mRNA_P-littoralis_Contig187.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig187.40.1
Unique NamemRNA_P-littoralis_Contig187.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A6H5KI40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI40_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.170e-37
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 MAERGETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSSTGRTG----AAPGDPEYKKMMLYMREQ 309
            MA RGETTA+C+SR+KGVAS Q+LAGP DPKEAKER+PRSLRAIYG+  VNNAVHAS S++SATREL FWFP + R+  S G        A GDP+Y +MM YM+E+
Sbjct:  344 MAGRGETTAICVSRVKGVASLQALAGPADPKEAKERAPRSLRAIYGEDTVNNAVHASASVKSATRELNFWFPESFREVLSGGSPAPTSTVARGDPKYDEMMTYMQEE 450          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A7S1CGX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGX1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.140e-15
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPA 219
            G TTAL + R   +  W+ LAGPTD  +A++ +P S+RA +G     NAVH S S+ESA RE+ FWFPA
Sbjct:  298 GTTTALVLERNNAIKGWRLLAGPTDTSKARDCAPASIRAQFGTDGTKNAVHGSDSIESAAREVAFWFPA 366          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: E4WZV0_OIKDI (Nucleoside-diphosphate kinase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4WZV0_OIKDI)

HSP 1 Score: 74.7 bits (182), Expect = 2.220e-14
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSSTGRT 252
            G   A+ +++   +  W+ L GPT+P +A+ER P S+RA++G     N+VH S S+ SA+RE+ F+FP    +P  TG+T
Sbjct:   72 GPIIAIVLAKKNAIEDWRKLMGPTNPMDARERFPDSIRALFGKDQTQNSVHGSDSVASASREIRFFFPQMILEPIPTGQT 151          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A7D9HI64_PARCT (Thioredoxin domain-containing 3 homolog isoform X4 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HI64_PARCT)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSSTGRTGAAP 264
            G++T L + R   V  W++L GPTDP+EA+E++P S+RA++G  +  NAVH S + E A   +E  FP     P+  GR    P
Sbjct:  514 GQSTVLLLEREDAVTGWRALMGPTDPEEAREQAPESIRAVFGKDICKNAVHGSSNTEKAGPVIEELFPEVELLPN--GRAMVTP 595          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: UPI00106B0D55 (thioredoxin domain-containing protein 3 homolog isoform X1 n=3 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B0D55)

HSP 1 Score: 72.0 bits (175), Expect = 1.610e-12
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSSTGRTGAAPGDP 273
            G++T L + R   V  W+++ GPTDP+EA+E++P S+RA++G  +  NAVH + +L+ A + ++  FP     P+  G+T  +P  P
Sbjct:  519 GQSTVLLLEREDAVTGWRAMMGPTDPEEAREKAPDSIRAVFGKDICRNAVHGASNLDKAGQVIDELFPEVELLPN--GKTIVSPQIP 603          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: T1FX75_HELRO (NDK domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FX75_HELRO)

HSP 1 Score: 69.7 bits (169), Expect = 1.990e-12
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFP 216
            G    L + +   V  W++L GPTD ++A+E  P SLRA+YG     NA H S SLESA RE++F+FP
Sbjct:   77 GYIIVLVLGKQNAVLDWRNLIGPTDSEKARESHPHSLRALYGKDKEVNAFHGSDSLESAKREIKFFFP 144          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A8H7R1K4_9FUNG (Nucleoside diphosphate kinase n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7R1K4_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 3.320e-12
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 RGETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSST 243
            RG    L +SR K V   + L GPT+P  A++  P+++RA+YG  +  NA+HAS S ESA +E++F+F  A + P+ T
Sbjct:  117 RGPIRVLALSRRKAVPKLRDLIGPTNPDMARQSFPKTIRALYGTDIQENAIHASDSRESAEKEIKFFF--AEQDPTHT 192          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A6P8Q6Q7_GEOSA (nucleoside diphosphate kinase homolog 5 isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8Q6Q7_GEOSA)

HSP 1 Score: 68.9 bits (167), Expect = 4.310e-12
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   25 ALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSSTGR 249
            A+ ++R   VA W+ L GPT+   AKE  P SLRA++G+  + NAVH S S  SA RE+ F FP A  +P   G+
Sbjct:   81 AMTIARQNAVAYWKELMGPTNSLIAKETHPTSLRAVFGNDDLRNAVHGSSSFTSAEREIRFMFPNAIIEPIPVGQ 155          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A835IDB3_9MAGN (Nucleoside diphosphate kinase n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IDB3_9MAGN)

HSP 1 Score: 67.0 bits (162), Expect = 1.250e-11
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWF 213
            G  + + + ++  +A W++L GPTD K+AK   P S+RAI G     N VH S S++SA RE+ F+F
Sbjct:   92 GPVSVMVLEKVNAIADWRALIGPTDAKKAKITHPHSIRAICGMDTERNCVHGSDSVQSALREISFFF 158          
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Match: A0A7J6V5X3_THATH (Nucleoside diphosphate kinase n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V5X3_THATH)

HSP 1 Score: 67.4 bits (163), Expect = 1.610e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   13 GETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVVNNAVHASGSLESATRELEFWFPAASRKPSSTGR 249
            G    + + ++  VA W++L GPTD ++AK   P S+RA+ G     N VH S SL+SATRE+ F+F    R+  STG+
Sbjct:  105 GPVFVMVLEKVNAVADWRALIGPTDARKAKITDPHSIRAMCGLDSQRNCVHGSDSLQSATREISFFF----REIVSTGK 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig187.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI40_9PHAE2.170e-3765.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CGX1_9STRA8.140e-1550.72Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
E4WZV0_OIKDI2.220e-1440.00Nucleoside-diphosphate kinase n=1 Tax=Oikopleura d... [more]
A0A7D9HI64_PARCT1.180e-1240.48Thioredoxin domain-containing 3 homolog isoform X4... [more]
UPI00106B0D551.610e-1236.78thioredoxin domain-containing protein 3 homolog is... [more]
T1FX75_HELRO1.990e-1247.06NDK domain-containing protein n=1 Tax=Helobdella r... [more]
A0A8H7R1K4_9FUNG3.320e-1242.31Nucleoside diphosphate kinase n=1 Tax=Mucor saturn... [more]
A0A6P8Q6Q7_GEOSA4.310e-1245.33nucleoside diphosphate kinase homolog 5 isoform X1... [more]
A0A835IDB3_9MAGN1.250e-1141.79Nucleoside diphosphate kinase n=1 Tax=Coptis chine... [more]
A0A7J6V5X3_THATH1.610e-1141.77Nucleoside diphosphate kinase n=1 Tax=Thalictrum t... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig187contigP-littoralis_Contig187:293845..295199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog38833.XP_003056664.1
Preferred nameRSP23
PFAMsDpy-30,IQ,NDK
Model size311
Max annot lvl33090|Viridiplantae
KEGG koko:K20790
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.12e-14
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota,37US9@33090|Viridiplantae
DescriptionNucleoside diphosphate kinase
Cds size309
COG categoryG
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789895.0752175-CDS-P-littoralis_Contig187:293844..2939591680789895.0752175-CDS-P-littoralis_Contig187:293844..293959Pylaiella littoralis U1_48CDSP-littoralis_Contig187 293845..293959 -
1680789895.0857637-CDS-P-littoralis_Contig187:294657..2947551680789895.0857637-CDS-P-littoralis_Contig187:294657..294755Pylaiella littoralis U1_48CDSP-littoralis_Contig187 294658..294755 -
1680789895.0946121-CDS-P-littoralis_Contig187:295103..2951991680789895.0946121-CDS-P-littoralis_Contig187:295103..295199Pylaiella littoralis U1_48CDSP-littoralis_Contig187 295104..295199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig187.40.1prot_P-littoralis_Contig187.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig187 293845..295199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig187.40.1

>prot_P-littoralis_Contig187.40.1 ID=prot_P-littoralis_Contig187.40.1|Name=mRNA_P-littoralis_Contig187.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MAERGETTALCMSRIKGVASWQSLAGPTDPKEAKERSPRSLRAIYGDGVV
NNAVHASGSLESATRELEFWFPAASRKPSSTGRTGAAPGDPEYKKMMLYM
REQ
back to top

mRNA from alignment at P-littoralis_Contig187:293845..295199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig187.40.1 ID=mRNA_P-littoralis_Contig187.40.1|Name=mRNA_P-littoralis_Contig187.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1355bp|location=Sequence derived from alignment at P-littoralis_Contig187:293845..295199- (Pylaiella littoralis U1_48)
ATGGCGGAACGAGGAGAGACGACCGCGCTCTGTATGTCCAGAATCAAGGG CGTGGCCTCCTGGCAGTCGCTCGCGGGACCGACTGACCCCAAGGAGGTGT GTCATGGTTGTACGCTGCACAGTTGTTTGACAGACGTTTTTTTCTCGTGT CTTGCTTCTACTTGTCCTGCACAAAGCACATCGTACCGCGTGACACACCG AATATGCAACATGAATTGTTTTTGATTCAGCCCGGCTTGCGTTTGGTTAT CTCGGAAACCGTTCTTCCCACGCAAATGTCTGTCAGTACGACCGTGCCAA TGTGTCCAATTTTTTCGATCACGGGGATGGACTAAACGACGTTCTTTGTT TGCAATGTATCTGGTACTTATTGACCTAGCACCGGTGACATCGGTAACAT AACCTTCAAGGGTTCGCACGTCTCTCTGATGTCCTTCTCGTCAGGCAAAG GAGCGTTCACCCCGTAGCTTGAGGGCAATCTACGGGGACGGCGTGGTCAA CAACGCGGTACACGCGAGTGGCTCCTTGGAAAGCGCAACCAGGTGCAGAT CCACGAAAGGTTTCAAAATTTCGTCTCCATTAGTTAACACGGCGTTGGAA ACCTTACAACACCTGACCCTTGTTTCCTGGCCAAGCTCAAAGAACAAGTA AAGTGCGCACGATAGTTGAGGGTCTATACATCTTTTTCATTTCTCGTGTT CTCGTGTGCATTTCAAGGTGTTCGTGTATCATGTTTTTGTGTTCTGGCGA GCAGGATGTGTCGTCAACACCGTTCGGTATTCGTTGAAGCTCGACATCGA GGTTTCCAGCGAGACACCCGCGGCTGAAAGTGCGCGTGCGCGCGCGCGAG TGTGTGTGTGCGCAGAGGAGGTGTCAGATGCACTGCTTTTCTGAACCTCC CCCCGGGGGTGTTCTCCCCGGGATATATTTTCATCCATTTCACCTTCTCT CTTTTCTGTGGTTGCCCCTTGGGGATCATGTTAAGCAGGTTTTGGTTGTC TCTCTAAGGGGGGAACTTTAGTGCTTTTAGGACACTTGTCGGGCTACAGA AGGAAAAAAAGGACTTCGACGAGATCGAAGTCAAAACAAAATAATCGCTC GCTCCGTATGCGACAGATGGCAACAACAAAAGTGTATCTACGCATGCATG CATGTGCATGCAGGAAGCCAACACGCGCCCCATCGTTTGTTTTTTGGCGC TTCTCTGCGATTCAAAATCGGCTTCGTTTCAAAAATACAGAGAACTAGAG TTTTGGTTCCCAGCAGCCTCCCGAAAGCCTTCCTCAACTGGGCGTACCGG CGCCGCCCCGGGGGATCCGGAGTATAAAAAGATGATGCTGTACATGAGGG AACAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig187:293845..295199-

>mRNA_P-littoralis_Contig187.40.1 ID=mRNA_P-littoralis_Contig187.40.1|Name=mRNA_P-littoralis_Contig187.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig187:293845..295199- (Pylaiella littoralis U1_48)
ATGGCGGAACGAGGAGAGACGACCGCGCTCTGTATGTCCAGAATCAAGGG
CGTGGCCTCCTGGCAGTCGCTCGCGGGACCGACTGACCCCAAGGAGGCAA
AGGAGCGTTCACCCCGTAGCTTGAGGGCAATCTACGGGGACGGCGTGGTC
AACAACGCGGTACACGCGAGTGGCTCCTTGGAAAGCGCAACCAGAGAACT
AGAGTTTTGGTTCCCAGCAGCCTCCCGAAAGCCTTCCTCAACTGGGCGTA
CCGGCGCCGCCCCGGGGGATCCGGAGTATAAAAAGATGATGCTGTACATG
AGGGAACAG
back to top