mRNA_P-littoralis_Contig189.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.85.1
Unique NamemRNA_P-littoralis_Contig189.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig189.85.1 vs. uniprot
Match: A0A6H5KKH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH1_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 5.350e-35
Identity = 177/435 (40.69%), Postives = 217/435 (49.89%), Query Frame = 2 
Query:  263 LFARAEESERIDEAVVDMLFDIDPRDPVVIAILVAVACVVVAVVWFGVNARGKRRVRWAPDPAGGDXXXXXXXXXXXXXXXXXXXXXPVVQRRYNTRGHRITTPGSSGGSSSSRASSPTSRQFRAEATKTVGLTLKQLQLCEVLYDLHAGVVPLRGIKSRAVRDCELSTAKIVRQFKKIKQARQATNGGKVSPSSGSAGTLFRSP-----GTSSVXXXXXXXXXXXXXXXXXXXXXXXGKTVS-PAALTSGTPLLNRASAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-------------------ASALPVSSPESPVMTR-RKKRTPSVRIGSPKSAPIKRTAATAVAASXXXSGGEGDTPSKTPSKRGKPSVLEIARREAQQQVADVASNRAKNLRVGGGSSSSSSRGTK 1489
            LFA+A +    +   V ++ DI+P DP VIA++ AV   +VA  W+    +  +  R     A G                      PV+Q RY+TRGH + TP S    S+ RASSP S    +   K   LT +QL LCEVLYD+  GVVP RGI+S+AV++ +LSTA I RQFK I++ R+   G   S  +  +G    SP       S +                       GK  S  A   S  P+  + +A  XXXXXXXXXXXXXXXXXXX                     XXXXXX                    AS LP S PESP+ TR R  RT SVRIGSPKSAP KR AA   AAS   SG  G     TPSKRGKPSVLEIARRE QQQ+ DVAS RA +LR    S S+++  T+
Sbjct:   36 LFAQAMDPTPPNGEAVGLILDINPLDPAVIAVVGAVVVCLVAATWY--RRKPSKTSRATTTLATGGSAGTVSAATDRTSS-------PVIQSRYSTRGHGVRTPESR--RSARRASSPASANRSSPPGKVTILTPQQLALCEVLYDVFNGVVPSRGIESKAVQEFDLSTADIRRQFKNIQRERELDRGNASSSDNNGSGAPPSSPTPCPAAQSRLTRPSTRRASIAAAAADTKQQPEAGKKPSFRAKKGSRIPVPGKQTAXXXXXXXXXXXXXXXXXXXXXPVSPRSTPVKRGAAARPGTAGXXXXXXXXXXXXXXXXXPSSPSGRSAASDLPSSPPESPMRTRGRNNRTASVRIGSPKSAPTKRAAA---AASSPRSGSGG-----TPSKRGKPSVLEIARREVQQQIVDVASTRASSLRARRSSRSNTNTATR 451
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BLAST of mRNA_P-littoralis_Contig189.85.1 vs. uniprot
Match: D7FJR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJR0_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.650e-20
Identity = 201/454 (44.27%), Postives = 233/454 (51.32%), Query Frame = 2 
Query:  263 LFARAEESERIDEAVVDMLFDIDPRDPVVIAILVAVACVVVAVVWFGVNARGKRRVRWAPDPAGGDXXXXXXXXXXXXXXXXXXXXXPVVQRRYNTRGHRITTPGSSGGSSSSRASSPTSRQFRAEATKTVGLTLKQLQLCEVLYDLHAGVVPLRGIKSRAVRDCELSTAKIVRQFKKIKQARQATNGGKVSPSSGSAGTLFRSPGTSSVXXXXXXXXXXXXXXXXXXXXXXXG---------------------------------------KTVSPAALTSGTPLLNRASAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASALPVSSPESPVMTR-RKKRTPSVRIGSPKSAPIKRTAATAVAASXXXSGGEGDTPSKTPSKRGKPSVLEIARREAQQQVADVASNRAKNLRVGGGSSSSSS----RGTKS 1492
            LFA+A +    +E  V ++FDI+P DP VIA++ AV                              XXXXXXXXX            PVVQ RY+TRGH ++ PGS     + RASSP S    +   K + LT +QL LCEVLYD++ GVVP RGI+S+AV++C+LS A I RQFK IK+AR+       S                  XXXXXXXXXXXXXXXXXXXXXXX                                         T  P      TP+   A+A       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    P+ TR R  RT SVR+GSPKSAP KR    A    XXX          TPSKRGKPSVLEIARREAQQQ  DVAS RA +LR    S S+++    RGTKS
Sbjct:   34 LFAQAVDPTPPNEEAVGLIFDINPLDPAVIAVVGAVV--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVSAATDRRSSPVVQSRYSTRGHGVSPPGSR--RLARRASSPASANRSSRPGKVMILTPQQLALCEVLYDVYNGVVPSRGIESKAVQECDLSPADIRRQFKNIKRARELDRENASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTKKPPVSPRSTPIKRGAAARPGTVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------PMRTRGRNNRTASVRVGSPKSAPTKR----AXXXXXXXXXXXXXXXXXTPSKRGKPSVLEIARREAQQQTVDVASTRASSLRARRSSRSNTNNAMRRGTKS 453
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKH1_9PHAE5.350e-3540.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJR0_ECTSI9.650e-2044.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:395370..398329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1644
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010540.1
Cds size1320
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789904.8669353-UTR-P-littoralis_Contig189:395369..3955181680789904.8669353-UTR-P-littoralis_Contig189:395369..395518Pylaiella littoralis U1_48UTRP-littoralis_Contig189 395370..395518 -
1680789904.9237952-UTR-P-littoralis_Contig189:398154..3983291680789904.9237952-UTR-P-littoralis_Contig189:398154..398329Pylaiella littoralis U1_48UTRP-littoralis_Contig189 398155..398329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789904.880532-CDS-P-littoralis_Contig189:395518..3956241680789904.880532-CDS-P-littoralis_Contig189:395518..395624Pylaiella littoralis U1_48CDSP-littoralis_Contig189 395519..395624 -
1680789904.8941731-CDS-P-littoralis_Contig189:396232..3968551680789904.8941731-CDS-P-littoralis_Contig189:396232..396855Pylaiella littoralis U1_48CDSP-littoralis_Contig189 396233..396855 -
1680789904.9105127-CDS-P-littoralis_Contig189:397563..3981541680789904.9105127-CDS-P-littoralis_Contig189:397563..398154Pylaiella littoralis U1_48CDSP-littoralis_Contig189 397564..398154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.85.1prot_P-littoralis_Contig189.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 395519..398154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.85.1

>prot_P-littoralis_Contig189.85.1 ID=prot_P-littoralis_Contig189.85.1|Name=mRNA_P-littoralis_Contig189.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=440bp
MAGEILHEVTAGLAAEQTGSVGGGGGGGYLFARAEESERIDEAVVDMLFD
IDPRDPVVIAILVAVACVVVAVVWFGVNARGKRRVRWAPDPAGGDGSGDS
GSDDGGGKGNSTPSPSPVVQRRYNTRGHRITTPGSSGGSSSSRASSPTSR
QFRAEATKTVGLTLKQLQLCEVLYDLHAGVVPLRGIKSRAVRDCELSTAK
IVRQFKKIKQARQATNGGKVSPSSGSAGTLFRSPGTSSVSPSPASQPSSC
RATATIKKSPEPGKTVSPAALTSGTPLLNRASAAVAAASPKKPPASPRKS
PVKRSAAARSTPSSPTSGGRGGMPAAKKRLLLASALPVSSPESPVMTRRK
KRTPSVRIGSPKSAPIKRTAATAVAASSSSSGGEGDTPSKTPSKRGKPSV
LEIARREAQQQVADVASNRAKNLRVGGGSSSSSSRGTKS*
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mRNA from alignment at P-littoralis_Contig189:395370..398329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.85.1 ID=mRNA_P-littoralis_Contig189.85.1|Name=mRNA_P-littoralis_Contig189.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2960bp|location=Sequence derived from alignment at P-littoralis_Contig189:395370..398329- (Pylaiella littoralis U1_48)
CGCGGTGTTCTACCCTGCATCTCCCTGTTGGTCTGTCTCTCTCTCGGTTT
GCCGTGGCACAGAGACACACGTGTTCACCGTCGTACTCCGTCCGCCCGCC
GTCGCAGTAGGGCGAAGCTTTTCTAACGCGCGTCGGCGCGCACGTTCACG
TGTGTAAAATCGGCGGGAAGGAAAGATGGCTGGAGAAATTCTTCATGAAG
TAACGGCCGGTCTCGCTGCTGAACAGACGGGCTCGGTGGGGGGAGGAGGA
GGAGGCGGATACCTTTTTGCCCGCGCGGAGGAGTCCGAAAGGATCGACGA
GGCAGTGGTCGATATGCTATTCGATATAGACCCTCGAGACCCCGTTGTGA
TTGCTATCCTTGTTGCTGTCGCCTGCGTCGTTGTCGCTGTGGTATGGTTC
GGGGTAAACGCACGCGGCAAGAGAAGGGTGAGGTGGGCGCCTGATCCTGC
CGGCGGCGACGGCAGCGGCGACAGCGGCAGCGATGATGGCGGCGGTAAGG
GAAACTCAACACCTTCCCCTTCGCCCGTGGTCCAGCGGCGGTACAACACC
CGAGGGCACCGAATTACCACCCCGGGCAGCAGTGGTGGCAGCTCCAGCTC
CCGTGCCTCATCGCCGACTTCTCGTCAGTTCCGCGCCGAGGCGACGAAGA
CCGTGGGGTTAACGCTTAAACAGCTTCAGTTGTGCGAGGTGCTGTACGAC
CTCCACGCCGGAGTGGTGCCGTTACGCGGCATCAAAAGCAGGGCGGTTCG
GGACTGTGAGCTGTCGGTAAGTGTTGGTGTGGTGTCCTTGTTGCAGTTGT
CTGTCGGTGTTGGTACGTGTGGATTGCTACTGGCGGGGAATAATTGTGGT
CGTGGCTTCTCTTTGGTCAGTTTGTCATCCTCAAAATTCCCAGATGCCGA
AAACAAAAAGGAGACGGAGGGGATGATGCTGTTTCGAGTCGTGCATGCAC
GCTCCCTTGCTCTATCCGCAACAAGCGGCAACGTTGCTACTGTTTTTGTT
TGGGTGATCTGGTCTCGCGATGGTGAATACGTGCCTCTACTTTGCACACT
GCGGTAGAGGACCTGGTAGATTTCTGCATGCTGCTGTCGACCACTGAGTG
AGATGAAACGTCCGACTGCGGCCAGGAGATGATACGCATAAGTACTCGTA
TGTGTTCGCAAGATATTTTCACAACTGCTGTAAGTGTCGCAACTGTTGCT
ATGTTATTGTCGACTGCTGGACTTCTTGCAAGTGTCGCATCTGTTGCTAT
GTTATTGTCGACTGCTGGACTTCTTGCGGAACTGCCCGCGAAAAAGGTGA
TGTAGTCACCCCATTTATTTCACACGCAACACACCCCTCGCCGACATGCT
GCTGTGTCACCTTTGCGCGGTTTTCAAAGCTCGATTGTGCCTTTTCTGAC
CCCCACTCTTGGCAAACACCCTACAAAATATTGCCCGGTCCATTGCTTTC
CCCCCCAAAAAAACTAAATTCCAGACCGCTAAGATCGTGCGACAGTTCAA
GAAGATCAAGCAGGCGCGACAGGCGACGAACGGAGGAAAGGTCTCCCCCT
CCAGCGGCAGCGCCGGCACTCTCTTCCGCTCACCGGGCACCTCCAGCGTG
TCGCCGTCGCCGGCGTCGCAGCCCTCCAGCTGCCGCGCTACCGCGACCAT
CAAGAAGAGTCCAGAGCCAGGCAAAACAGTCTCTCCCGCGGCGCTGACCT
CAGGGACCCCTCTCCTGAACCGGGCGTCAGCGGCGGTCGCCGCCGCCTCG
CCCAAGAAGCCGCCGGCGTCTCCGAGAAAATCGCCGGTCAAGCGTAGTGC
CGCCGCGAGGTCGACGCCGTCTTCTCCCACGTCGGGCGGCCGTGGCGGCA
TGCCTGCAGCGAAGAAGCGCCTGCTACTGGCGTCGGCGCTGCCGGTGTCC
TCGCCCGAGTCCCCCGTGATGACTCGCCGCAAAAAGAGGACCCCCTCTGT
GCGCATCGGATCTCCCAAGTCTGCGCCAATCAAGCGAACGGCCGCGACCG
CGGTGGCTGCTTCTTCCTCTTCTTCAGGGGGTGAAGGCGACACGCCTTCC
AAGACGCCTTCCAAGAGGGGAAAACCTTCGGTGCTCGAGATTGCCAGGTA
AAAAAAAAATGTGGATGCATTTGGTCTACTGTATCTGTTGTGTTATGTCT
GTCCTTCGTCTTTCGGTCGTTTGTCACGAGCGGTGGGCGAGGATGATCTT
ACTTCTCTGAAAAGTCAGTTAGTCAGTCCCTAGAGCTGTCGGCCTTTAAC
ATCCATTTGCTAGCTTTGAACATGTAGATAGCAAGTTTTGGCTCTGCAGT
CCTCCATGACATCTTGTCCCTGGTTGCCACGTACATTTCCAATGCCACGA
GGCCTTTGGTGCCGATGCGGGGCTGCGGCGGGCGGCATGGGATCGGGGAA
AAATCAAGGCGTCTTTCGATGCAGTTTACCCCGGATGTGTGGTTACAGGT
TGAGGTAAACAGTTAATCACAAACAAGTATTACATCTACCGCTGGCGTTT
TTCAATATAATATGTACTAGGGCAACGATTTTGGCCTGATCTCCAACCAA
CACGAAACCCACGTGTATTTCGCCAAAACTGAAGTGTTGTACTTCGAGTA
CTTGGGGTACATTTTACTCCTTTTTTGTTTCGTTCTTATCTTTTTTTTCA
AGGCTTGTGTTCTCCGTTTGATCTGAAGCCTTCTCGACCTATCCTGTCCC
TACAGGCGCGAGGCGCAACAGCAGGTGGCCGACGTAGCCAGCAACCGAGC
GAAAAATCTGCGTGTCGGCGGCGGCAGCAGCAGCAGCAGCAGCCGGGGGA
CTAAATCTTGAGCCCGGCCAGCCGCGCCCGTTGGTATCACAACCTGGACC
GACGTCGTTAAATTTATTGCCAAAATGCGGAGGAGGGGGCTGGATGTTTG
CCAGGAGAAATCTGAAGGAAGTGAGAAAGATGGGGTGTGGGATGGGGAAC
TGCAACGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig189:395370..398329-

>mRNA_P-littoralis_Contig189.85.1 ID=mRNA_P-littoralis_Contig189.85.1|Name=mRNA_P-littoralis_Contig189.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1320bp|location=Sequence derived from alignment at P-littoralis_Contig189:395370..398329- (Pylaiella littoralis U1_48)
ATGGCTGGAGAAATTCTTCATGAAGTAACGGCCGGTCTCGCTGCTGAACA
GACGGGCTCGGTGGGGGGAGGAGGAGGAGGCGGATACCTTTTTGCCCGCG
CGGAGGAGTCCGAAAGGATCGACGAGGCAGTGGTCGATATGCTATTCGAT
ATAGACCCTCGAGACCCCGTTGTGATTGCTATCCTTGTTGCTGTCGCCTG
CGTCGTTGTCGCTGTGGTATGGTTCGGGGTAAACGCACGCGGCAAGAGAA
GGGTGAGGTGGGCGCCTGATCCTGCCGGCGGCGACGGCAGCGGCGACAGC
GGCAGCGATGATGGCGGCGGTAAGGGAAACTCAACACCTTCCCCTTCGCC
CGTGGTCCAGCGGCGGTACAACACCCGAGGGCACCGAATTACCACCCCGG
GCAGCAGTGGTGGCAGCTCCAGCTCCCGTGCCTCATCGCCGACTTCTCGT
CAGTTCCGCGCCGAGGCGACGAAGACCGTGGGGTTAACGCTTAAACAGCT
TCAGTTGTGCGAGGTGCTGTACGACCTCCACGCCGGAGTGGTGCCGTTAC
GCGGCATCAAAAGCAGGGCGGTTCGGGACTGTGAGCTGTCGACCGCTAAG
ATCGTGCGACAGTTCAAGAAGATCAAGCAGGCGCGACAGGCGACGAACGG
AGGAAAGGTCTCCCCCTCCAGCGGCAGCGCCGGCACTCTCTTCCGCTCAC
CGGGCACCTCCAGCGTGTCGCCGTCGCCGGCGTCGCAGCCCTCCAGCTGC
CGCGCTACCGCGACCATCAAGAAGAGTCCAGAGCCAGGCAAAACAGTCTC
TCCCGCGGCGCTGACCTCAGGGACCCCTCTCCTGAACCGGGCGTCAGCGG
CGGTCGCCGCCGCCTCGCCCAAGAAGCCGCCGGCGTCTCCGAGAAAATCG
CCGGTCAAGCGTAGTGCCGCCGCGAGGTCGACGCCGTCTTCTCCCACGTC
GGGCGGCCGTGGCGGCATGCCTGCAGCGAAGAAGCGCCTGCTACTGGCGT
CGGCGCTGCCGGTGTCCTCGCCCGAGTCCCCCGTGATGACTCGCCGCAAA
AAGAGGACCCCCTCTGTGCGCATCGGATCTCCCAAGTCTGCGCCAATCAA
GCGAACGGCCGCGACCGCGGTGGCTGCTTCTTCCTCTTCTTCAGGGGGTG
AAGGCGACACGCCTTCCAAGACGCCTTCCAAGAGGGGAAAACCTTCGGTG
CTCGAGATTGCCAGGCGCGAGGCGCAACAGCAGGTGGCCGACGTAGCCAG
CAACCGAGCGAAAAATCTGCGTGTCGGCGGCGGCAGCAGCAGCAGCAGCA
GCCGGGGGACTAAATCTTGA
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