mRNA_P-littoralis_Contig188.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.46.1
Unique NamemRNA_P-littoralis_Contig188.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:241537..242523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size918
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002690.1
Cds size918
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789898.728448-CDS-P-littoralis_Contig188:241536..2422241680789898.728448-CDS-P-littoralis_Contig188:241536..242224Pylaiella littoralis U1_48CDSP-littoralis_Contig188 241537..242224 -
1680789898.7380605-CDS-P-littoralis_Contig188:242293..2425231680789898.7380605-CDS-P-littoralis_Contig188:242293..242523Pylaiella littoralis U1_48CDSP-littoralis_Contig188 242294..242523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.46.1prot_P-littoralis_Contig188.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 241537..242523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.46.1

>prot_P-littoralis_Contig188.46.1 ID=prot_P-littoralis_Contig188.46.1|Name=mRNA_P-littoralis_Contig188.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=306bp
MATSNPLASHTDVISDVLGYCSLNDFLYLASVSKAWGEAWVKTTPECGRR
RKYTSISMAASTPARTKWVLDDASFWANSTTTTSTTTTTSTTTTNNTSHN
NNDRSNIFCATAAAGNLFGLKAAVTKFGGSSSEGLHSWNTTSTIWSRHWR
GRNNTNDTTNSTVSRRRVPQLAAEVGHFEMLKWAVSEQGCPLSPAVWFFA
AKAGDLNVLEWLSVHGCPRDLHSCTAGASSTRGNLAALRWSRERGHGWDR
FVCHSAARLGDLEMLRWAREGGCLWDPHQCADVAAANGHKAIVAWIHQQI
AGAVH*
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mRNA from alignment at P-littoralis_Contig188:241537..242523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.46.1 ID=mRNA_P-littoralis_Contig188.46.1|Name=mRNA_P-littoralis_Contig188.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=987bp|location=Sequence derived from alignment at P-littoralis_Contig188:241537..242523- (Pylaiella littoralis U1_48)
ATGGCGACGTCAAATCCCTTGGCCAGCCATACTGATGTAATATCAGACGT
GTTGGGCTACTGTTCGCTGAACGATTTTCTTTACCTGGCGAGTGTGAGCA
AGGCGTGGGGAGAGGCGTGGGTGAAGACGACGCCGGAATGCGGGCGTCGG
CGCAAATACACGTCAATCTCGATGGCCGCCTCGACTCCGGCGAGGACGAA
ATGGGTCCTGGATGACGCGAGCTTCTGGGCGTTCGCGAAGCAGCAAATGG
GGGTGACGCCCATGATGAATAACAGCAACAGCAACAGCAACAACAACAGC
AACAGCACCACCACCACCAGCACCACCACTACCACCAGCACCACCACTAC
CAACAACACCAGCCACAACAACAACGATCGAAGCAATATTTTCTGCGCGA
CCGCCGCCGCTGGGAACCTTTTCGGGCTCAAAGCAGCGGTGACGAAGTTC
GGAGGAAGCAGTAGCGAGGGCCTTCACTCTTGGAATACCACCAGCACCAT
TTGGAGCCGTCACTGGCGGGGGCGCAACAACACCAACGATACCACCAACA
GTACCGTTTCTCGACGGCGAGTCCCACAACTTGCCGCCGAGGTAGGGCAC
TTCGAAATGCTTAAGTGGGCCGTGTCTGAACAGGGATGTCCGTTGAGCCC
GGCGGTTTGGTTCTTCGCCGCAAAGGCTGGCGATTTAAACGTGCTGGAGT
GGCTGAGCGTGCACGGCTGCCCCAGAGACTTGCACAGCTGCACCGCTGGC
GCTTCATCGACACGCGGAAACCTGGCGGCCCTTCGTTGGTCGAGAGAGCG
AGGTCACGGGTGGGATCGGTTCGTTTGCCACTCCGCGGCCAGGCTGGGCG
ACCTGGAGATGCTTCGTTGGGCGAGGGAAGGAGGATGTCTCTGGGATCCG
CACCAGTGCGCTGATGTTGCCGCGGCGAACGGGCACAAGGCTATCGTGGC
ATGGATACACCAGCAGATTGCCGGCGCGGTCCACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig188:241537..242523-

>mRNA_P-littoralis_Contig188.46.1 ID=mRNA_P-littoralis_Contig188.46.1|Name=mRNA_P-littoralis_Contig188.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=918bp|location=Sequence derived from alignment at P-littoralis_Contig188:241537..242523- (Pylaiella littoralis U1_48)
ATGGCGACGTCAAATCCCTTGGCCAGCCATACTGATGTAATATCAGACGT
GTTGGGCTACTGTTCGCTGAACGATTTTCTTTACCTGGCGAGTGTGAGCA
AGGCGTGGGGAGAGGCGTGGGTGAAGACGACGCCGGAATGCGGGCGTCGG
CGCAAATACACGTCAATCTCGATGGCCGCCTCGACTCCGGCGAGGACGAA
ATGGGTCCTGGATGACGCGAGCTTCTGGGCCAACAGCACCACCACCACCA
GCACCACCACTACCACCAGCACCACCACTACCAACAACACCAGCCACAAC
AACAACGATCGAAGCAATATTTTCTGCGCGACCGCCGCCGCTGGGAACCT
TTTCGGGCTCAAAGCAGCGGTGACGAAGTTCGGAGGAAGCAGTAGCGAGG
GCCTTCACTCTTGGAATACCACCAGCACCATTTGGAGCCGTCACTGGCGG
GGGCGCAACAACACCAACGATACCACCAACAGTACCGTTTCTCGACGGCG
AGTCCCACAACTTGCCGCCGAGGTAGGGCACTTCGAAATGCTTAAGTGGG
CCGTGTCTGAACAGGGATGTCCGTTGAGCCCGGCGGTTTGGTTCTTCGCC
GCAAAGGCTGGCGATTTAAACGTGCTGGAGTGGCTGAGCGTGCACGGCTG
CCCCAGAGACTTGCACAGCTGCACCGCTGGCGCTTCATCGACACGCGGAA
ACCTGGCGGCCCTTCGTTGGTCGAGAGAGCGAGGTCACGGGTGGGATCGG
TTCGTTTGCCACTCCGCGGCCAGGCTGGGCGACCTGGAGATGCTTCGTTG
GGCGAGGGAAGGAGGATGTCTCTGGGATCCGCACCAGTGCGCTGATGTTG
CCGCGGCGAACGGGCACAAGGCTATCGTGGCATGGATACACCAGCAGATT
GCCGGCGCGGTCCACTAA
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