prot_P-littoralis_Contig188.1.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig188.1.1
Unique Nameprot_P-littoralis_Contig188.1.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length101
Homology
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BLAST of mRNA_P-littoralis_Contig188.1.1 vs. uniprot
Match: A0A6P4YVN4_BRABE (platelet glycoprotein V-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YVN4_BRABE)

HSP 1 Score: 51.6 bits (122), Expect = 2.070e-5
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0 
Query:    2 LHSNRLVTVSEGLFDGLTKLEFLDMAFNDLSS--LPEGAFSDLSSLRTLRIFAN 53
            L +N +  VS   F GL  L+FLD++ N LSS  +PEGAF DL SLRTL +  N
Sbjct:   64 LENNDIAKVSRSDFQGLKSLQFLDLSSNQLSSHGIPEGAFDDLPSLRTLDLSGN 117
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BLAST of mRNA_P-littoralis_Contig188.1.1 vs. uniprot
Match: A0A8C0LU54_CANLU (Slit guidance ligand 2 n=1 Tax=Canis lupus dingo TaxID=286419 RepID=A0A8C0LU54_CANLU)

HSP 1 Score: 50.1 bits (118), Expect = 7.850e-5
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 0 
Query:    2 LHSNRLVTVSEGLFDGLTKLEFLDMAFNDLSSLPEGAFSDLSSLRTLRIFANEL 55
            L  NRL  +    FDGL  L  L +  ND+S +PEGAFSDLS+L  L I AN L
Sbjct:  597 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFSDLSALSHLAIGANPL 650
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P4YVN4_BRABE2.070e-551.85platelet glycoprotein V-like n=1 Tax=Branchiostoma... [more]
A0A8C0LU54_CANLU7.850e-551.85Slit guidance ligand 2 n=1 Tax=Canis lupus dingo T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 68..93
e-value: 8.9
score: 13.7
coord: 42..67
e-value: 15.0
score: 11.9
coord: 18..41
e-value: 3.0E-4
score: 30.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 2..55
e-value: 1.1E-11
score: 44.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 70..91
score: 8.52823
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..100
e-value: 3.1E-22
score: 80.9
NoneNo IPR availablePANTHERPTHR24373SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEINcoord: 2..97
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:6528..8042 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.1.1mRNA_P-littoralis_Contig188.1.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig188 6528..8042 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig188.1.1 ID=prot_P-littoralis_Contig188.1.1|Name=mRNA_P-littoralis_Contig188.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
ELHSNRLVTVSEGLFDGLTKLEFLDMAFNDLSSLPEGAFSDLSSLRTLRI
FANELKPESLPIGLFSGVPQLQNLYLSHNDLKDMTGLEGLFGGLTELVSL
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf