mRNA_P-littoralis_Contig187.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig187.39.1
Unique NamemRNA_P-littoralis_Contig187.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig187.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig187contigP-littoralis_Contig187:260315..261477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789895.0378368-CDS-P-littoralis_Contig187:260314..2603991680789895.0378368-CDS-P-littoralis_Contig187:260314..260399Pylaiella littoralis U1_48CDSP-littoralis_Contig187 260315..260399 -
1680789895.0470302-CDS-P-littoralis_Contig187:261295..2614771680789895.0470302-CDS-P-littoralis_Contig187:261295..261477Pylaiella littoralis U1_48CDSP-littoralis_Contig187 261296..261477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig187.39.1prot_P-littoralis_Contig187.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig187 260315..261477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig187.39.1

>prot_P-littoralis_Contig187.39.1 ID=prot_P-littoralis_Contig187.39.1|Name=mRNA_P-littoralis_Contig187.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MCYIRISFICESFCEWLQIEPEDVLKQPLFSIVDPRDTYALNDAVLQVLA
RGSGHPDSAGSGPDTASMQQQQQQPQQLSAPIAESGFNG
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mRNA from alignment at P-littoralis_Contig187:260315..261477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig187.39.1 ID=mRNA_P-littoralis_Contig187.39.1|Name=mRNA_P-littoralis_Contig187.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1163bp|location=Sequence derived from alignment at P-littoralis_Contig187:260315..261477- (Pylaiella littoralis U1_48)
ATGTGCTATATACGAATCAGCTTCATTTGTGAGAGCTTCTGCGAGTGGCT
TCAGATTGAGCCGGAGGATGTCCTGAAACAACCGCTGTTTAGCATCGTCG
ATCCCCGAGACACTTACGCGCTGAACGACGCCGTACTCCAGGTACTAGCT
AGAGGAAGCGGTCACCCAGACAGCGCCGGGAGGTGAGGGGAAAGCCCACA
GTAGGAACGATTGAAATTCATATATTCGTGTGCGACATAGCTTGACGATT
CGTCAAGCCTACTGGTGGAGTGACATACTGAATAGACAGGTGGAGGTGAC
TTTCTTCGGATGGGCTCCTCTTTTTTGTCTTGTGAGAGCACGGTTTCAAC
AGCTGAAGTACGTAGTGCACACAGCTTTGCTGGCCATACCAGTGTGATGA
TGCGTAAAACAGCTTATTTTCGAACGGGCTTGCTTGTGTACCGCTTGCAT
TTGCGCGAGGTAATCGTAGCCCCTTGACGAGCTGCAGCATCCACATACAT
ACGAATATACATACATGCCACACTCGCGTGCAAAACTGGTCACTTTCGTA
CGCCTTGACCCCAAAGGCGATGGGCTTACATCGGTCCGCCTCGGTGTGTC
TTTAAAACCTATGACCCGCCTACCTCTTGTATGGCGGCCGTAACAACGCC
GTTGAACGAGCTCAAACACGCCACCATCATCCAGGGGGTGTGGTACCCCC
GATTTGATACAGTATCTTGATTGAGCGATGAATCCGAAGGCAAACACATC
AAATCGCCGCCGAACACTTGGTTGGCTGGAGCTTTCGGCGTGCAACGAAC
ATTATCAATCCGTAGGTGACAGTAGCCGCCACCCAGAACAAGACGTCTTG
ACAACAAGGGGTGCTATTTCCAGACCTCAACACGTGAAGAAATCCCAAAC
ACTCAGAGCATGTCGGAATCTCCCTGACCACGGTGTGCCCTCGTCAGGAA
CGGACCAGCACCATTTGGGGATACCATCTACTGTCGTAATTGTCGCAACC
CTTCGCCATACCTCCATCTCTTCAAGCCTCCCGTTTTGTTTCAAACCTCG
TTGCTATCCTTTCCTTTCCACTCTGCAGTGGTCCGGATACCGCATCCATG
CAGCAGCAGCAGCAGCAGCCTCAACAGCTTTCGGCGCCGATTGCAGAGAG
TGGCTTTAACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig187:260315..261477-

>mRNA_P-littoralis_Contig187.39.1 ID=mRNA_P-littoralis_Contig187.39.1|Name=mRNA_P-littoralis_Contig187.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig187:260315..261477- (Pylaiella littoralis U1_48)
ATGTGCTATATACGAATCAGCTTCATTTGTGAGAGCTTCTGCGAGTGGCT
TCAGATTGAGCCGGAGGATGTCCTGAAACAACCGCTGTTTAGCATCGTCG
ATCCCCGAGACACTTACGCGCTGAACGACGCCGTACTCCAGGTACTAGCT
AGAGGAAGCGGTCACCCAGACAGCGCCGGGAGTGGTCCGGATACCGCATC
CATGCAGCAGCAGCAGCAGCAGCCTCAACAGCTTTCGGCGCCGATTGCAG
AGAGTGGCTTTAACGGG
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