mRNA_P-littoralis_Contig188.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.14.1
Unique NamemRNA_P-littoralis_Contig188.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig188.14.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 7.310e-33
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:   13 GPRAGTAAWARWASKVALEGLQEGREASRSLMVAIEMCQRASPNSAGAPT---SLLRPGGARHHRSAAAAGASGVEGRDRS-SAVTDGFDDDXXDLDLSASLWFQTLDKILSAKGAACRT 360
            GPRAGTAAWARWASKVALEGLQEGREA+RSLMVAIEMCQRASP+S+G      S  R  GARH  +A               S + D FDDD  +LDLSASLWFQTLDKILSAKGAACR+
Sbjct: 2064 GPRAGTAAWARWASKVALEGLQEGREATRSLMVAIEMCQRASPSSSGGSVGSMSARRASGARHRSTAGXXXXXXXXXXXXXRSPLADDFDDDG-ELDLSASLWFQTLDKILSAKGAACRS 2182
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE7.310e-3367.50Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:75535..77220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size410
Hectar predicted targeting categoryother localisation
Exons3
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789897.3361237-CDS-P-littoralis_Contig188:75534..757111680789897.3361237-CDS-P-littoralis_Contig188:75534..75711Pylaiella littoralis U1_48CDSP-littoralis_Contig188 75535..75711 -
1680789897.3508532-CDS-P-littoralis_Contig188:76158..763081680789897.3508532-CDS-P-littoralis_Contig188:76158..76308Pylaiella littoralis U1_48CDSP-littoralis_Contig188 76159..76308 -
1680789897.3623493-CDS-P-littoralis_Contig188:77139..772201680789897.3623493-CDS-P-littoralis_Contig188:77139..77220Pylaiella littoralis U1_48CDSP-littoralis_Contig188 77140..77220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.14.1prot_P-littoralis_Contig188.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 75535..77220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.14.1

>prot_P-littoralis_Contig188.14.1 ID=prot_P-littoralis_Contig188.14.1|Name=mRNA_P-littoralis_Contig188.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
AGGAGPRAGTAAWARWASKVALEGLQEGREASRSLMVAIEMCQRASPNSA
GAPTSLLRPGGARHHRSAAAAGASGVEGRDRSSAVTDGFDDDDDDLDLSA
SLWFQTLDKILSAKGAACRTSDPPPPPPPPAAAATT
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mRNA from alignment at P-littoralis_Contig188:75535..77220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.14.1 ID=mRNA_P-littoralis_Contig188.14.1|Name=mRNA_P-littoralis_Contig188.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1686bp|location=Sequence derived from alignment at P-littoralis_Contig188:75535..77220- (Pylaiella littoralis U1_48)
GCGGGAGGCGCAGGGCCGAGGGCGGGGACGGCGGCGTGGGCAAGATGGGC
CAGCAAAGTCGCGCTCGAAGGTCTACAGGAGGTATGATCTGATGATATGA
CACCGATTTTTGTTTTGTTTTTAATATTGTTGAAGCGGGGCGTATGTACG
TGGTTTACTCGATTTGGTCTCTCTCTCGCCCTACGAGAGGTGAAAAACAA
TTTCCTGGCAGTTTCTTTATTCGTGTGAATTTCTTTCGTTGTGTGTCTTT
TCGGTAGTCTCTTTTGGCTCCTCCTGTGCCTTACTCTCCTTCTCTGTGGA
ATGCTGCTGTGCCGCTGCTAACATTGTCGCGCACAGCACAGGAGACAAAT
CAATCCGCGCATTGAAATTGATCTTCTTGACCCAGGCTTCGTTCCTTCCT
CCCGGAATCGTGTCACAAAACATATTTTCTTGTTTTATTGGAAAATTGAA
AATTGGGCCCCCCTTTCTTCCTATCGTGAAAGGATGCGATCGTAGAATTC
AGCTTGTCTTGCCGAGTGTCCCGTGCTTGCTGCGTCATCTTGTTCCTTTT
TTGTTTAATCCCAAGCACTTTTCCTGCGAAAAAAAGCAGCCTCCCGCTTA
CGGCATACTTAAAAAAAAAAACTATCAGAGCGAATATCATATGCGTCGTC
TTGCTACTCATTATTCCCTAATTTATTGTACACATACATTAACCATCATT
TACACTTTTCATATTTACTCATTTAGCCATCATCTGTCCTTTTCATATTT
TCTGATAAATCGAGCTTGCTGGATTTTTCGTCCTTATCGCCCTAATCGTG
TTGTGTATTCTCTCCTTATCCTTGCGTGCGCGCGCGTGTGTGTGTGTGTG
TGTTTTTTTCGTGGGGGGATGAACGGCTTCGGTCGGACGACCGTACTACC
TTCCGAGCTCAGGGCCGGGAGGCAAGCCGCAGCCTGATGGTGGCGATCGA
GATGTGCCAACGCGCTTCCCCGAACTCCGCCGGAGCGCCGACGTCGCTGC
TGCGGCCGGGCGGAGCCAGGCATCACCGCTCTGCAGCGGCCGCAGGTGCT
TCGGGGGTCGAGGTGAGAGACGGGGGGATGGCAGCCCTCGAAGAACCACG
GATCGCGAAGATACATTCAATTAGATCTTAGTGTTGACTGTTGGTTCTCT
GGCTAGCACGAGCACGCAAGTGCTTCCGTACTTTTTTCCTTTTTTTTTTA
GTTTTACGCCGTCGACCCGCGCATCCATCCCTGTTCTACAATACCGGCAC
TGAGCGGTGGTGCTGCCGCTTCTGTTTTACTGCTACTGCCGCTTCTGCTG
CTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCT
CCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTCTGCTGC
TGCTTCTGCTGCTGCTTCTGCTGCTGCTTCTGCTGCTATCAAATGTTAAT
GTTTCATGTGCTCATCTTGAATGTACTGGTGCTGCTGGTGCTGCTTGATT
TTTTCCCAGGGCCGAGATCGTTCGTCTGCTGTCACCGACGGCTTCGACGA
TGACGACGACGACTTGGACCTGAGCGCGAGCCTGTGGTTCCAGACTCTCG
ACAAGATCCTCAGCGCCAAAGGCGCCGCGTGCCGGACCAGCGATCCTCCT
CCTCCTCCTCCTCCCCCTGCTGCTGCTGCTACTACT
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Coding sequence (CDS) from alignment at P-littoralis_Contig188:75535..77220-

>mRNA_P-littoralis_Contig188.14.1 ID=mRNA_P-littoralis_Contig188.14.1|Name=mRNA_P-littoralis_Contig188.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig188:75535..77220- (Pylaiella littoralis U1_48)
GCGGGAGGCGCAGGGCCGAGGGCGGGGACGGCGGCGTGGGCAAGATGGGC
CAGCAAAGTCGCGCTCGAAGGTCTACAGGAGGGCCGGGAGGCAAGCCGCA
GCCTGATGGTGGCGATCGAGATGTGCCAACGCGCTTCCCCGAACTCCGCC
GGAGCGCCGACGTCGCTGCTGCGGCCGGGCGGAGCCAGGCATCACCGCTC
TGCAGCGGCCGCAGGTGCTTCGGGGGTCGAGGGCCGAGATCGTTCGTCTG
CTGTCACCGACGGCTTCGACGATGACGACGACGACTTGGACCTGAGCGCG
AGCCTGTGGTTCCAGACTCTCGACAAGATCCTCAGCGCCAAAGGCGCCGC
GTGCCGGACCAGCGATCCTCCTCCTCCTCCTCCTCCCCCTGCTGCTGCTG
CTACTACT
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