mRNA_P-littoralis_Contig189.56.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.56.1
Unique NamemRNA_P-littoralis_Contig189.56.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig189.56.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-5
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   88 VGSSVDSVVAQSSFDDDGATFKETTFGHAVAERLLDPLSWCTVHAVQRCTVKEKLVSH 261
            +GSS D+VV  S+FDD GA+ +ET+   A AE + DP   CTVHAVQ  TV+ +L+ H
Sbjct: 1280 IGSSADTVVVASAFDD-GASLEETSLCRAEAENVFDPPGSCTVHAVQGRTVEGRLIIH 1336
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2B8_9PHAE2.150e-551.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:240264..240861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFQ2
Model size598
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.65e-10
EggNOG OGs2E3IK@1|root,2SAKM@2759|Eukaryota
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789902.7643642-UTR-P-littoralis_Contig189:240263..2405431680789902.7643642-UTR-P-littoralis_Contig189:240263..240543Pylaiella littoralis U1_48UTRP-littoralis_Contig189 240264..240543 -
1680789902.7836113-UTR-P-littoralis_Contig189:240855..2408611680789902.7836113-UTR-P-littoralis_Contig189:240855..240861Pylaiella littoralis U1_48UTRP-littoralis_Contig189 240856..240861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789902.7733107-CDS-P-littoralis_Contig189:240543..2408551680789902.7733107-CDS-P-littoralis_Contig189:240543..240855Pylaiella littoralis U1_48CDSP-littoralis_Contig189 240544..240855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.56.1prot_P-littoralis_Contig189.56.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 240544..240855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.56.1

>prot_P-littoralis_Contig189.56.1 ID=prot_P-littoralis_Contig189.56.1|Name=mRNA_P-littoralis_Contig189.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MGVVSAQQCIETSGSQERCTRTTPSTFVGSSVDSVVAQSSFDDDGATFKE
TTFGHAVAERLLDPLSWCTVHAVQRCTVKEKLVSHPSCSALDEIIFPGNR
IIR*
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mRNA from alignment at P-littoralis_Contig189:240264..240861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.56.1 ID=mRNA_P-littoralis_Contig189.56.1|Name=mRNA_P-littoralis_Contig189.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=598bp|location=Sequence derived from alignment at P-littoralis_Contig189:240264..240861- (Pylaiella littoralis U1_48)
GACAACATGGGGGTGGTGAGTGCACAGCAGTGTATCGAGACCTCTGGAAG
TCAGGAAAGGTGCACAAGAACCACGCCTAGTACTTTCGTTGGTTCGTCGG
TTGATTCCGTTGTTGCGCAGAGTAGCTTCGACGACGATGGCGCCACCTTC
AAGGAAACCACCTTCGGTCACGCCGTTGCTGAGAGATTATTGGACCCCCT
GAGTTGGTGCACGGTGCATGCGGTTCAAAGATGCACGGTGAAGGAAAAAT
TGGTCTCCCACCCATCATGCTCGGCACTGGATGAAATTATTTTTCCAGGC
AATCGGATAATTCGGTAAACTTCGTTGCGTCTGGCGGTTCGGTCTTGTCT
TATTCTCATACGTAGTTCTGGTCGATCCGGAGACAACCACCACGATAGAG
CAGAATGATGAGTGGATGAAGACGACAGCGATTGAGATGGACGAATGGCA
TGCAACTTGCGACATCGCTCCTTCGTTGGCGTCCATCACCCTACGACCCA
CTTCGAAGTACACCCTAATGTAGAGAGGTAGCTGTGTCGTGGTGTCCTTC
GAATTTTGCTTTTGGCGCAATACGGAGTATGTCAGAGTGAAATGTACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig189:240264..240861-

>mRNA_P-littoralis_Contig189.56.1 ID=mRNA_P-littoralis_Contig189.56.1|Name=mRNA_P-littoralis_Contig189.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig189:240264..240861- (Pylaiella littoralis U1_48)
ATGGGGGTGGTGAGTGCACAGCAGTGTATCGAGACCTCTGGAAGTCAGGA
AAGGTGCACAAGAACCACGCCTAGTACTTTCGTTGGTTCGTCGGTTGATT
CCGTTGTTGCGCAGAGTAGCTTCGACGACGATGGCGCCACCTTCAAGGAA
ACCACCTTCGGTCACGCCGTTGCTGAGAGATTATTGGACCCCCTGAGTTG
GTGCACGGTGCATGCGGTTCAAAGATGCACGGTGAAGGAAAAATTGGTCT
CCCACCCATCATGCTCGGCACTGGATGAAATTATTTTTCCAGGCAATCGG
ATAATTCGGTAA
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