mRNA_P-littoralis_Contig189.22.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A6H5KZK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK4_9PHAE) HSP 1 Score: 188 bits (477), Expect = 1.260e-53 Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 1
Query: 13 MWHQVAALAGSSAVGLGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATLALLKR 351
M HQ+AALAGSSAVGLGAYGAHGL+GKSDK++ DWKTATQY + HALA+ATLP YQKTPAR AAGLFF+TGITLFSGSIYY+ L ++KKASKVAPAGGIC+ILGWAT+A+LKR
Sbjct: 1 MLHQIAALAGSSAVGLGAYGAHGLAGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLFFTTGITLFSGSIYYACLKEDKKASKVAPAGGICMILGWATMAILKR 113
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A835YJ16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ16_9STRA) HSP 1 Score: 135 bits (340), Expect = 4.290e-34 Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = 1
Query: 13 MWHQVAALAGSSAVGLGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATLALLKR 351
+WH VAAL+G+S VGLGA GAH L K++K + DW TAT+Y L H+LA+A LPAYQ++ AR AAG+ F++GI LFSGSIY LTDN K S AP GG+ I GW +LALLKR
Sbjct: 2 VWHVVAALSGASGVGLGAIGAHRLKNKTEKEKNDWNTATRYQLIHSLALAVLPAYQRSNARTAAGVLFTSGIILFSGSIYTYILTDNIKMSGAAPLGGMAFIAGWLSLALLKR 114
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: D8LH09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH09_ECTSI) HSP 1 Score: 114 bits (285), Expect = 2.500e-26 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
Query: 58 LGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAAAGLFFSTGITLFSGSIYYS 258
LGAYGAHGLSGKSDK++ DWKTATQY + HALA+ATLP YQKTPAR AAGL F+TGITLFSGSIYY+
Sbjct: 17 LGAYGAHGLSGKSDKIKADWKTATQYQMFHALALATLPIYQKTPARTAAGLLFTTGITLFSGSIYYA 83
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A7S4IW56_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IW56_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 3.280e-20 Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 25 VAALAGSSAVGLGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIATLPAY---QKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATLALLKR 351
V L+G+++VG GAYGAHGL GK ++T +YHL H+ + P+ +T A AAG F +TGI LF GS Y +T+++ K APAGG+ LILGW +LALL++
Sbjct: 7 VGGLSGAASVGAGAYGAHGLRGKDQSYVRSYETGARYHLVHSALLVATPSICGGGRTRAATAAGAFLTTGIGLFCGSCYAVGVTEDRAYGKAAPAGGVSLILGWVSLALLRK 118
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: D3BR49_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BR49_POLPP) HSP 1 Score: 95.1 bits (235), Expect = 1.430e-19 Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query: 10 NMWHQVAALAGSSAVGLGAYGAHGLSGK-SDKVRTD-WKTATQYHLCHALAIATLPAYQKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATLALL 345
++W ++ L+ +SAVGLGA+G+HGL K SD V+ D WKTA+ YHL H++AI P + K P A G+ F++G+ LFSGS+YY ++ KK V P GG+ LI GW L LL
Sbjct: 10 SIWWKIGGLSAASAVGLGAFGSHGLKKKVSDPVKLDYWKTASHYHLLHSIAIMMAP-FSKNPNFA--GVMFTSGVVLFSGSLYYMTV-GQKKMGFVPPIGGVGLIAGWLALVLL 119
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A6P1UCC6_9GAMM (DUF423 domain-containing protein n=2 Tax=Sinimarinibacterium sp. NLF-5-8 TaxID=2698684 RepID=A0A6P1UCC6_9GAMM) HSP 1 Score: 84.3 bits (207), Expect = 8.810e-16 Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 13 MWHQVAALAGSSAVGLGAYGAHGLSGK-SDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAA----AGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATL 336
+W V AL G V LGA+GAHGL + S ++ WKTA +Y L HAL + + + + A A AG+ F+ G+ +FSGS+Y SL+ + + P GG+CL+LGWA L
Sbjct: 8 LWLLVGALYGFVGVALGAFGAHGLRARLSPEMLAIWKTAVEYQLYHALVLLVVGVWLRAAASATPLNVAGIGFTAGVLIFSGSLYALSLSGVRMLGAITPIGGLCLLLGWAAL 120
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A3R8MTW4_9BURK (DUF423 domain-containing protein n=1 Tax=Lautropia dentalis TaxID=2490857 RepID=A0A3R8MTW4_9BURK) HSP 1 Score: 83.2 bits (204), Expect = 3.250e-15 Identity = 51/113 (45.13%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 16 WHQVAALAGSSAVGLGAYGAHGLSGK-SDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAA---AGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATLAL 342
W AL G+ AVG GAYG+H L + ++ + ++TA +Y + HALA+ + A +R A AG FF GI LFSGS+Y SLT + + PAGGIC ILGW TLA+
Sbjct: 20 WLGAGALFGAIAVGAGAYGSHALRAELAEPLLVMYETAVRYQMYHALALLAVGALGHVLSRRALTLAGSFFIAGILLFSGSLYALSLTGERPFPFMTPAGGICFILGWLTLAV 132
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: UPI00077F1229 (transmembrane protein 256 homolog n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI00077F1229) HSP 1 Score: 82.8 bits (203), Expect = 4.800e-15 Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 16 WHQVAALAGSSAVGLGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATL 336
W ++A L G++AVGLGAYGAHGL + + + + TA YH H L +A +P K P G G TLFSG+IYY+ T ++ P GG+ LI+ W T+
Sbjct: 40 WTRIAGLLGAAAVGLGAYGAHGLQNITPEQKRQYDTANYYHFLHTLGLAVVP-LSKRPILT--GTLMLLGTTLFSGTIYYNIFTGKDNLKRLTPYGGMILIISWLTM 143
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A0T6UVD2_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. TTU2014-080ASC TaxID=1729724 RepID=A0A0T6UVD2_9PSED) HSP 1 Score: 82.0 bits (201), Expect = 5.090e-15 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 13 MWHQVAALAGSSAVGLGAYGAHGLSGK-SDKVRTDWKTATQYHLCHALA---IATLPAYQKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATLAL 342
+W +AA+AG S VGLGAYGAHGL + + ++TATQY L HALA ++ L + +AAG F+ GI LF GS+Y +LT + VAP GG+ +LGW L L
Sbjct: 4 LWLLLAAVAGCSGVGLGAYGAHGLKRVLTPEYLAIFQTATQYQLIHALALFGVSLLATQRGGRLVSAAGGLFTVGIVLFCGSLYVLTLTGTRSMGMVAPIGGLSFMLGWLMLGL 117
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Match: A0A132AI27_SARSC (DUF423 domain containing protein n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A132AI27_SARSC) HSP 1 Score: 81.3 bits (199), Expect = 8.730e-15 Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 16 WHQVAALAGSSAVGLGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIATLPAYQKTPARAAAGLFFSTGITLFSGSIYYSSLTDNKKASKVAPAGGICLILGWATL 336
W +VAALAG +AV +GAYGAHGL S++ R ++TA +YH HALA+ +P ++ G FS+GI +F G+ Y +++T N+ + P GG I+GW +
Sbjct: 15 WIKVAALAGCTAVLMGAYGAHGLKNISNERRQVFETANKYHFYHALAMLAVPFLKRYHL---VGALFSSGIMVFCGTCYCNAITGNESVIRYTPIGGWMFIIGWLAM 118 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig189.22.1 >prot_P-littoralis_Contig189.22.1 ID=prot_P-littoralis_Contig189.22.1|Name=mRNA_P-littoralis_Contig189.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp MWHQVAALAGSSAVGLGAYGAHGLSGKSDKVRTDWKTATQYHLCHALAIAback to top mRNA from alignment at P-littoralis_Contig189:134944..142086- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig189.22.1 ID=mRNA_P-littoralis_Contig189.22.1|Name=mRNA_P-littoralis_Contig189.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7143bp|location=Sequence derived from alignment at P-littoralis_Contig189:134944..142086- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig189:134944..142086- >mRNA_P-littoralis_Contig189.22.1 ID=mRNA_P-littoralis_Contig189.22.1|Name=mRNA_P-littoralis_Contig189.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig189:134944..142086- (Pylaiella littoralis U1_48)back to top |