mRNA_P-littoralis_Contig189.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig189.36.1
Unique NamemRNA_P-littoralis_Contig189.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: D7FJP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP5_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 7.360e-88
Identity = 164/294 (55.78%), Postives = 186/294 (63.27%), Query Frame = 3 
Query:  147 SGPPDATLRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSDSIMPKLGSYSKAVLAGRQTVVKFRGDGPPESVRVYLVNVRLPNVGTDLLITANVPYPDEVAAARSMASAECFFPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAVSAAAGDAVASDTSARGVGQGGGSGRPLSSSDEGDGG-HGDPG----CDVGIAALRSLLHSFSILDWSLFG 1013
            S   DATLRKLFGGAMEC LPAAY DVSDLRQVPDHQE F S+EDGISI+IEVLSFEA+I+ +     DGASARHFF+DL AANGA+SSACD+C DLSDSIMPKL SY+K+ LAGRQTV KFR D PP++VR+YLVNVRLPNVGTDLLIT NVP PD+  A R+MA AECF                                                  P  SAA     A+     GV +  GSG   +   EG G  H  PG     D+G+AALR+LL SF+ILDWSLFG
Sbjct:    4 SAGDDATLRKLFGGAMECLLPAAYVDVSDLRQVPDHQEVFASKEDGISIVIEVLSFEADINMDEQARKDGASARHFFDDLAAANGATSSACDFCGDLSDSIMPKLASYTKSALAGRQTVAKFRQDAPPDAVRLYLVNVRLPNVGTDLLITVNVPCPDQDTAVRTMAGAECFCSGPSRHTAGANEEISTGAPLIDANKTSETASGAHAAADGTAAGTDK---PFKSAADFSPEATVDGVGGVDKPEGSGEIEAGVGEGKGEKHSSPGGGDDVDLGVAALRTLLQSFAILDWSLFG 294
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: W7TBW4_9STRA (Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBW4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.850e-23
Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3 
Query:  177 LFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSD-SIMPKLGSYSKAVLAGRQTVVKFRG-DGPPESVRVYLVNVRLPNVGTDLLITANVPYPDEVAAARSMASA 650
            LFGGA+   LPA+++  SD+RQVPD+QE F+      S+I+E+L  E +    L+      +A +FF DL   N A ++   Y  DLS  S++P L +Y    L G QTV KF   D     VR+YLVNVRL   GTD+L+T N+P   +  AA S  +A
Sbjct:   17 LFGGAITISLPASFSSASDIRQVPDNQEVFIDDASDASLILELLDLERD-KEGLE------AATYFFNDLAEHNDAQNATIQYKEDLSGTSLVPNLAAYPTYALVGTQTVSKFHAADAALLPVRIYLVNVRLQQTGTDVLLTLNLPALAQAPAAASFNAA 169
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: A0A2R5GLU9_9STRA (Ran guanine nucleotide release factor n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLU9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.200e-23
Identity = 68/166 (40.96%), Postives = 97/166 (58.43%), Query Frame = 3 
Query:  171 RKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCA----DLSDSIMPKLGSYSKA--VLAGRQTVVKFRGDGPPESVRVYLVNVRLPNVGTDLLITANVPYPDEVAAARSMASA 650
            R+LFGGA+   LPAA+ADVS +R+VPDHQE F  +    SII+EVL   A  S+E  G       ++FFEDL  ANG+ ++  +Y        S   + K+   + A  V+ G Q V KFR +    ++RV+L N+RLP   TD+LI+ N P   +V+A  S A++
Sbjct:   32 RELFGGAITASLPAAFADVSTVREVPDHQEVFADQNTDRSIIVEVLELTASESNETAG-------KYFFEDLAGANGSEATVIEYSEVGVPATSVPCLDKVADPAAASNVVIGTQVVAKFR-ESAKNTIRVFLCNIRLPKYTTDILISLNAPV--KVSAESSSAAS 187
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: K3WBQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBQ5_GLOUD)

HSP 1 Score: 101 bits (251), Expect = 5.090e-22
Identity = 63/167 (37.72%), Postives = 101/167 (60.48%), Query Frame = 3 
Query:  171 RKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSDSIM-----PKLGS-YSKAVLAGRQTVVKFRGDGPPESV-RVYLVNVRLPNVGTDLLITANVPYPDEVAAARSMASA 650
            R LFGGA+ C +P  +ADVS  RQVPD+QE F + +    +I+E+L +E+++        D  SAR FF ++ A+NG S    D  + L   ++     P + + ++ ++L G Q V KF+ D   ++V RVYL N+RLP+V TD++I+ +VP   +++AA S A +
Sbjct:    3 RALFGGALSCAIPEGFADVSSFRQVPDNQEVFANAQTDQCVIVELLQYESDVC-------DDESARFFFNEIAASNGCSP---DDVSILHSELLAANDGPAIAAAHTNSILVGDQRVAKFKEDESAKNVVRVYLGNIRLPSVTTDVVISVSVPL--QISAASSSAGS 157
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: A0A662WTL8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTL8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.700e-22
Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 3 
Query:  168 LRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSDSIMPK-----LGSYSKAVLAGRQTVVKFR-GDGPPESVRVYLVNVRLPNVGTDLLITANVP 608
            L  LFGGA+ C +P  +ADVS  RQVPD+QE F +      +I+E+L FE+ +S       D ASA++FF ++  ANG      +    LS+ +  K      G +S  V+ G Q V KF+ GD     VRVYL N+RLP V TD++++ + P
Sbjct:   27 LHPLFGGALSCEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQFESSVS-------DAASAQYFFNEIAQANGCGPD--EVTVLLSEQVDAKNAPVISGEHSTTVIVGDQRVAKFKEGDDAKNVVRVYLGNIRLPGVTTDVVLSVSAP 170
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: A0A7S3MHE7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHE7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.990e-20
Identity = 62/154 (40.26%), Postives = 92/154 (59.74%), Query Frame = 3 
Query:  162 ATLRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLS--DSIMPKLGS-YSKAVLAGRQTVVKF--RGDGPPESVRVYLVNVRLPNVGTDLLITANVP 608
            A+ R LFGGA+E  L A Y DVSD+RQVPDHQE F+ +++ +SII+E+L +E ++   +       + RH++ DL   N A+ +     A L+  +S +P LG    K  + G+QTV K+  R     + + V  V VRL NVGT+L I+ N+P
Sbjct:   15 ASKRDLFGGAIEANLGADYLDVSDVRQVPDHQEVFIHKDNEVSIIVELLQYENDLEDSI------GAVRHYYNDLVEVNEAAENKILSEAVLTAEESFLPNLGKDVVKMAIVGKQTVGKYSTRPGMQIDHIYVVFVLVRLVNVGTELFISMNIP 162
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: M4B727_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B727_HYAAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.050e-19
Identity = 58/153 (37.91%), Postives = 83/153 (54.25%), Query Frame = 3 
Query:  168 LRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSDSIMPKL-----GSYSKAVLAGRQTVVKFRGDGPPESV-RVYLVNVRLPNVGTDLLITANVP 608
            LR LFGGA+ C +P  +ADVS  RQVPD+QE F +     S+IIE+L +E  +S       D  S R+FF +L  +NG            +D +           ++  ++ G Q V KF+ D   ++V RVYL NVRLP V TD+++T + P
Sbjct:    2 LRPLFGGALSCDIPEGFADVSSFRQVPDNQEVFANAATDQSVIIELLQYEENVS-------DAESGRYFFNELAQSNGCGPDEVTVLLRETDEMQHMSHVSIDAPHTTQLIVGDQHVAKFKEDDAAKNVVRVYLGNVRLPGVTTDVILTVSTP 147
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: H3G8W9_PHYRM (Uncharacterized protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=H3G8W9_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 9.900e-19
Identity = 59/153 (38.56%), Postives = 87/153 (56.86%), Query Frame = 3 
Query:  168 LRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSAC----DYCADLSDSIMPKLGS-YSKAVLAGRQTVVKFR-GDGPPESVRVYLVNVRLPNVGTDLLITANVP 608
            LR LFGGA+ C +P  +ADVS  RQVPD+QE F +      +I+E+L +E  +S       D  SAR+FF +L  +NG          +  AD  ++  P + + ++  ++ G Q V KF+ GD     VRVYL NVRLP V TD++++ + P
Sbjct:    2 LRPLFGGALICEIPEGFADVSSFRQVPDNQEVFANAATDQCVIVELLQYEESVS-------DARSARYFFNELAQSNGCGPDEVTVLLEAAADARNA--PAVDAPHTTQLIVGDQRVAKFKEGDHAKNVVRVYLGNVRLPGVTTDVVLSMSAP 145
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: A0A329SMJ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SMJ2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.700e-18
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = 3 
Query:  168 LRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSDSIMPKLGS------YSKAVLAGRQTVVKFR-GDGPPESVRVYLVNVRLPNVGTDLLITANVP 608
            LR LFGGA+ C +P  +ADVS  RQVPD+QE F +      +I+E+L +E  ++       D  SA +FF ++  +NG      +    L + +  +L        Y+  ++ G Q V KF+ GD     VR+YL N+RLP V TD++++ + P
Sbjct:    2 LRPLFGGALSCEIPEGFADVSSFRQVPDNQEVFANATTDQCVIVELLQYEESVA-------DAQSAHYFFNEIAQSNGCGPD--EVTVLLEEKVDGELAPTDIDAPYTTQLIVGDQRVAKFKEGDHAKNVVRIYLGNIRLPGVTTDVVLSVSAP 146
[Close]
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Match: A0A0P1AXJ4_PLAHL (RAN guanine nucleotide release factor n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXJ4_PLAHL)

HSP 1 Score: 90.9 bits (224), Expect = 3.580e-18
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 3 
Query:  168 LRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISIIIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSDSIMPKLGS----YSKAVLAGRQTVVKFR-GDGPPESVRVYLVNVRLPNVGTDLLITANVP 608
            LR LFGGA+ C +P  + DVS  RQVPD+QE F +      +I+E+L FE  +        D  SAR+FF ++  +NG      +    L +    KL      +   ++ G Q V KF+ GD     VRVYL N+RLP+V TD++++ + P
Sbjct:    2 LRLLFGGALSCEIPEDFVDVSSFRQVPDNQEVFANATTDQCVIVELLQFEESVD-------DNQSARYFFNEIAQSNGCGPD--EVAVLLEEKTDTKLTGVDVPHIMRIIVGDQCVAKFKEGDHAKNVVRVYLGNIRLPSVTTDVVLSVSAP 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJP5_ECTSI7.360e-8855.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TBW4_9STRA3.850e-2341.88Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich n=1 T... [more]
A0A2R5GLU9_9STRA9.200e-2340.96Ran guanine nucleotide release factor n=1 Tax=Hond... [more]
K3WBQ5_GLOUD5.090e-2237.72Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WTL8_9STRA6.700e-2239.87Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S3MHE7_9STRA1.990e-2040.26Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
M4B727_HYAAE1.050e-1937.91Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3G8W9_PHYRM9.900e-1938.56Uncharacterized protein n=16 Tax=Peronosporaceae T... [more]
A0A329SMJ2_9STRA2.700e-1835.06Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0P1AXJ4_PLAHL3.580e-1836.84RAN guanine nucleotide release factor n=1 Tax=Plas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig189contigP-littoralis_Contig189:184416..188634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJP5
Preferred nameRANGRF
PFAMsMog1
Model size1016
Max annot lvl2759|Eukaryota
KEGG koko:K17495
Hectar predicted targeting categoryother localisation
GOsGO:0001947,GO:0002009,GO:0002027,GO:0002028,GO:0003007,GO:0003008,GO:0003013,GO:0003015,GO:0003143,GO:0003254,GO:0003674,GO:0005085,GO:0005087,GO:0005088,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005791,GO:0005829,GO:0005886,GO:0005901,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006888,GO:0006913,GO:0006937,GO:0006942,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0008565,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010467,GO:0010646,GO:0010959,GO:0010968,GO:0012505,GO:0014704,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016192,GO:0016247,GO:0016973,GO:0017016,GO:0017038,GO:0017080,GO:0019899,GO:0022898,GO:0023051,GO:0023052,GO:0030054,GO:0031110,GO:0031113,GO:0031267,GO:0031291,GO:0031503,GO:0031974,GO:0031981,GO:0032271,GO:0032409,GO:0032412,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032880,GO:0032886,GO:0032970,GO:0033036,GO:0033043,GO:0033365,GO:0034504,GO:0034613,GO:0034762,GO:0034765,GO:0035050,GO:0035239,GO:0035295,GO:0035556,GO:0042391,GO:0042592,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043269,GO:0044057,GO:0044087,GO:0044291,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048518,GO:0048562,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051020,GO:0051028,GO:0051049,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051270,GO:0051493,GO:0051641,GO:0051649,GO:0051716,GO:0055117,GO:0060047,GO:0060341,GO:0060429,GO:0060562,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072359,GO:0072594,GO:0086004,GO:0090226,GO:0090257,GO:0098589,GO:0098590,GO:0098772,GO:0098805,GO:0098857,GO:0098900,GO:0098901,GO:0098902,GO:0098905,GO:0098909,GO:1900825,GO:1902305,GO:1902903,GO:1903076,GO:1903078,GO:1903115,GO:1903522,GO:1903779,GO:1903827,GO:1903829,GO:1904062,GO:1904375,GO:1904377,GO:1905475,GO:1905477,GO:2000008,GO:2000010,GO:2000649
Exons6
Evalue1.63e-89
EggNOG OGsKOG3329@1|root,KOG3329@2759|Eukaryota
Ec32 ortholog descriptionMog1/PsbP, alpha/beta/alpha sandwich
Ec32 orthologEc-06_010710.1
Descriptionregulation of microtubule nucleation by Ran protein signal transduction
Cds size873
COG categoryS
BRITEko00000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig189.36.1prot_P-littoralis_Contig189.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig189 184416..187676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789902.2274632-CDS-P-littoralis_Contig189:184415..1845751680789902.2274632-CDS-P-littoralis_Contig189:184415..184575Pylaiella littoralis U1_48CDSP-littoralis_Contig189 184416..184575 -
1680789902.2398064-CDS-P-littoralis_Contig189:184716..1850101680789902.2398064-CDS-P-littoralis_Contig189:184716..185010Pylaiella littoralis U1_48CDSP-littoralis_Contig189 184717..185010 -
1680789902.2529874-CDS-P-littoralis_Contig189:185396..1855131680789902.2529874-CDS-P-littoralis_Contig189:185396..185513Pylaiella littoralis U1_48CDSP-littoralis_Contig189 185397..185513 -
1680789902.26335-CDS-P-littoralis_Contig189:186511..1867271680789902.26335-CDS-P-littoralis_Contig189:186511..186727Pylaiella littoralis U1_48CDSP-littoralis_Contig189 186512..186727 -
1680789902.271913-CDS-P-littoralis_Contig189:187590..1876761680789902.271913-CDS-P-littoralis_Contig189:187590..187676Pylaiella littoralis U1_48CDSP-littoralis_Contig189 187591..187676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789902.2803926-UTR-P-littoralis_Contig189:187676..1877131680789902.2803926-UTR-P-littoralis_Contig189:187676..187713Pylaiella littoralis U1_48UTRP-littoralis_Contig189 187677..187713 -
1680789902.2890823-UTR-P-littoralis_Contig189:188528..1886341680789902.2890823-UTR-P-littoralis_Contig189:188528..188634Pylaiella littoralis U1_48UTRP-littoralis_Contig189 188529..188634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig189.36.1

>prot_P-littoralis_Contig189.36.1 ID=prot_P-littoralis_Contig189.36.1|Name=mRNA_P-littoralis_Contig189.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=291bp
MSGPPDATLRKLFGGAMECFLPAAYADVSDLRQVPDHQEAFVSREDGISI
IIEVLSFEAEISSELDGHGDGASARHFFEDLTAANGASSSACDYCADLSD
SIMPKLGSYSKAVLAGRQTVVKFRGDGPPESVRVYLVNVRLPNVGTDLLI
TANVPYPDEVAAARSMASAECFFPSSAPPPPQQQEQHTTDAGGGVPGVAS
PEIASASSSSAAAAPLAGGQTPPAVSAAAGDAVASDTSARGVGQGGGSGR
PLSSSDEGDGGHGDPGCDVGIAALRSLLHSFSILDWSLFG*
back to top

mRNA from alignment at P-littoralis_Contig189:184416..188634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig189.36.1 ID=mRNA_P-littoralis_Contig189.36.1|Name=mRNA_P-littoralis_Contig189.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4219bp|location=Sequence derived from alignment at P-littoralis_Contig189:184416..188634- (Pylaiella littoralis U1_48)
TGAGGACTAGATAACTGCTGGCGCCGCCTCTTTGCGTTGAAGGTTCGCGG
GGGTTGAGGGTTTCCGACATCTGGCTGGCAAGCAAATTACTCTCCGGGAG
CACATGGTGTGGGATAGATGTGTGATCTCCTACATATGATATGTGTGTGT
GTGTGTGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTGCAAACT
ACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGA
GGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCG
CGAGCAGGGGTCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGATT
TTACTAACAGCATAGCCGCTTTCAAAGTAGCAAAGGAACACATTCACCGG
GAATCGAACCCCCGTTCCTCTGCATCTAGTGGTTAACGATATGATGAGAT
ACAAAGAAATATAAAGCTCGTGTGTGACCTTCCTGTGTGATCCCGGCTGG
TGCACCCACTTCATACCGAAAGGTGTAGACCGGTGCCCAAAATAAATGGG
ACGAACACACACACGCATGATGCACTTCGTACTCTGTTCTGTATCATATC
ATAAATCGCCTTTGCCGTGGTGTGATGGGTACGTGCTCCTGTCTCTCTGT
TTGACATGCACAATGAACAACCAACAAATTTTCAATTTTTGACACATTCC
GAACGAACGTGGGTTGGGGGGGGGGGGAACCTTGGAGGTAGATGACGGGA
TAGATACATCAGTAAACACGTCCGGTAGTGACCAACCCCTCGCTTTTGCA
TGACGAAGTTGGTAGCACCGGGCGCCGTCCGTCTGCAGAAAGCAGAGAGT
GCGTCGATCACCATCAACAAACTCCTCTCCCCTAACCCGTTCAGAAATCT
CTTGACCTGACAACTCAACAGATCGGCCGTCCGACACGTGTGAGAGGCGA
TTGAAATCATGAGCGGTCCTCCCGACGCTACTCTCCGGAAGCTTTTCGGT
GGCGCGATGGAGTGCTTCCTCCCGGCGGCGTACGCGGACGTCAGGTGGGT
GGGGCGGGTGGGTTGCCAAACATAGCGCGAAACAGGGAGCACTGCTGTAC
GGCGGAGCACACCAGGCGGGCCGTTCGATACCCAGACAGCATTGAATTCA
TCGCGTGGGAGACACTTATCATACATGGTGCTCCAAAACGATGTTCTGTC
GCTGTACAAAGGCAATGGATGCGTGTTTCCGGTCTTCCCCAAGCCCGTGG
GTTTTTCGTGGAGATGGGAAGTAAGGTGCTGTGTGGTATTCCGACGGGCT
GCTTTAGACCCTGGTCCTGTCGCTGCCACGTGTCGCCGTTGCAGCTGCAT
GATAAATACTCCGGAGTATAATATTTCTCGCCGCAGAGCCGGCCGAAGAG
AGCCTGTAGAATCACGTGAACCGCGTCGTTACGAATGATAGCTGGCTGTT
GTTCTCTTCCGGGAGAATCTCCCACATTTCCCCCGTTAGAGTCTGGCTGT
CAATCCCCCCTCCCCCTCCCCTTCTCCTCCCCCAACCCCCCCCTCGATGG
TGGCCGTAAGAGGCCAAACACGGGGAGACTGCCGTAGGGGTATGCAACAA
TTTTCTGCGCAGTCAATATACGGCAAGAGTGTGAACAACACCATAAATAT
TTTGCGGTGACTCCCACTAGAAGCAGGATACAGCAGTACGATATGCAACT
TAATTATCATGCAATAAATGTAAGAAAAAAGGGTAAACAACGCCCAAATG
TTGGCGGTGATTCCATCGGAACGCAGGAAGTATGCTCGTCGACTCGAATC
GATGCGTGGTCAATGGTCAGATGACTACGGCAAGCAACACATAAGTATAC
GCTTCACCCCCCCTACCCCCCTACCCCCCCCCCCCCTTCCCTTCCCTCGC
TGCCCAGTGACCTTCGACAGGTACCCGACCATCAGGAGGCATTCGTCAGT
CGGGAGGACGGCATCAGTATCATCATCGAGGTGCTGTCCTTCGAGGCCGA
GATTTCTTCGGAGTTGGACGGGCATGGAGACGGGGCAAGCGCCCGCCACT
TCTTCGAGGATCTCACGGCCGCGAACGGAGCGTCGAGCTCTGCTTGTGAC
TACTGCGCTGATCTGTCTGACAGGTGAGTGCACTATATGCACCTTTTTTC
TGTGCCGATCTGTACTGACTGTGAGCGTGCTGTTACGTTTTTTGCGCCGA
TCTGTGCCGTAGCCTTAGGCGAGCGTACTCACTCTCTTTTTTTGCACCGA
CTTTGTTCGAGGGGTGAGCCTTGTTCTATCTGTATCTTTGTTTTTGCTTT
TCTGCCGACGGACACGACACGCGTCCTTCGGTACCTTCTTTGTGCCGATC
TTTCCCACGGGGGAGCGTGCTGTACCTTTTTTGCGCCGATCTGTCCGACT
GGTGAGCGTGCCATCTGTATATTTTTTCGACGATGGTATCCTACCAATAA
GCGTACTGCTGAGCCTTTTTCGTGGCTGACGAGTGAACGCACTGCTGCTG
CACTTCCAGCACGACTTCTGCGCGAAAGCGCTGATTGATTTTCGGTTGCT
CTTTCGTCACTGGTGACCAACGGGGAAAGCCGTCCGTTGGGATTCGTTTG
CCCTAGACGAGTACAAGTTTCTACAGCTGAGCCAGCTGTGCATGTGCCGC
TCGCTGCTGCTGCGTAGCGCCGCGGCGTCGGTCGACCATCCTCAAGACTG
CTCCGCTGTAGATTCATTGTGCGATATCTCCCTCTCTCTGTGATTTGCTG
TTTAGTTTCTGCAGCGTGCCGTTGCTTGCGGAAGACGCCGCATCAGCACT
CCTATCATCCAGTCCAGCCGAAGGCCTCGTTTGCCGCCTCCGGTTCTCTA
CCAGAGCCCCAAACAGATCCGTGTGTCGTGAAACAAACTTCTGGAAATTT
CTTCCCCCGCCCATTTCGAAAGCGACTCGAAGGGTCAGAGACCACCGATC
GCCTTGGGCCTCCTGCAGTCAAACGGCGCCCTGATACACCCACCCACCCA
CCCACCCACCGCGCTTGTTCCCTTGGTCTCTTGCTGTGCCGCTCGCTCTC
TCAACATGGCGCCGACACAAAACACGAAATATATCCGCGCGCCGCTCTGT
CCGCTCCCGGGTTCCCATCAGCATAATGCCAAAGCTGGGATCGTACTCCA
AAGCAGTCCTGGCAGGACGGCAGACGGTGGTCAAGTTTCGAGGGGACGGT
CCCCCCGAATCTGTCCGCGTGTACCTTGTGAACGTTCGGTGAGAGAGGAT
TGTTTGTTGTGTTTTGTGTTTGAAGGTAATGAAGCAAAAGCGGCACTCCC
GCCTTGTGCAAAAAGAGCAAACCCAAGTCAAACTTGAAAGTACATTTGTA
TACCGGAATATGTCGGAATGATTCACGTTCATGGCTCAATCCATCGTTGG
GCGTGTGCGCCGTGTTGACATGCTCGGCTGACAGCAGTCATCTCGACTGC
CGCCAGCCGCCCTGAGTGGTGATCCACGATTGGTTGGAACCTCACCGGCG
AGCTTGAATGCGGTTGTTTGTCTTGCCACAAGCAAACAACACCCCTCTCC
CCCGAGATGACTGACCATGCGCGCGCACACGTGTACACGCACAATGTATC
CGCACTTGTCAACCAACCCCTCAGGCTACCGAACGTCGGCACCGACCTCC
TCATCACGGCCAACGTACCGTACCCCGACGAAGTGGCAGCAGCAAGGTCG
ATGGCGAGCGCCGAATGTTTTTTTCCTTCGAGTGCGCCACCGCCGCCGCA
GCAGCAGGAGCAGCACACAACAGATGCAGGCGGCGGGGTCCCAGGAGTGG
CTTCACCAGAAATAGCATCAGCATCATCATCATCAGCAGCAGCAGCGCCC
TTGGCGGGCGGGCAAACGCCCCCTGCTGTTTCTGCTGCTGCCGGCGATGC
GGTGGCATCTGATACATCGTCATCACTCAAAGATGCAACTCGGGAACAAC
CAGTGGCGGCGCCACCGACAAGGAGAGAAAATGCGTTGTTACCAGCGGGG
GGGGATGGGGGTGTCGTGGTTTCGAATGCCCCAGAAGAAAACTGTGCGGG
GGGGGGAAGGGCGAGGGGGGTCGGGCAAGGTGGAGGTAGCGGGCGGCCGC
TTTCTTCGTCTGATGAAGGTGACGGTGGCCATGGCGATCCCGGTTGCGAT
GTCGGCATTGCGGCCCTTCGATCCCTCTTGCACTCCTTTTCTATTTTGGA
CTGGTCTTTGTTCGGCTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig189:184416..188634-

>mRNA_P-littoralis_Contig189.36.1 ID=mRNA_P-littoralis_Contig189.36.1|Name=mRNA_P-littoralis_Contig189.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=873bp|location=Sequence derived from alignment at P-littoralis_Contig189:184416..188634- (Pylaiella littoralis U1_48)
ATGAGCGGTCCTCCCGACGCTACTCTCCGGAAGCTTTTCGGTGGCGCGAT
GGAGTGCTTCCTCCCGGCGGCGTACGCGGACGTCAGTGACCTTCGACAGG
TACCCGACCATCAGGAGGCATTCGTCAGTCGGGAGGACGGCATCAGTATC
ATCATCGAGGTGCTGTCCTTCGAGGCCGAGATTTCTTCGGAGTTGGACGG
GCATGGAGACGGGGCAAGCGCCCGCCACTTCTTCGAGGATCTCACGGCCG
CGAACGGAGCGTCGAGCTCTGCTTGTGACTACTGCGCTGATCTGTCTGAC
AGCATAATGCCAAAGCTGGGATCGTACTCCAAAGCAGTCCTGGCAGGACG
GCAGACGGTGGTCAAGTTTCGAGGGGACGGTCCCCCCGAATCTGTCCGCG
TGTACCTTGTGAACGTTCGGCTACCGAACGTCGGCACCGACCTCCTCATC
ACGGCCAACGTACCGTACCCCGACGAAGTGGCAGCAGCAAGGTCGATGGC
GAGCGCCGAATGTTTTTTTCCTTCGAGTGCGCCACCGCCGCCGCAGCAGC
AGGAGCAGCACACAACAGATGCAGGCGGCGGGGTCCCAGGAGTGGCTTCA
CCAGAAATAGCATCAGCATCATCATCATCAGCAGCAGCAGCGCCCTTGGC
GGGCGGGCAAACGCCCCCTGCTGTTTCTGCTGCTGCCGGCGATGCGGTGG
CATCTGATACATCGGCGAGGGGGGTCGGGCAAGGTGGAGGTAGCGGGCGG
CCGCTTTCTTCGTCTGATGAAGGTGACGGTGGCCATGGCGATCCCGGTTG
CGATGTCGGCATTGCGGCCCTTCGATCCCTCTTGCACTCCTTTTCTATTT
TGGACTGGTCTTTGTTCGGCTGA
back to top