGTAAGCCTCGCTTCAATTCG CGTTCCCACTCTTCTCACCATCAAGCTTGGGCTCTAGCGCGACATCTCTC TCGAAACGGAGGTCGGTCTCTGAGGAACAATTTCAATTCATCGTAGGACT GGTGGCAACGAAGTACGGAGTATGTATTTTTTGTCCAGCATTAGGTCTCT CGTGTCATTCGTGCTGTTGCTGCGACGTCTTCGTTTTTCGAAGCAAACAT CGGTTTGGTACGGAAAGTGTTTCTTTGTTCCTTAAGCTCTCTGAACGACC ATCTTCGTATGGAAGCATGCACGTTATGCCCTTTTGAGATATCCAGTTTA TCTGTCCACTGGTGCTCCGCTCGTCACCTTGAGATACCCCGACAATCCCC GCTGAAAGTTCGCGGTTGTAAGAAACGACGGTGCTTCATGTCTTTTCTCG CAACCTCTCAGATGTGATTCACGAATAGATTTTGTCTATTGATATGTTCT GTATCAAGTGTGCCGTGAAGTTATGCCCCTTGTACGGAACACCTCGATAT TGATGTAGTCGCCCGTCCGAGCACCGATGGCGGTGCTGTTCCTTCTTGTG CCTGCCTGGTCGGTTTTTAATTTCTTGCACATGACCGTGGTTTTCTCTTT CCTCTGGCCGTATACTTCAGTATACCTTCTTGCAGCGTAGTTTTTTGTCA ACGTGTGCGCCCCGTGATTCCTCCTGTGACGTATTTTTCCTTCACGCCAT GGACAGGTGGAATGCAACCCCAACATCTTCCCTGATCCTTTCAAGGCCCA GGTTTTCGTGCGTATTTGGGACGATAAGATGGAGGTTAGCAGCCAAGCGA TGCTCACGAAACTGACGGATGCCATCAAGCAGCACCTCGCGTTGTTCAAA ACGGCTTGAACGCCGTGACGCCTTGTGCGGCCTTGCAAGTTATTGTTGAA TGTGTCTCCCTGCTGCTTCGGTGTTGCGTAAAGCAGTAGATATAGAGGCG AAGACATCTTTGGGTGTGTTGCACTAAAACACTCCACGCAGATACGTTTT GATCTTTGTTTGGCGCTTGATGAGAAGGGAGGTAACGCGGTTTTGAGGGT GCTTTGTTGTTTGAATGTGTAGGTGTGCAGTTCGTATGAAACCACTTCCA CAGGGATCATTGTTCACAAGAGAGGCGAATTCAAGCACGGAGGCTACACA CAGACGTCGTTCGTGAAGCGTGGAATGTCCTTTTGAGGCTCAACATGGGT GGCAATTGGGGACTGGTTTTGGAAAACAAGTCATTTGTTAGCACAGGAGA GAGTGAGATGAAAGGTGCCCGCAGTCATCAGTCAAGTCTTTTTGGTGGAC GCATGGTTCGGGAAATATAGGCAAGCGCCTCAGCACGTGTACCATGCAAC CGCGCCACAATTTGTGTCGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig189:401076..411546-

>mRNA_P-littoralis_Contig189.88.1 ID=mRNA_P-littoralis_Contig189.88.1|Name=mRNA_P-littoralis_Contig189.88.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig189:401076..411546- (Pylaiella littoralis U1_48)
ATGAGAGGAACAATCGGAGCGCTCATCTGCGCGATGGCGGCCGTCCAGGG
GGCAATGGGCTTCGTGGCGCCACTCTCCACGAGAGCGTTGGGACGGCAGA
CAGCGCTACCTTCTTCGTCGTCTGCTGCCCAACCAGCAACAACAGCAACG
CGGTTGCGTATGGTAGCTACGGATATTCCCAAGTTTTGCGTGTCGCTGAT
GGACGACACTCGGGTATCGTTTCACATCGACGAGGAGAATGTCCGGAAAC
TGGCTGCGGAGGTGAACAACATTTTGCGGTCGTTCAAGCGCCTGAAGGCG
AATGCGGCGGAAGGGGGAAAGCCCTACAAGGAGGACAGCGTGGAGTTCAA
GGGCACCGTTGATGGCCTCAACATTTTGGTGGAATGCAACCCCAACATCT
TCCCTGATCCTTTCAAGGCCCAGGTTTTCGTGCGTATTTGGGACGATAAG
ATGGAGGTTAGCAGCCAAGCGATGCTCACGAAACTGACGGATGCCATCAA
GCAGCACCTCGCGTTGTTCAAAACGGCTTGA
back to top