mRNA_P-littoralis_Contig189.4.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig189.4.3 vs. uniprot
Match: D8LH17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH17_ECTSI) HSP 1 Score: 347 bits (890), Expect = 4.490e-100 Identity = 270/514 (52.53%), Postives = 317/514 (61.67%), Query Frame = 3
Query: 1179 ESGRRADAEGLKRLQAELDRKVQELQEQTEKVESLEASKRKADALAARRDRSLQELMEKNRARYERENSELKEA---------------DAKARLGLAQSRSKELEKEAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQDQLREETEAFRRERQRADELQARQDKEAAQNELVKERLFDLERSVEMADWSERKLAKENEGLQGLISRNRKRFQKELARLGQASADLLDKTEALKETESLLSIEQQTVNDLTRQVATLTEKSEALSNELSVTRDRLAKETTMRINAETA-----LRQATDKSYVEQISSADATLEKARIDGQAAVEEVQKLLAMEKQSWDSEKSSLSARLEEALRSTEAFTIRVKELEGVTEKLRKESQQTKEEAEELRRQLKLSAKSADEAKEGQTRLLTELEATKGVTEERNRLQKSVANLKSALKKLTGRSGDNFDNSDNST-------VLEEAQKRLSKTAASLSGGE 2639
E+ R GL RLQ EL KV EL+ QT+K SLEA K +A+ A +R+RSLQ+LMEKNRARYE+ N EL+E DAK +L XXXXXXXXXXX EL+++L QA QDKE AQ ELVKERLFDLERSVEMA+WSERKLAKENEGLQGLISRNR+RF KELARL ASADL DK+ ALK+ E++ E+QTV +L QV TL K+E L+ ELS+TRD LA+ET MR+ AETA L + DK Y EQ+ ADA L+ AR +GQAAV EVQ LL EKQ+W +EKSSL+ RLEEALRSTE F+ RV LE TEKLR+ESQQ+K EAE+LR QL LSAKS EA + RL+TELE TKGV EERNRLQKSV NLK+ALKK TG+ D DN+ + LE+AQ+RLSKTAA+LSG E
Sbjct: 151 ENANRITDGGLARLQTELAVKVSELRLQTDKALSLEAQKERAEVAAVKRERSLQDLMEKNRARYEKANLELQEEVEALSQLKDAAAGFEDAKIKLXXXXXXXXXXXXXXXXXXXXXXXXXXXLAASVDKSVEEALLLVSKEAALKDVEAQLTAVKDRAKVLEKEALRVPELEEELXXXXXXXXXXXXXXXXXQAIQDKEEAQTELVKERLFDLERSVEMAEWSERKLAKENEGLQGLISRNRQRFHKELARLTVASADLEDKSNALKDLEAVYDRERQTVKELGNQVETLKAKAEELAAELSMTRDELARETEMRLKAETAVEELQLAEKADKGYEEQLKKADAALQAARQEGQAAVAEVQTLLEKEKQAWGTEKSSLTTRLEEALRSTEDFSARVVALESSTEKLRQESQQSKAEAEQLRTQLGLSAKSLSEATVDKERLVTELEKTKGVVEERNRLQKSVDNLKAALKKFTGKQDDESDNNGATLEKEAEVDALEQAQERLSKTAATLSGEE 664
BLAST of mRNA_P-littoralis_Contig189.4.3 vs. uniprot
Match: A0A6H5JEP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEP1_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.590e-11 Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 3
Query: 471 RSEGRASPLEMVVRPFIALATGIQKEAEVLEGEINQRVSDVEAEFKADRDKMQVTLQEAKRQLEELQGV 677
+ + + +PL+M+V PFI ATG+QKEAE LEGE+NQRVS V AEF+ADR M+ TL+EA+ QL+ LQGV
Sbjct: 626 QDDDQLTPLDMLVGPFIVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLREAEEQLKRLQGV 694
BLAST of mRNA_P-littoralis_Contig189.4.3 vs. uniprot
Match: D8LH16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH16_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 7.790e-8 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 3
Query: 471 RSEGRASPLEMVVRPFIALATGIQKEAEVLEGEINQRVSDVEAEFKADRDKMQVTLQE 644
+ E + +PL+M+V PF+ ATG+QKEAE LEGE+NQRVS V AEF+ADR M+ TL+E
Sbjct: 591 QDEDKLTPLDMLVGPFMVFATGMQKEAEFLEGELNQRVSQVTAEFQADRKNMEETLRE 648 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig189.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig189.4.3 >prot_P-littoralis_Contig189.4.3 ID=prot_P-littoralis_Contig189.4.3|Name=mRNA_P-littoralis_Contig189.4.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1191bp MRWPLAVSLGGLALEGGHGFTILPARFKQKAPVPVFLPFPSRSLPTEAHAback to top mRNA from alignment at P-littoralis_Contig189:11692..40190- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig189.4.3 ID=mRNA_P-littoralis_Contig189.4.3|Name=mRNA_P-littoralis_Contig189.4.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=28499bp|location=Sequence derived from alignment at P-littoralis_Contig189:11692..40190- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig189:11692..40190- >mRNA_P-littoralis_Contig189.4.3 ID=mRNA_P-littoralis_Contig189.4.3|Name=mRNA_P-littoralis_Contig189.4.3|organism=Pylaiella littoralis U1_48|type=CDS|length=3573bp|location=Sequence derived from alignment at P-littoralis_Contig189:11692..40190- (Pylaiella littoralis U1_48)back to top |