mRNA_P-littoralis_Contig189.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.60.1
Unique NamemRNA_P-littoralis_Contig189.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig189.60.1 vs. uniprot
Match: D7FJQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ2_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 7.540e-178
Identity = 294/481 (61.12%), Postives = 344/481 (71.52%), Query Frame = 1 
Query:  364 LADASDSIDHSKHLPGRGKNNKEIDSELTLAAASARRLSLHVNAWTTPQLSKELEGIWLQAVQAEAKADPQFRHVVKGWKMACESLTNLASTTQQASIVGEADQDAVSNRIRDCQVRGKIVPKVEKAGWWKHRQMRFLMDELQHIERKVAPQASPSTLAARYNLLLARCAEAGAWTTAVSVYRSARGRGVISCDTRGKRQVRGPSSLEPFVYQHLLRAAKNASPPQPRAAMLVLREMRLRGEQPAASHYNLVVSACTRAAAVAASTSSLTPLRT--CEADSAGSQGDLRQIARNADGEERSRVGGDGANHGSGTRNGAAVAIDNGPPASAKRGGDHGDAVLRNVPPVKVALATARTDREKDGTKLRYLLTEGDEAIECQEAETAGNSWRLALEVVASMRKRGVVPTDVTFWSLVECCRCAAAAPSPKLAGGGEVGKGSTPAEVYTALKEAGIPLQFCYQAGLRNALKGGRCFPEYVAEITR 1800
            + DASD ID+ K L GR K +K ++ EL LAAA+ARRLSLHVNAWTT +L +ELE IWLQAV+AEA  D QFRHVV  W+ AC +L+ L+ T Q+ SI G+A++ A + RIRDCQ+R  +  K EKAGWWK RQMRFL +EL+HIERKVAP A PS LAARYNLLL RCAE G W TAVS YRSAR RGVI+     +R   G  SLEP VYQHLLRAAKNA+PPQPRAA+LVLREMRLRGE+PAA+HYNLVVSAC RAAAVAASTS+L PL     E  +   +  L Q    ADG ++   G  GA H     +G  VA +N  P  AK    H + V  N+  +K     A+ D E    +   L T GD A+EC+ AE AG +WRLAL+V+A MRKRGV PT VTF +LVECCRCAAAA    + GG  +GKGSTPAEVYTALKEAGIP +FCYQAGLRNAL GGRCFP YVAEI+R
Sbjct:    1 MKDASDGIDNFKQLSGREKTSKAVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDSQFRHVVTEWEAACAALSRLSRTAQEDSIAGQAERHASATRIRDCQIRAGVGSKAEKAGWWKQRQMRFLREELRHIERKVAPLADPSHLAARYNLLLVRCAEVGGWATAVSAYRSARARGVITKPLSNRRDAVGSFSLEPLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALMPLDRDDTEGHAVLCEDRLYQGIGGADGHKKE--GNCGAIHLESDSSGGVVATENETPKPAKLCSGHEEGVEENMR-LKGTAFGAKVDVEDLPDRCCLLPTAGD-AVECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYTALKEAGIPARFCYQAGLRNALNGGRCFPGYVAEISR 477
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BLAST of mRNA_P-littoralis_Contig189.60.1 vs. uniprot
Match: A0A6H5L7G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G8_9PHAE)

HSP 1 Score: 498 bits (1282), Expect = 6.090e-169
Identity = 282/486 (58.02%), Postives = 341/486 (70.16%), Query Frame = 1 
Query:  364 LADASDSIDHSKHLPGRGKNNKEIDSELTLAAASARRLSLHVNAWTTPQLSKELEGIWLQAVQAEAKADPQFRHVVKGWKMACESLTNLASTTQQASIVGEADQDAVSNRIRDCQVRGKIVPKVEKAGWWKHRQMRFLMDELQHIERKVAPQASPSTLAARYNLLLARCAEAGAWTTAVSVYRSARGRGVISCDTRGKRQVRGPSSLEPFVYQHLLRAAKNASPPQPRAAMLVLREMRLRGEQPAASHYNLVVSACTRAAAVAASTSSLTPLRTCEADSAGSQGD-------LRQIARNADGEERSRVGGDGANHGSGTRNGAAVAIDNGPPASAKRGGDHGDAVLRNVPPVKVALATARTDREKDGTKLRYLLTEGDEAIECQEAETAGNSWRLALEVVASMRKRGVVPTDVTFWSLVECCRCAAAAPSPKLAGGGEVGKGSTPAEVYTALKEAGIPLQFCYQAGLRNALKGGRCFPEYVAEITR 1800
            + D SD ID+ K LPGR K +K ++ EL LAAA+ARRLSLHVNAWTT +L +ELE IWLQAV+AEA  DPQF+HVV  W+ AC +L+ L+ T Q+ S+ G+A++ A + RIRDC++R  +  K +K GWWK RQMRFL +EL+HIERKVAP A PS L ARYNLLLARCAE G W  AVS Y+SAR RGVI+     +R      SL+P VYQHLLRAAKNA+PPQPRAA+ VLREMRLRGE+P A+HYNLVVSAC RAAAVAASTS+L PL     D  G++G        L Q    ADG ++   G  GA H     +G  VA +N  P  AK G  H   V +N+   + A   A+ D E    +   L T GD A++C+ AE AG+SWRLAL+V+A MR  GV PT VTF +LVECCRCAAAA    + GG  +GKGSTPAEVY+ALKEAGIP +FCYQAGL NA+KG RCFP YVAEI+R
Sbjct:    1 MKDVSDGIDNFKQLPGREKTSKTVEQELALAAAAARRLSLHVNAWTTAELLQELERIWLQAVRAEATIDPQFQHVVTEWETACAALSRLSRTAQEDSVTGQAERHASATRIRDCRIRAGVGSKAKKTGWWKQRQMRFLREELRHIERKVAPLADPSRLVARYNLLLARCAEVGGWAIAVSAYQSARARGVITKPMNNRRDANPSFSLKPLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVAASTSALMPL-----DRDGTEGHAVLREDRLCQDIGGADGHKKE--GFCGAIHLESDSSGGVVATENETPKPAKLGSGH-KCVAKNMRLKQTAFG-AKVDVEDVPDRCCLLPTAGD-AMQCRGAEAAGDSWRLALDVIADMRMSGVTPTLVTFKTLVECCRCAAAASVLNIGGGEGLGKGSTPAEVYSALKEAGIPTRFCYQAGLGNAVKGRRCFPAYVAEISR 476
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJQ2_ECTSI7.540e-17861.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7G8_9PHAE6.090e-16958.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:294032..297044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1803
Hectar predicted targeting categoryother localisation
Exons4
Cds size1803
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789903.7636771-CDS-P-littoralis_Contig189:294031..2949891680789903.7636771-CDS-P-littoralis_Contig189:294031..294989Pylaiella littoralis U1_48CDSP-littoralis_Contig189 294032..294989 -
1680789903.7739606-CDS-P-littoralis_Contig189:295186..2956991680789903.7739606-CDS-P-littoralis_Contig189:295186..295699Pylaiella littoralis U1_48CDSP-littoralis_Contig189 295187..295699 -
1680789903.7866578-CDS-P-littoralis_Contig189:296075..2962721680789903.7866578-CDS-P-littoralis_Contig189:296075..296272Pylaiella littoralis U1_48CDSP-littoralis_Contig189 296076..296272 -
1680789903.8174524-CDS-P-littoralis_Contig189:296909..2970441680789903.8174524-CDS-P-littoralis_Contig189:296909..297044Pylaiella littoralis U1_48CDSP-littoralis_Contig189 296910..297044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.60.1prot_P-littoralis_Contig189.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 294032..297044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.60.1

>prot_P-littoralis_Contig189.60.1 ID=prot_P-littoralis_Contig189.60.1|Name=mRNA_P-littoralis_Contig189.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=601bp
QIAQKEAEVADAVLQARKATDSRVRATGGRCAAGNELEEALLELTILKER
SHATAESSLKTKLVLEQDVSAKRLDLLAASPPFILALEQALVTVASVDQA
ASSGPHAKLRSGRWSSTLKSLLADASDSIDHSKHLPGRGKNNKEIDSELT
LAAASARRLSLHVNAWTTPQLSKELEGIWLQAVQAEAKADPQFRHVVKGW
KMACESLTNLASTTQQASIVGEADQDAVSNRIRDCQVRGKIVPKVEKAGW
WKHRQMRFLMDELQHIERKVAPQASPSTLAARYNLLLARCAEAGAWTTAV
SVYRSARGRGVISCDTRGKRQVRGPSSLEPFVYQHLLRAAKNASPPQPRA
AMLVLREMRLRGEQPAASHYNLVVSACTRAAAVAASTSSLTPLRTCEADS
AGSQGDLRQIARNADGEERSRVGGDGANHGSGTRNGAAVAIDNGPPASAK
RGGDHGDAVLRNVPPVKVALATARTDREKDGTKLRYLLTEGDEAIECQEA
ETAGNSWRLALEVVASMRKRGVVPTDVTFWSLVECCRCAAAAPSPKLAGG
GEVGKGSTPAEVYTALKEAGIPLQFCYQAGLRNALKGGRCFPEYVAEITR
*
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mRNA from alignment at P-littoralis_Contig189:294032..297044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.60.1 ID=mRNA_P-littoralis_Contig189.60.1|Name=mRNA_P-littoralis_Contig189.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3013bp|location=Sequence derived from alignment at P-littoralis_Contig189:294032..297044- (Pylaiella littoralis U1_48)
CAGATAGCGCAGAAAGAGGCCGAAGTGGCCGATGCTGTCCTTCAAGCACG
GAAAGCAACCGACAGTCGAGTACGGGCAACCGGCGGGAGATGCGCCGCAG
GAAACGAGCTCGAAGAAGCCCTACTCGAGCTCACAGTGAGAAGCGAGTCG
CATATTATACCGTGCTGTTTGTACAGCACAACAAAGCGTACGCACTCAGC
AACGGTGCACTGGTTTTTCATACACCATAAACGTATGCGCATGTATGCGA
AATCGGCTGGTTGTGATGACTCACCAACAGGCACCTGGTACAGAACTGTA
GTACATACAGCTGCAGTAGAGAGACGCTAAGAGGAACGGTTGGCCGCGAA
GCTATTTCGTACCAAGCTCTGGAAAGTCATCGAGAAGAGCAGTTAGTGTA
TTCGGGTTGATTAGAATGACTGTTGACGACGAGTAGGTAAAACAAAGTCC
TGACAGTAGGTTTACCGCGTGTGCACTTCACTGATTCATCGCTGCTAAAA
ACGTACGTGGCGTTGTGGCATGCTCTGGACATGAACAGTACCAAGAGGTG
GCACCCAAGATCGTTCTCGCACAGGATAAGGGTCTTGAGTGTTACTGTGT
ACTACAACAGCACAGTACTGTACAGCAAAAAACAGCCATAGGCATTACAG
TAGACATACTAATTACATCTGATGGCGGACTCAACACCCATGCAGATGAA
TTTGATGCAGTAGCTATTTGATCTACGAATCACCCGCAAGACTAAAATAT
CCAAGCTTAACTACTGGAACAGATCCTGAAGGAAAGGAGCCATGCTACAG
CTGAGAGCTCGTTGAAGACCAAACTTGTTTTGGAACAGGACGTCAGCGCC
AAACGTCTAGACCTGCTCGCTGCTAGTCCGCCCTTCATCCTCGCGCTGGA
ACAGGCTTTGGTAACCGTTGCAAGCGTGGATCAGGCTGCCAGTTCCGGAC
CACATGCCAAACTAAGAAGGTCGACAGCAAATTACCGTGGGTTCGATATT
CCATTCGGCGCTTTGGAAACGTGGACGTGGAAGGGTGGACGTGCACGTTC
ACATATACACGTTTTTGAAATAGTCCAACGGCGGGTGCACTTTTGCAATT
GATCACTACGTACGAACCAGGGGGGGGCGGGGGAGGGGTCGGGGTGACCG
GGCTTACACCACACGTTCATATGTCCAGAGACAAAAAAGCACTCCTATTC
CTGCAACGCACAAGTTTGGCGTCGACAACGCCCCCAACGGAGTGAGATTA
GTGGGCATTCTCAAGCCAAGGCAGAAGTAAGGTTGGCTCGCGATAAAGCA
AAGGCATAAGCTCCGCGACCTTGACAATGCACGCCCATGTAACAGTGGCA
GATGGAGCTCTACCCTCAAAAGCCTCCTGGCGGACGCCTCAGACAGCATT
GACCATTCCAAGCACCTTCCCGGCCGCGGAAAAAACAACAAGGAGATCGA
CAGCGAGCTTACTCTAGCCGCCGCGTCTGCGCGACGTCTATCCCTGCACG
TCAACGCATGGACCACGCCCCAACTTTCAAAAGAGCTGGAAGGCATCTGG
CTCCAGGCCGTTCAAGCCGAAGCAAAAGCAGACCCGCAGTTTCGACACGT
TGTCAAGGGATGGAAAATGGCCTGCGAATCTCTCACGAATTTAGCCTCGA
CAACCCAACAAGCATCGATCGTCGGAGAGGCAGACCAGGATGCCGTGAGC
AACAGGATACGCGACTGCCAAGTTCGAGGGAAGATCGTGCCGAAAGTCGA
GAAGGCGGGGTGGTGGAAGCATCGGCAAATGCGTTTTCTGATGGACGAAT
TACAGCACATCGAGCGCAAGGTGGCCCCACAAGCGAGCCCCTCTACTCTA
GCGGCTAGGTCAGTACTCCGAGTATGTCACACCGAGAAAAGAATCAGCGA
ATGGTTTGCAAAGTTTGTAAGTATAACCACGGTAAGTCCTGAAAGCACCT
GCACAGCGGATTACAACCCTGAAGCAAAGGAAATATTCTGCTACGTTTCG
TACTTCCTCCTTTCATCTCTGTATGACTCTCTATCCGGCTTCCCCTCCCA
CCCAGATACAATCTCCTACTAGCCAGATGCGCGGAGGCGGGGGCCTGGAC
GACGGCCGTTTCCGTTTATCGATCAGCCAGAGGCCGAGGTGTCATCTCTT
GTGATACAAGAGGTAAACGTCAGGTTAGAGGGCCTTCTTCCCTCGAACCC
TTCGTGTACCAACACCTTCTTCGCGCCGCCAAGAACGCAAGCCCCCCGCA
ACCGCGTGCTGCTATGCTCGTGCTGCGCGAAATGAGGCTCAGAGGCGAAC
AACCTGCGGCTTCTCACTATAATCTCGTTGTCAGCGCCTGTACTCGTGCT
GCCGCGGTTGCGGCGTCTACCTCGTCCCTGACGCCCTTAAGAACCTGCGA
GGCCGACAGCGCTGGCTCGCAGGGCGACTTGAGACAGATTGCCCGAAACG
CTGACGGGGAAGAGCGGAGTAGGGTGGGAGGGGATGGTGCGAATCACGGC
AGCGGCACAAGAAACGGCGCCGCCGTGGCCATAGACAACGGACCGCCGGC
GTCCGCAAAACGTGGCGGTGATCATGGGGACGCAGTGCTTCGCAACGTTC
CGCCAGTAAAGGTGGCCCTTGCGACCGCAAGAACGGATAGGGAAAAGGAT
GGTACAAAGCTCCGCTACTTGCTGACCGAAGGGGACGAGGCCATCGAGTG
CCAGGAGGCTGAGACTGCCGGGAACTCGTGGCGCCTAGCTTTGGAAGTGG
TCGCAAGCATGCGCAAGAGGGGGGTCGTTCCGACGGACGTGACATTCTGG
AGTCTCGTGGAGTGTTGCCGCTGTGCCGCAGCTGCACCTTCCCCTAAACT
TGCCGGTGGTGGGGAAGTCGGTAAGGGTTCTACCCCTGCGGAGGTGTACA
CGGCTTTGAAGGAGGCCGGGATCCCGTTGCAATTTTGCTATCAGGCTGGC
CTAAGGAATGCGTTGAAGGGAGGAAGGTGCTTTCCTGAATATGTTGCAGA
GATAACTCGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig189:294032..297044-

>mRNA_P-littoralis_Contig189.60.1 ID=mRNA_P-littoralis_Contig189.60.1|Name=mRNA_P-littoralis_Contig189.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1803bp|location=Sequence derived from alignment at P-littoralis_Contig189:294032..297044- (Pylaiella littoralis U1_48)
CAGATAGCGCAGAAAGAGGCCGAAGTGGCCGATGCTGTCCTTCAAGCACG
GAAAGCAACCGACAGTCGAGTACGGGCAACCGGCGGGAGATGCGCCGCAG
GAAACGAGCTCGAAGAAGCCCTACTCGAGCTCACAATCCTGAAGGAAAGG
AGCCATGCTACAGCTGAGAGCTCGTTGAAGACCAAACTTGTTTTGGAACA
GGACGTCAGCGCCAAACGTCTAGACCTGCTCGCTGCTAGTCCGCCCTTCA
TCCTCGCGCTGGAACAGGCTTTGGTAACCGTTGCAAGCGTGGATCAGGCT
GCCAGTTCCGGACCACATGCCAAACTAAGAAGTGGCAGATGGAGCTCTAC
CCTCAAAAGCCTCCTGGCGGACGCCTCAGACAGCATTGACCATTCCAAGC
ACCTTCCCGGCCGCGGAAAAAACAACAAGGAGATCGACAGCGAGCTTACT
CTAGCCGCCGCGTCTGCGCGACGTCTATCCCTGCACGTCAACGCATGGAC
CACGCCCCAACTTTCAAAAGAGCTGGAAGGCATCTGGCTCCAGGCCGTTC
AAGCCGAAGCAAAAGCAGACCCGCAGTTTCGACACGTTGTCAAGGGATGG
AAAATGGCCTGCGAATCTCTCACGAATTTAGCCTCGACAACCCAACAAGC
ATCGATCGTCGGAGAGGCAGACCAGGATGCCGTGAGCAACAGGATACGCG
ACTGCCAAGTTCGAGGGAAGATCGTGCCGAAAGTCGAGAAGGCGGGGTGG
TGGAAGCATCGGCAAATGCGTTTTCTGATGGACGAATTACAGCACATCGA
GCGCAAGGTGGCCCCACAAGCGAGCCCCTCTACTCTAGCGGCTAGATACA
ATCTCCTACTAGCCAGATGCGCGGAGGCGGGGGCCTGGACGACGGCCGTT
TCCGTTTATCGATCAGCCAGAGGCCGAGGTGTCATCTCTTGTGATACAAG
AGGTAAACGTCAGGTTAGAGGGCCTTCTTCCCTCGAACCCTTCGTGTACC
AACACCTTCTTCGCGCCGCCAAGAACGCAAGCCCCCCGCAACCGCGTGCT
GCTATGCTCGTGCTGCGCGAAATGAGGCTCAGAGGCGAACAACCTGCGGC
TTCTCACTATAATCTCGTTGTCAGCGCCTGTACTCGTGCTGCCGCGGTTG
CGGCGTCTACCTCGTCCCTGACGCCCTTAAGAACCTGCGAGGCCGACAGC
GCTGGCTCGCAGGGCGACTTGAGACAGATTGCCCGAAACGCTGACGGGGA
AGAGCGGAGTAGGGTGGGAGGGGATGGTGCGAATCACGGCAGCGGCACAA
GAAACGGCGCCGCCGTGGCCATAGACAACGGACCGCCGGCGTCCGCAAAA
CGTGGCGGTGATCATGGGGACGCAGTGCTTCGCAACGTTCCGCCAGTAAA
GGTGGCCCTTGCGACCGCAAGAACGGATAGGGAAAAGGATGGTACAAAGC
TCCGCTACTTGCTGACCGAAGGGGACGAGGCCATCGAGTGCCAGGAGGCT
GAGACTGCCGGGAACTCGTGGCGCCTAGCTTTGGAAGTGGTCGCAAGCAT
GCGCAAGAGGGGGGTCGTTCCGACGGACGTGACATTCTGGAGTCTCGTGG
AGTGTTGCCGCTGTGCCGCAGCTGCACCTTCCCCTAAACTTGCCGGTGGT
GGGGAAGTCGGTAAGGGTTCTACCCCTGCGGAGGTGTACACGGCTTTGAA
GGAGGCCGGGATCCCGTTGCAATTTTGCTATCAGGCTGGCCTAAGGAATG
CGTTGAAGGGAGGAAGGTGCTTTCCTGAATATGTTGCAGAGATAACTCGG
TGA
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