prot_P-littoralis_Contig188.14.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig188.14.1
Unique Nameprot_P-littoralis_Contig188.14.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length136
Homology
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BLAST of mRNA_P-littoralis_Contig188.14.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.310e-33
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 0 
Query:    5 GPRAGTAAWARWASKVALEGLQEGREASRSLMVAIEMCQRASPNSAGAPT---SLLRPGGARHHRSAAAAGASGVEGRDRS-SAVTDGFDDDXXDLDLSASLWFQTLDKILSAKGAACRT 120
            GPRAGTAAWARWASKVALEGLQEGREA+RSLMVAIEMCQRASP+S+G      S  R  GARH  +A               S + D FDDD  +LDLSASLWFQTLDKILSAKGAACR+
Sbjct: 2064 GPRAGTAAWARWASKVALEGLQEGREATRSLMVAIEMCQRASPSSSGGSVGSMSARRASGARHRSTAGXXXXXXXXXXXXXRSPLADDFDDDG-ELDLSASLWFQTLDKILSAKGAACRS 2182
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.14.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE7.310e-3367.50Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:75535..77220 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.14.1mRNA_P-littoralis_Contig188.14.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig188 75535..77220 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig188.14.1 ID=prot_P-littoralis_Contig188.14.1|Name=mRNA_P-littoralis_Contig188.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
AGGAGPRAGTAAWARWASKVALEGLQEGREASRSLMVAIEMCQRASPNSA
GAPTSLLRPGGARHHRSAAAAGASGVEGRDRSSAVTDGFDDDDDDLDLSA
SLWFQTLDKILSAKGAACRTSDPPPPPPPPAAAATT
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