prot_P-littoralis_Contig189.32.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig189.32.1
Unique Name	prot_P-littoralis_Contig189.32.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	253

Homology

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 8.100e-109
Identity = 206/253 (81.42%), Postives = 210/253 (83.00%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGRDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXX-TGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGRSRSPVRRRSRSPPPRRGSXXXXXXXXXXXXXXXPYGGGGRSRSRSPIRGDRY 252
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFAD+RDA DAVREIDG+SIAGREWRVE+SHQRGRDRG    XX   XXXXXXXXXXXXXXX            TG+KVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDD  SG      P     RSPPPRRGSXXXXXXXXXXXXXXX         SRSPIR DRY
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXXXXXXXXXXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPAXXXXRSPPPRRGSXXXXXXXXXXXXXXXXXX---XXXSRSPIR-DRY 249

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.290e-69
Identity = 143/202 (70.79%), Postives = 147/202 (72.77%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEI------------------------------------------SHQRGRDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 160
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFAD+RDA+DAVRE+DGRSIAGREWRVEI                                          SHQRGRDRG      G G    XXXXXXXXXXXXXXXXXXXXXX  +KVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRG----PPGGGYGGGXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 188 bits (477), Expect = 7.150e-56
Identity = 115/227 (50.66%), Postives = 141/227 (62.11%), Query Frame = 0

Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISH-QRGR-------DRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGRSRSPVRRRSRSPPPRRG 217
            MGD    GTKV++GN+     E +LRDEF+++G L +VW+ARNPPGFAFVWF+D RDA DAVR +DG  + G+  RVEISH +RGR        RGG     G+G       XXXXX              TGFKVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F DRRI ++ +D +          RR SRSPPPRRG
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQVWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGG-----GYGDRDRGYDXXXXXSSRPPPRAGGAPRKTGFKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDR-------YRRDSRSPPPRRG 214

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.530e-40
Identity = 94/209 (44.98%), Postives = 121/209 (57.89%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGR-DRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGRSRSPVRRRSRSP 212
            GT+V+VG L      R+++D FS++G ++ +WVARNPPGFAFV F D RDA DA+R +DGR   G   RVEI+    R D GG      FGXXXXXXXX                  T F+VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  +    G   S     RRSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVSNIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIARGGSRRDDGGRGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQR--TDFRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSS----RRSRSP 204

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A484E7I0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7I0_BRELC)

HSP 1 Score: 145 bits (365), Expect = 3.500e-38
Identity = 82/205 (40.00%), Postives = 112/205 (54.63%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGRDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGRSRSPVRRRS 209
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++      RGG     G                            T F+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  AV++LDDT F    +RV  +  +S R  SRSP R RS
Sbjct:   90 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGREFLGGRIRVELA------RGGSRRDGGGRRGDDERFGRGGSGGDRVERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAVKKLDDTEFRGSYVRVAPEGDSSRR--SRSPARGRS 286

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 140 bits (354), Expect = 7.460e-38
Identity = 76/202 (37.62%), Postives = 114/202 (56.44%), Query Frame = 0

Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGRDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGRSRSPVRRRS 209
            +V+VG +  +   R++ + F +FG++  VW+ARNPPGFAFV F D RDA DA++++DG+ + G   RV+++   G  RGG                                  +G KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +      + R RS+SP RR S
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKIVNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMARG-GVRRGGRGDRD----------------RSYRDGSSDRHRSSGHKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSIK-----AVRDRSQSPRRRAS 184

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 140 bits (352), Expect = 3.050e-37
Identity = 85/220 (38.64%), Postives = 114/220 (51.82%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGR------------DRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGRSRSPVRRRSRSP 212
            GT+V++G L      R+++D FS++G +  +W+ARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R             RGG     G                            T F+VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+    AAS   RSRS   RR RSP
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHIANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDRXXXXXXXXXXRGGDRFERG---------------------GRNPPQRTEFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRIT---AASSEERSRSRSPRRDRSP 197

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 135 bits (341), Expect = 2.550e-36
Identity = 73/178 (41.01%), Postives = 102/178 (57.30%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGRDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYF 182
            GT+V+VG L      R+++D F+++G ++ +WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++      RGG     G  XXXX                      T ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVSNIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA------RGGSRRDGGGRXXXXDRGGYGGRGGDRFDRGRNPPQRTDYRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A2D4BLB0_PYTIN (Serine/arginine-rich splicing factor 1-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLB0_PYTIN)

HSP 1 Score: 134 bits (338), Expect = 3.430e-35
Identity = 80/188 (42.55%), Postives = 110/188 (58.51%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRG---RDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTGFKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMSRAVRELDDTYFADRRIRV 189
            GT+V+VG L     +R+++D F ++G ++ VW+ARNPPGFAFV F D RDA DA+R +DGR   G   R+ +   RG   RDRG                 XXXXXXX           T F+VRIT LP G+ W ++KD +R AG+VT+ +V GD   +AEF  ++DM  A+++LDD  F    IR+
Sbjct:    2 GTRVYVGGLPRDATQREIQDGFGRYGHISNVWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLG--GRIRVEQARGGTRRDRG------------DRGDFXXXXXXXRNERGRNPPQRTDFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVEGDGTAIAEFQTQEDMDNAIQKLDDKDFRGSYIRI 175

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BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Match: A0A7S3PMS3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.720e-34
Identity = 105/185 (56.76%), Postives = 130/185 (70.27%), Query Frame = 0

Query:    7 TKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWFADERDASDAVREIDGRSIAGREWRVEISHQRGRDRGGXXXXXGFGXXXXXXXXXXXXXXXXXXXXXXXXXXTG---------FKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYF 182
            +K++VGN+     E +L D+F K+G+++ VW+ARNPPGFAFV F D RDA DA+++++ R   GR  RVE+S +R   R  XXXXX   XXXXXXXXXXXXXXXXXXXXXXXXX  G         F+V ITGLP    W +LKDF+R+ G+V YADVR  EGVA+F   DDM RAVR+LD T F
Sbjct:    2 SKLYVGNIPDDTREGELEDKFKKYGKISSVWLARNPPGFAFVTFDDPRDAEDAMKDMNDREFLGRRIRVELSKER---RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRHRDYRQGEFRVIITGLPSRCSWQDLKDFLRRGGEVCYADVRDGEGVADFLTADDMDRAVRKLDGTDF 183

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig189.32.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5E4_ECTSI	8.100e-109	81.42	Similar to arginine/serine-rich splicing factor 7 ...	[more]
A0A6H5L109_9PHAE	1.290e-69	70.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z7K1_9STRA	7.150e-56	50.66	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YQ52_9STRA	2.530e-40	44.98	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A484E7I0_BRELC	3.500e-38	40.00	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A6G0XSF8_9STRA	7.460e-38	37.62	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A8K1CTI4_PYTOL	3.050e-37	38.64	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
G4YPP5_PHYSP	2.550e-36	41.01	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A2D4BLB0_PYTIN	3.430e-35	42.55	Serine/arginine-rich splicing factor 1-like protei...	[more]
A0A7S3PMS3_9STRA	2.720e-34	56.76	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 125..190 e-value: 5.0E-11 score: 52.6 coord: 8..76 e-value: 2.5E-20 score: 83.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 126..188 e-value: 5.9E-9 score: 35.6 coord: 9..74 e-value: 1.0E-16 score: 60.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..80 score: 17.011795
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 124..194 score: 11.212958
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..116 e-value: 6.5E-28 score: 99.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 125..193 e-value: 2.5E-16 score: 61.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..252
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 6..246
None	No IPR available	PANTHER	PTHR23003:SF36	SERINE AND ARGININE-RICH-SPLICING FACTOR 5A-RELATED	coord: 6..246
None	No IPR available	CDD	cd12373	RRM_SRSF3_like	coord: 8..79 e-value: 6.67542E-32 score: 110.403
None	No IPR available	CDD	cd12339	RRM2_SRSF1_4_like	coord: 124..191 e-value: 1.66924E-27 score: 98.8459
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..192

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig189	contig	P-littoralis_Contig189:169784..176517 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig189.32.1	mRNA_P-littoralis_Contig189.32.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig189 166108..176829 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig189.32.1 ID=prot_P-littoralis_Contig189.32.1|Name=mRNA_P-littoralis_Contig189.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKVWVARNPPGFAFVWF
ADERDASDAVREIDGRSIAGREWRVEISHQRGRDRGGGGGGGGFGGGGGG
YGGGGGGGGYGAPRAGGAAPRTGFKVRITGLPEGMRWSELKDFVRKAGDV
TYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDAASGRGR
SRSPVRRRSRSPPPRRGSPPRGRSRSPPGRGRSPYGGGGRSRSRSPIRGD
RY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf