mRNA_P-littoralis_Contig188.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.1.1
Unique NamemRNA_P-littoralis_Contig188.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig188.1.1 vs. uniprot
Match: A0A6P4YVN4_BRABE (platelet glycoprotein V-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YVN4_BRABE)

HSP 1 Score: 51.6 bits (122), Expect = 2.070e-5
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 LHSNRLVTVSEGLFDGLTKLEFLDMAFNDLSS--LPEGAFSDLSSLRTLRIFAN 159
            L +N +  VS   F GL  L+FLD++ N LSS  +PEGAF DL SLRTL +  N
Sbjct:   64 LENNDIAKVSRSDFQGLKSLQFLDLSSNQLSSHGIPEGAFDDLPSLRTLDLSGN 117
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BLAST of mRNA_P-littoralis_Contig188.1.1 vs. uniprot
Match: A0A8C0LU54_CANLU (Slit guidance ligand 2 n=1 Tax=Canis lupus dingo TaxID=286419 RepID=A0A8C0LU54_CANLU)

HSP 1 Score: 50.1 bits (118), Expect = 7.850e-5
Identity = 28/54 (51.85%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    4 LHSNRLVTVSEGLFDGLTKLEFLDMAFNDLSSLPEGAFSDLSSLRTLRIFANEL 165
            L  NRL  +    FDGL  L  L +  ND+S +PEGAFSDLS+L  L I AN L
Sbjct:  597 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFSDLSALSHLAIGANPL 650
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6P4YVN4_BRABE2.070e-551.85platelet glycoprotein V-like n=1 Tax=Branchiostoma... [more]
A0A8C0LU54_CANLU7.850e-551.85Slit guidance ligand 2 n=1 Tax=Canis lupus dingo T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:6528..8042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7091.BGIBMGA011038-TA
Preferred name18w
PFAMsLRR_1,LRR_8,TIR
Model size304
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001667,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002218,GO:0002220,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002697,GO:0002752,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0002831,GO:0003006,GO:0003401,GO:0003674,GO:0004888,GO:0005030,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007154,GO:0007155,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008329,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009653,GO:0009790,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0010506,GO:0010508,GO:0010631,GO:0016020,GO:0016043,GO:0016477,GO:0019222,GO:0019730,GO:0019731,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022610,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030703,GO:0030707,GO:0030855,GO:0031175,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031349,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0038023,GO:0038179,GO:0038187,GO:0040007,GO:0040011,GO:0042221,GO:0042330,GO:0042742,GO:0043207,GO:0043900,GO:0044425,GO:0044459,GO:0044464,GO:0044703,GO:0045088,GO:0045089,GO:0046790,GO:0048468,GO:0048477,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048598,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051607,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0060026,GO:0060089,GO:0060429,GO:0060560,GO:0061564,GO:0065007,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071840,GO:0071944,GO:0080134,GO:0090130,GO:0090132,GO:0097485,GO:0098542,GO:0098552,GO:0120036,GO:0120039
Exons4
Evalue0.000738
EggNOG OGsCOG4886@1|root,KOG4641@2759|Eukaryota,38EYJ@33154|Opisthokonta,3BKAP@33208|Metazoa,3E427@33213|Bilateria,41XSX@6656|Arthropoda,3SGA0@50557|Insecta,442S4@7088|Lepidoptera
Ec32 ortholog descriptionhypothetical leucine rich repeat protein
Ec32 orthologEc-00_009380.1
DescriptionTIR domain
Cds size303
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789896.984115-CDS-P-littoralis_Contig188:6527..65981680789896.984115-CDS-P-littoralis_Contig188:6527..6598Pylaiella littoralis U1_48CDSP-littoralis_Contig188 6528..6598 +
1680789896.9981196-CDS-P-littoralis_Contig188:6976..70481680789896.9981196-CDS-P-littoralis_Contig188:6976..7048Pylaiella littoralis U1_48CDSP-littoralis_Contig188 6977..7048 +
1680789897.0073676-CDS-P-littoralis_Contig188:7493..75711680789897.0073676-CDS-P-littoralis_Contig188:7493..7571Pylaiella littoralis U1_48CDSP-littoralis_Contig188 7494..7571 +
1680789897.0185986-CDS-P-littoralis_Contig188:7960..80421680789897.0185986-CDS-P-littoralis_Contig188:7960..8042Pylaiella littoralis U1_48CDSP-littoralis_Contig188 7961..8042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.1.1prot_P-littoralis_Contig188.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 6528..8042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.1.1

>prot_P-littoralis_Contig188.1.1 ID=prot_P-littoralis_Contig188.1.1|Name=mRNA_P-littoralis_Contig188.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
ELHSNRLVTVSEGLFDGLTKLEFLDMAFNDLSSLPEGAFSDLSSLRTLRI
FANELKPESLPIGLFSGVPQLQNLYLSHNDLKDMTGLEGLFGGLTELVSL
*
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mRNA from alignment at P-littoralis_Contig188:6528..8042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.1.1 ID=mRNA_P-littoralis_Contig188.1.1|Name=mRNA_P-littoralis_Contig188.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1515bp|location=Sequence derived from alignment at P-littoralis_Contig188:6528..8042+ (Pylaiella littoralis U1_48)
GAACTACACTCCAACCGCCTGGTGACCGTGTCCGAAGGGCTCTTCGATGG
ACTCACCAAGCTCGAGTTCTTGTGAGTCCTGCTGGGAAAGCTTTGAAGTC
GGTTGCTCCTCTCACCGGCGATGCACGCTTCGGTACAGGAGTTGTGTAAA
ACGTACGCGGACGCCTGATGTCAGGTCATAATGCTGCGGCGGGATATATG
ATACCTCGCAGCATATTAATTGATACACGTTTCGGCAACCGCCTGGTAAA
TGTTTGCGCCCTTCGATTCATCGTGTCTATTTTTGGTATTGGGCTGGCAC
GTTGATCCCACAATGATCTGACACCACCCGCGGGACGGGACGACCTTGAC
TACATTGTGTCCTTTGCAATTTTCTTGTTGTTCGCACAACCTGCTGTGAC
ACCACTCGTGCTTTTTGTTGTTGCAATGCATGATATCGCACGCGCTCAGG
GACATGGCCTTCAACGACCTGTCCAGCTTGCCCGAGGGGGCGTTCTCCGA
CCTTTCGAGCCTTCGAACGCTGTAAGCTAGCGCAGAGGTAGAGCAGCTTG
CTGGAGTACCGACGTTTTCAGAGCAGTAGAACTTTCTTTCCTGTGACTTG
TGGCAGTCCCCGCACGTACAGTTCGGCAGGCACTGGGTGATACCAAGCGT
GTGGTGGACAATGCACCGCACGGGGCGGTGGCGAAATGGCCGCAAATGAT
TGAAAACTTGTATCCGCAGATTCACACCCGGGTCATGCTGGAGACGATGC
CACTCACTTGGACTCGTCTTCTGGGGCGTTCGTGATTTGTGTGTACGGTC
GCGCTCGTGCTTGCAGCATGAAGCAAAAGCCACGCCTTATCAGTAAACAA
CTCTCGCACTCCCTTACATGACTTTGGTATCGTACCAAAACATTATTGTT
GTAGATGATGGGAGAAACCTCACATTTCGTCGGCCACACCCCTGGTCGTG
ACCGTGCATCATCCAGGCGGATCTTCGCCAATGAGTTGAAGCCAGAGAGT
CTGCCCATTGGTCTCTTCTCAGGGGTTCCCCAACTGCAAAACCTGTGAGT
GCATCTCTCATATTGGTGGGGGTGGAGGCTACACAAAGTTTTCGCCGGTA
TGCCTACGCCGCCGTACTGACTGCTTTGGAATGTGAGGGAGGCTTGCATT
GACGACCATTTAGAAGCTAGCGGCTGCTCGTAATTGGTGTAGGGTTATCT
CGCCGTTTTCTCATCCTACTGCTGGGAACTTCATTTCCCTAGCTGATAAG
GCTACAGCGGTGTTCGAGGCCTTGTATTCCGGAACGTTTGCTTTCATCAG
CGACTGAGGCTGTCCGGAATGGTGGTAAGTTCGTGATGGACGAGTCAAAG
ATCTAGAGCTCCATCCACACTTGGGTTGTTGGTCGCCCGCGCATTGAAAG
TCGCCGCCTCCCTTTGCACCCGGAATCCTCCAGGTACCTTAGCCACAACG
ACCTGAAGGATATGACTGGTCTGGAGGGGTTGTTTGGCGGCCTTACGGAG
CTCGTCAGCTTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig188:6528..8042+

>mRNA_P-littoralis_Contig188.1.1 ID=mRNA_P-littoralis_Contig188.1.1|Name=mRNA_P-littoralis_Contig188.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig188:6528..8042+ (Pylaiella littoralis U1_48)
GAACTACACTCCAACCGCCTGGTGACCGTGTCCGAAGGGCTCTTCGATGG
ACTCACCAAGCTCGAGTTCTTGGACATGGCCTTCAACGACCTGTCCAGCT
TGCCCGAGGGGGCGTTCTCCGACCTTTCGAGCCTTCGAACGCTGCGGATC
TTCGCCAATGAGTTGAAGCCAGAGAGTCTGCCCATTGGTCTCTTCTCAGG
GGTTCCCCAACTGCAAAACCTGTACCTTAGCCACAACGACCTGAAGGATA
TGACTGGTCTGGAGGGGTTGTTTGGCGGCCTTACGGAGCTCGTCAGCTTG
TGA
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