mRNA_P-littoralis_Contig187.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig187.25.1
Unique NamemRNA_P-littoralis_Contig187.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig187.25.1 vs. uniprot
Match: D7G4L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L8_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.400e-86
Identity = 165/298 (55.37%), Postives = 199/298 (66.78%), Query Frame = 1 
Query:    1 SLVRLGMFKSANDAKSRFIHKHMKSATALAQVS--PEAG-AREVGVPLSNHWGGPAGLPLAKVSPPLAVTATEAALEDYRRSQRLERVRNICLSNIKSRSRRNDNHGSRSHRSGASTSTRTRISKLKQRHYDD---------HLGNNKVRRAHHXXXXXXXXXXXXXXXXXXRQ-QHRPPSTHAVILPQGAGLVLVGVDGVRKSKFPRGCEQAPAATRAVAN--PVRCKARG---DEDVLARLCDPKHFTGTAATGHLPTVVDLEGGVGVLLKGASISVKDHIGAQEVSWRLRLAERL 840
            SL RLG+FKSANDAKSRFIHKH+++ATAL+  S  PE G    +  PL  HWGGP   P AKV+ P+AV ATEAALEDYR+ +R ER+R+      +S+S+     G +S  S    ++  R ++L++   +D         H  +   R  H                   RQ +HRPPSTHAVILP+G GLVL+G DGVRKSKFPRGCE + AA  +VA   P+  K+ G   D+DVLARLC+PKHFTGTAATGHLP VVDLEGGVGVLLKGASI+VKDHIG QEVSWRLRLAERL
Sbjct:    9 SLARLGLFKSANDAKSRFIHKHIRAATALSHTSSSPEVGEGMGMPEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTSVVPKAS-ARGARLQRGRSEDSFVVGKKTNHCEHPSPRHPHQHLRHHPHPCQRGGHNSDQRQPKHRPPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCELSAAAMASVATTPPLESKSSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 305
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BLAST of mRNA_P-littoralis_Contig187.25.1 vs. uniprot
Match: A0A6H5KLC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC7_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 3.190e-68
Identity = 154/298 (51.68%), Postives = 180/298 (60.40%), Query Frame = 1 
Query:    1 SLVRLGMFKSANDAKSRFIHKHMKSAT-ALAQVSPEAG---AREVGVPLSNHWGGPAGLPLAKVSPPLAVTATEAALEDYRRSQRLERVRNICLSNIKSRSRRNDNHGSRSHRSGASTSTRTRISKLKQRHYDDHLGNNKVRRAHHXXXXXXXXXXXXXXXXXXRQQH---------RPPSTHAVILPQGAGLVLVGVDGVRKSKFPRGCEQAPAATRAVANPVRCKARGDE-----DVLARLCDPKHFTGTAATGHLPTVVDLEGGVGVLLKGASISVKDHIGAQEVSWRLRLAERL 840
            SL RLG+FKSANDAKSRFI+KH+++AT A    SPE G    R+   PL  H  GP   P AKV+ P+AV ATEAALEDYR+ +R E +R+      KS  +     G +S  S    ++    S  + R  D  + + K  +  H            XXXXXX  +H         R PSTHAVILP+G GLVL+G DGVRKSKFPRGCE + A                      DVLARLC+PKHFTGTAATG LP VVDLE GVGVLLKGASI+VKDHIG QEVSWRLRLAERL
Sbjct:   37 SLARLGLFKSANDAKSRFINKHIRAATLAHTSSSPEVGEGMGRQE--PLPRHCSGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAEIIRDHRGPGSKSEPQGPGPEGLKSLASAVPKASARGASLRRGRSDDGFVVSKKTNQREHPSPRHPHQYLRHXXXXXXXGEHNSDQPQPKQRSPSTHAVILPKGGGLVLIGEDGVRKSKFPRGCEPSSATXXXXXXXXXXXXXXXXXXXXXDVLARLCNPKHFTGTAATGRLPVVVDLERGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig187.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L8_ECTSI2.400e-8655.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLC7_9PHAE3.190e-6851.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig187contigP-littoralis_Contig187:237614..241431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1016
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000110.1
Cds size825
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig187.25.1prot_P-littoralis_Contig187.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig187 237787..241413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789894.7785249-UTR-P-littoralis_Contig187:237613..2377861680789894.7785249-UTR-P-littoralis_Contig187:237613..237786Pylaiella littoralis U1_48UTRP-littoralis_Contig187 237614..237786 -
1680789894.8280785-UTR-P-littoralis_Contig187:241413..2414311680789894.8280785-UTR-P-littoralis_Contig187:241413..241431Pylaiella littoralis U1_48UTRP-littoralis_Contig187 241414..241431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789894.789522-CDS-P-littoralis_Contig187:237786..2378761680789894.789522-CDS-P-littoralis_Contig187:237786..237876Pylaiella littoralis U1_48CDSP-littoralis_Contig187 237787..237876 -
1680789894.7981691-CDS-P-littoralis_Contig187:238732..2392071680789894.7981691-CDS-P-littoralis_Contig187:238732..239207Pylaiella littoralis U1_48CDSP-littoralis_Contig187 238733..239207 -
1680789894.8076675-CDS-P-littoralis_Contig187:240373..2405881680789894.8076675-CDS-P-littoralis_Contig187:240373..240588Pylaiella littoralis U1_48CDSP-littoralis_Contig187 240374..240588 -
1680789894.8167326-CDS-P-littoralis_Contig187:241368..2414131680789894.8167326-CDS-P-littoralis_Contig187:241368..241413Pylaiella littoralis U1_48CDSP-littoralis_Contig187 241369..241413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig187.25.1

>prot_P-littoralis_Contig187.25.1 ID=prot_P-littoralis_Contig187.25.1|Name=mRNA_P-littoralis_Contig187.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=275bp
MFKSANDAKSRFIHKHMKSATALAQVSPEAGAREVGVPLSNHWGGPAGLP
LAKVSPPLAVTATEAALEDYRRSQRLERVRNICLSNIKSRSRRNDNHGSR
SHRSGASTSTRTRISKLKQRHYDDHLGNNKVRRAHHHDHDDNQQNKHRQD
QHQHRQQHRPPSTHAVILPQGAGLVLVGVDGVRKSKFPRGCEQAPAATRA
VANPVRCKARGDEDVLARLCDPKHFTGTAATGHLPTVVDLEGGVGVLLKG
ASISVKDHIGAQEVSWRLRLAERL*
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mRNA from alignment at P-littoralis_Contig187:237614..241431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig187.25.1 ID=mRNA_P-littoralis_Contig187.25.1|Name=mRNA_P-littoralis_Contig187.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3818bp|location=Sequence derived from alignment at P-littoralis_Contig187:237614..241431- (Pylaiella littoralis U1_48)
AGCCTCGTGAGGCTAGGGATGTTCAAGTCGGCCAATGACGCTAAGTCAAG
GTTCATCCACAAGGTGTGTGTGCTGTACATATGTGTGCGCGCGCATTCTC
CGGCCTTAGCGTAGCCTAAAATCCGCATATCGCTTAAGCGATGCAATTGT
TCCTTTCAGCTGGTCAGGTACCGAAACGATTTCGTCAGACAAGGTCAGAA
GAGAGAGGTTACGGAACGGTACAGGAGCCTTCGGATCCATGTACATGTCT
CCGTTTGCACAAGCACAGATCGACCGCGTGTTAACCTAGCAAGGGAAACA
TTGTTTGCCTGCCGTGGTCCTCCACCGAGTAGCGGTTCTACGTGAACAGT
GGGCGAAGCCACCGCGCCGCCTGTGTTTGTGTGCCTGAAAGCCAAGGCGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAAAGAAA
GAGGGAAAACATCACGTACGTATGTGTGTCGTCCTGCAGCACCACTGGCC
TCCGGTGGATTCGTTCCGTGCATTCGTGCTGTAGTAAGATGCGTTGACAG
GCGGGCGTATCGGGCCAACAACATCGAGGCTAGGTATATCCAGAAGATGC
ACTCTTGAGCGATTGACCTGGTTTCTCATCCTCACATCTCAAAAGCTTGA
AGTTCTTGATGCGTACAACCAGGATACCAAACACTAAATTCGAGTGGTTT
CTCGCTTCCCAAAACCTAGAGGCACGCCTGGCACGTTTCGGGTAGTCGTG
CACGGTGGGTGCCATCAGGCTGGTGCCCTCATCATCTTGTTCTGCTACAT
CAAGGCACGTAGCTGTTGAAAAATCGCACGCAAAAATTTACAGCACATGA
AGTCGGCGACGGCTCTGGCACAAGTGTCACCGGAGGCGGGAGCGCGAGAA
GTGGGGGTACCACTTTCGAACCACTGGGGCGGTCCAGCTGGCTTACCCCT
CGCGAAAGTTTCACCGCCGTTGGCGGTTACGGCCACGGAAGCGGCGCTCG
AGGACTACCGGCGGAGCCAGAGATTAGAGCGAGTGAGAAATATATGCTTG
TCGAATATGTGTTCGCCTGAAGCTGTCTCCGTGTATCTACGACTCACGGA
ATACACTTTCGTTGTGGGTAGCATCCACATTTGATGGTTACGTGTACCGA
GGAAGCGCTTGAGGACTAGCGGCGGGCCAGAGTAGAAGGAGTGAAAATGA
CTATGGTGGGCTTCAGATCGTGTGTAGTTGTCGCAATTCTTTTTGGTACG
TCATCTCCTCGCTGTGCGCGTCACGGGTGTATCTACAAATAGCGCTGGAA
ACATTGAGGCCATTCGTTGCGTCCGGGGCGAGAAGCATGCACCCGCGGAA
GGAAGAAGCGGTTGAGGGTACTGACCCTTCGGTCACTCATCGTGCTATTC
ATTTTCGATGCTGAAACGCGACCGTTTCAATTTGGGACCAAATACCACTC
CTTGTCCTGTGTCGAGAAATATCGTTTCGGGTACGAATTTTTCGAGACCA
TTCTCCGATCGATCTAAACAGGACCCATCTTTTCGGAACATATTTATTTC
TCGACAGGATACTAGATCCCAAATAACTTGGTTGGAAACTTTTGCAAACG
CCACATCTCTGGTTCACCACAATTAGGGAGTGACATTTAAAGGAAATTTG
CGAGACGATTGTTGCCTCGCGGTCTCGAGCGATCACCACGCGACATGGAC
CATAATACAGCTCACGGGGGATGGCCTTCGCATAGCTCTACTTCGATTTT
TTCAAGAGCGACGACGGGAATGCAAGCTGGTGGCAGTGTATAGGCTAAGA
TTCACTGGTACGCACTGAACATACGAACAGTAACCAGCAGCAGCAGCGGC
GGAAGCAATGCATTCTTGCGCGTAACCAGTTTTCGATTTCGTTCACAACT
GTCGAACGAATGAAGCCACAGCAATGACTAAGGCACCACCTTTTGTGAGA
TGTGTTTATGATCTTTCTCGTCTCGTGCTTGTTTGAGGATTTGATACGCT
TGCATAAAAATCAACGTTTGTTATGCCACCCGCGAAAATAAAATTGCCCC
TCCTCTGTGGCCTCACTATCACAAGAAAGGAAGCATCTTGTAGGTATTTG
ATCACACTCAAAACGGGTTTCAACGAATGAATTGCTAAAACCCCCTGTCA
ACTTCATCATGCATCCCGTTTTAATTGTCTTATTGCGGTACAAATGCCTG
ACCCTTGCAGAAACGCGGCCACAGCAAAAGTCGTTCAAGAAGGAACGACA
ACCACGGCTCCCGATCGCACAGGTCAGGGGCATCAACATCGACACGAACA
CGAATATCAAAACTGAAGCAAAGGCACTACGATGACCACCTTGGGAACAA
CAAAGTGCGCCGCGCTCATCACCATGATCATGACGACAACCAACAAAACA
AACACCGGCAAGACCAGCACCAACATCGCCAGCAACACCGACCGCCATCG
ACACACGCCGTGATCCTGCCGCAGGGGGCAGGGCTGGTTTTAGTAGGGGT
AGATGGCGTTCGCAAGAGCAAGTTTCCGAGGGGATGCGAGCAAGCACCTG
CAGCGACAAGGGCAGTTGCCAATCCCGTTCGTTGCAAGGCGCGGGGGGAC
GAAGACGTCTTGGCGAGGCTTTGTGACCCTAAGCATTTCACCGGGACTGC
TGCCACGGGGCACCTTCCGACTGTCGTGGATCTCGAGGGAGGGGTCGGGG
TGAGTCGAGGCATGCGTTTTTTTTTTCATTTTGCCATACCATATCACACG
CATTGAGTCCGTGTGTTTGTATGATGTTTGCTTGCTTGACGTGTGGTGTC
ATGTCGAGGATGTCTTCCAAGTTAGTTGGTGTTGATAGTTCTTTGCTCTA
AATATACTTTTTTTTATCTATATTTACGGCCTCGCAAACGCTTGTTTGAT
CGTCTGTTGATCCTACGTAACCGCGGTGTACACCATTCAAATTTCGGGGG
GGGGGCGTCACTTCGTAGTTATTTGCTACTTGATAAATGCCCTTTAATTT
CGTGAGAAATGTGATTACAACCCTGAGGGAAATCCGTGGTTCAACAGCTG
ACAGCTCTCCGAGCCCCGAATGTTACTTTTCTTAGATATCGACTTTACCA
CTGCTGTGCTAGAAAGCGGTCAGCGGCTGACTGTCTAGCACGGTGGTAAA
GTGTGTATCCAACATATGCTTCGCTTCAAAGCTTAATGTTTTTAGTAGTG
GCACTGAGTTGGCTCTCAATGTTACTGCTATGCATAGGTGCACCTTCCTG
GCGTAGTCGTTCTTAAGACAGCGAGGGCTGGTAAACGCCGGGCGCTTCTC
TTCAATCTCTCTCTGCCTCTCTCCGCCCACATCGAACGAAAAGCCAGAAA
TTAGATAGAAGCCCCGTTGATTTAACCAATAGCATCTCCACAAAACCATA
TCATGTCCCTATTTGCTGCAAGTACTTCGAAGTGTGAGCTAGCCCACCGT
TCAAATTATTTTTCCTCCTGACACGAAATGTTCCTGGTTCGCAACCCTCA
AAATGGTAGTCATCTCACTATGTATCCTCCCTCATGGTGCGTGCGTGTAC
CCCAGGTGTTGCTGAAGGGTGCTTCGATTTCCGTGAAGGACCACATAGGC
GCACAAGAAGTCAGCTGGAGGCTACGGCTCGCGGAACGACTTTGAACAAC
ACACATGTTCTTTCCGTTCCGGAACAACTACGTACGGAGAAAGGCAAACA
ATACAAAAACATGAAAGCATGAAAATAATGAAATATCGACACAATATTCG
GCATGATAGTAATGAATGGTTGTTGGCGAGAGAAAGGGGACCGTTGCAAT
TATCGCAGTATGAGAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig187:237614..241431-

>mRNA_P-littoralis_Contig187.25.1 ID=mRNA_P-littoralis_Contig187.25.1|Name=mRNA_P-littoralis_Contig187.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig187:237614..241431- (Pylaiella littoralis U1_48)
ATGTTCAAGTCGGCCAATGACGCTAAGTCAAGGTTCATCCACAAGCACAT
GAAGTCGGCGACGGCTCTGGCACAAGTGTCACCGGAGGCGGGAGCGCGAG
AAGTGGGGGTACCACTTTCGAACCACTGGGGCGGTCCAGCTGGCTTACCC
CTCGCGAAAGTTTCACCGCCGTTGGCGGTTACGGCCACGGAAGCGGCGCT
CGAGGACTACCGGCGGAGCCAGAGATTAGAGCGAGTGAGAAATATATGCT
TGTCGAATATCAAAAGTCGTTCAAGAAGGAACGACAACCACGGCTCCCGA
TCGCACAGGTCAGGGGCATCAACATCGACACGAACACGAATATCAAAACT
GAAGCAAAGGCACTACGATGACCACCTTGGGAACAACAAAGTGCGCCGCG
CTCATCACCATGATCATGACGACAACCAACAAAACAAACACCGGCAAGAC
CAGCACCAACATCGCCAGCAACACCGACCGCCATCGACACACGCCGTGAT
CCTGCCGCAGGGGGCAGGGCTGGTTTTAGTAGGGGTAGATGGCGTTCGCA
AGAGCAAGTTTCCGAGGGGATGCGAGCAAGCACCTGCAGCGACAAGGGCA
GTTGCCAATCCCGTTCGTTGCAAGGCGCGGGGGGACGAAGACGTCTTGGC
GAGGCTTTGTGACCCTAAGCATTTCACCGGGACTGCTGCCACGGGGCACC
TTCCGACTGTCGTGGATCTCGAGGGAGGGGTCGGGGTGTTGCTGAAGGGT
GCTTCGATTTCCGTGAAGGACCACATAGGCGCACAAGAAGTCAGCTGGAG
GCTACGGCTCGCGGAACGACTTTGA
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