mRNA_P-littoralis_Contig187.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig187.24.1
Unique NamemRNA_P-littoralis_Contig187.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig187.24.1 vs. uniprot
Match: D7FQY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 9.710e-114
Identity = 174/262 (66.41%), Postives = 205/262 (78.24%), Query Frame = 1 
Query:  244 LPAIPAAHGATHALQRICDGLLAG---AELQDVENQLMEVEHEYFSQASAWSKTFTPFRSVVAEVADS-------FTISVLVLPRGTKLEWQRHDHAHSVSRLLFGNLSVSNLELQGSDNSRKLEQQELEATYTDAWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRLSEDTARPGFWRAGPQTVRRVEAVEPSAVLEVHVGPRKTRYYQEIASQAEVDNAVELIETLAPLGVKPGVCRYLGPYVDLR 999
            + ++  AH +   LQR+ + L A    A+L +VE  + EV+ + F QAS W +++T  R VVA+ A++        ++SVLVLPRGTKLEW R+  A S SR LFGNLS+ + ELQGSDN+RKLEQQELEATY D WAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALR  E+++R   WRAGPQTVRR+EA+EPSA+LEVHVGPR TRYY+EI SQ E  +AVELIETL PLGVKPGVCRYLGP VDLR
Sbjct:    1 MESVNVAHSSPDGLQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASVWERSWTSMRCVVADTAETPPSLSTCISMSVLVLPRGTKLEWHRYHEARSFSRQLFGNLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEESSREACWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIPSQTE--DAVELIETLTPLGVKPGVCRYLGPSVDLR 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig187.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY2_ECTSI9.710e-11466.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig187contigP-littoralis_Contig187:221605..226588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1715
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003310.1
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig187.24.1prot_P-littoralis_Contig187.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig187 222315..226558 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789894.6556067-UTR-P-littoralis_Contig187:221604..2223141680789894.6556067-UTR-P-littoralis_Contig187:221604..222314Pylaiella littoralis U1_48UTRP-littoralis_Contig187 221605..222314 -
1680789894.751305-UTR-P-littoralis_Contig187:226558..2265881680789894.751305-UTR-P-littoralis_Contig187:226558..226588Pylaiella littoralis U1_48UTRP-littoralis_Contig187 226559..226588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789894.6701155-CDS-P-littoralis_Contig187:222314..2224311680789894.6701155-CDS-P-littoralis_Contig187:222314..222431Pylaiella littoralis U1_48CDSP-littoralis_Contig187 222315..222431 -
1680789894.6907015-CDS-P-littoralis_Contig187:222653..2227971680789894.6907015-CDS-P-littoralis_Contig187:222653..222797Pylaiella littoralis U1_48CDSP-littoralis_Contig187 222654..222797 -
1680789894.7077641-CDS-P-littoralis_Contig187:223128..2233041680789894.7077641-CDS-P-littoralis_Contig187:223128..223304Pylaiella littoralis U1_48CDSP-littoralis_Contig187 223129..223304 -
1680789894.7187424-CDS-P-littoralis_Contig187:223678..2237801680789894.7187424-CDS-P-littoralis_Contig187:223678..223780Pylaiella littoralis U1_48CDSP-littoralis_Contig187 223679..223780 -
1680789894.7301-CDS-P-littoralis_Contig187:224038..2243071680789894.7301-CDS-P-littoralis_Contig187:224038..224307Pylaiella littoralis U1_48CDSP-littoralis_Contig187 224039..224307 -
1680789894.7422156-CDS-P-littoralis_Contig187:226391..2265581680789894.7422156-CDS-P-littoralis_Contig187:226391..226558Pylaiella littoralis U1_48CDSP-littoralis_Contig187 226392..226558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig187.24.1

>prot_P-littoralis_Contig187.24.1 ID=prot_P-littoralis_Contig187.24.1|Name=mRNA_P-littoralis_Contig187.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=325bp
MIALLVQRYRSLCTSGALLLCATPGTGFCPGVSTTRGVVASSATQRMRGT
CGEISRCSSGDRHGSTRRSTALPAIPAAHGATHALQRICDGLLAGAELQD
VENQLMEVEHEYFSQASAWSKTFTPFRSVVAEVADSFTISVLVLPRGTKL
EWQRHDHAHSVSRLLFGNLSVSNLELQGSDNSRKLEQQELEATYTDAWAV
GGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRLSEDTARP
GFWRAGPQTVRRVEAVEPSAVLEVHVGPRKTRYYQEIASQAEVDNAVELI
ETLAPLGVKPGVCRYLGPYVDLRE*
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mRNA from alignment at P-littoralis_Contig187:221605..226588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig187.24.1 ID=mRNA_P-littoralis_Contig187.24.1|Name=mRNA_P-littoralis_Contig187.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4984bp|location=Sequence derived from alignment at P-littoralis_Contig187:221605..226588- (Pylaiella littoralis U1_48)
CCACCGTCCTGCTGCAGTGATCCTTCAGCCATGATTGCGCTATTGGTGCA
ACGCTATCGATCCCTGTGCACTAGTGGCGCTCTGCTGTTGTGCGCAACCC
CAGGAACTGGCTTCTGTCCTGGTGTCTCAACAACGCGGGGAGTTGTCGCA
TCATCTGCGACTCAAAGGATGAGAGGGACTTGCGGCGAGATTTCGCGGTG
AGTAATCCTCAGCCCAGGGAGTGAGCGCAGGAGTGATCCATATGCTAGTG
TGTGTATCTGCAGTCGCGCTCCGTGGCTATGCGTAGATTGTACAACAGGC
GCTGTGCAACGTCCTTTCGCTGTCCGCGCAAAAAAATCGAACTTCCGGCT
CGGACACACCACCACGCTGATGTAGATAATCCATCGTAATTTGTTTACAG
CAGGAGAACCGGTACTGTTGTAGTCGTGCATCATATCGTATGTGGGGTTG
AGATATTAGACTGTTTCGGATTTGGAAAAAAAATCAGAGTTAAGCTTTAA
GATTTAGAAATAAGGACCGTACCCCTGAACGGGGCTGACAGCTCCGATTT
ATCTCCGGGACCTCGGGGGACCTCGCTTTGAGATTTATAAGTAACAGCTA
TTTTGGGAGCTTATTTCTAAATGATTTTCTCTCCTTCTCGCTCTCAGAAA
TAATGCGTCATGGGGAACAACCTAGGCCACCAGGCGCGCACTGGTCACAC
TTTCGCCATGCAGAATCTTCCATCAGTGACAACCTGCTGGAACAACATAG
CCACAGGTTTCGTGGCTGAGGTGCTCTCGGCAGGCCCACGTACGTACGTG
TATATAGCCACCTCTGTAGTACTGCTATGATGCTGCTGCTGCCGTGTGCT
TGCTGTATGATACTCTTATCATATTTTTATCTGCTGCTGCTGCTGCTGCT
GTATGTAGCCCAAGTCTCGAGCTCCTCGTGTTGTGATATCAGAAGATGCA
TACATCCATATTGCTATATGCATATATGTATAATGATGCTGCTGTGTCTT
ACTGGTGACTGCTGTACCCACGGAAGACTGTTGTCTTTTTGGACGACACC
AGTCAATAGAGGGGACAGAGGGCACAAGCACACGACAGAGCACAGTAAAA
ACAGCATAAAGTAGTACCCACGGTTGACAAAGCAAAAGCAACAACGACAA
CAACAACAACACTGATTTTATTTTTGTGAGACACAACAAGGAAGGCAGAG
GGCCCACACCGCATAATGCTCTCTCCCTGCAGAAAAAGCTAAAGAGATCA
GCTACATGTGATAGAGCTACCCACCGCGGTGTCAGCAGTATCGGTCATGC
ACAACCTAACCTACTCTTCCTGTGAGAGATTGGGAGATTGGTTGTGGTGA
CCCGCCTAATATCTGCTGCTGTTGTTGTCGAGTGCCACTTGCAGTCCCAA
ACTGTTGTCGTATGATATCATATGCCTCTGTCTTTGTTCGCTCAAAATGC
TGGACTCATCGAAGAAAACACAGAAACACTCCGACTCGCACACCACCGCA
ACGCGGCAGAGGTGGAGCCCAAGAATGGTCAGCATCATGGTGTATACAGC
ATCGAAAGCTTCATGTATCTATCCCTACGCGGAGAAATCAGTGGCTTTGT
CGTCTGTGAGCCAGATGCAATTTTGTCTGAACCCAACGAACCCTCATCGC
ACGTGTACCCACCGGCAATCGCGCCTGACCCTACCGGTCAAATCAGCCCA
GCTTAAATCTGAAACTGTTCGCCTTCAGGAGTGGTCTGCGGATCGCCGCT
TCTAAATCTGAGCGTCTGTTTAAATCTGAAAAATCAGAGCTCGAGTCCGA
AACTGTGTATTTCCCTGTCCAGATTTAGAGTTGAGCAAGATTTTGGGAAA
AAAGCTGGTTCTTGACGACCTGGAGTCCGAACACACGCTACGATATGTCG
TACTCTCACTCGCTTTGGCTACACTGCTGCATGTCGTATCTCGTCATGCC
CGGGGAGCAGGTGGGTTGACTTCTGCATTCGGGTGGGAGTATGTCCCCAC
TGCTGTTCTTTTTTCCGCCCTCGACTTGAACATACGTGCTGCGCAGACCA
ACTTGACCTTCGAGGAGGATGCAGATGAAGCGAAATGACTTAGGTCCTGG
GTCTCTGACCGGGCCTCGCCGAAGTGACTATCATATGATACAGCAGCGTA
GCTTGTTTGTGCCTCGCATCCTTCATCGTATGATATGCAGCGTTACAAGT
GTGTAGGTTGCGGTCGTTGCGTCATCAATCCTGTAACAAAAGCATGGGTT
GTACATCCTACACGTGCTGACACTCGTGAAGGTGTTCCTCTGGCGACCGA
CATGGTTCCACAAGGCGGTCAACAGCACTACCAGCAATACCGGCGGCACA
TGGCGCAACCCACGCCCTGCAGAGGATATGCGACGGATTGTTAGCAGGGG
CTGAGCTGCAGGACGTGGAGAACCAATTGATGGAGGTGGAACACGAATAC
TTCTCGCAAGCTTCTGCTTGGTCAAAAACGTTCACTCCGTTCAGGAGCGT
CGTGGCCGAGGTCGCCGACAGCTTCACCATTAGCGTCTTGGTCCTCCCTC
GTGAGTTGATGCGGAGATCCTTTGTGCGCGGTCATCTACCGTCGCTTCGT
TTGTCACCACGGCTACGCGACCGTCCACAAGTTACAGACTGCAGAGACCT
TTGTGTATCGGCGATCATCCTCTCTTGATGGACCATTGTTTAGTTCTGAA
CCGAAACCTGCTGCTAACCCAGGGCGGTTCGGGCGCTAGAAGTGGGTATT
TGTCTTTGAAAGACGGCAGTCGGCAGTAAATCTGAGGTTCCTCTTGCCTC
TCGTACAGGAGGGACAAAACTCGAGTGGCAGCGACACGACCATGCTCACA
GCGTTTCGAGGCTGCTCTTCGGGAACTTGAGTGTCAGCAATCTCGAGCTT
CAAGGATCTGGTGAGGGTAAACTTTCTCGTACTCGCACAGAGCAAATGCA
AGAACGTACATCCCCTCCCCTGTACATGATTGATTTTCACGTAGAGATGG
CAGCTGTACACATTTCTCGGTATGGGGCTCGAACAATTATTATTCCTGGT
CTGTCGGGTACTTCAGTTGGATGAGGTTTTCATGATGTTTTGAATCCACA
TTACAACCCGCGATGAATGAAGAAAGAATCATCATTTACAGCCCGCTTAT
TGAATACCCCGCTCCAAAACATGACGCAGTGCTGGCTGGGCTCCGAATAG
CCGAACGTGGAGCGTGATACTTGTGCTTGCCCTCACTGAACACATGCCGC
CCTTATCTCGTTCCGGGTCTACCGCATCTTTCAGACAACTCACGGAAGCT
CGAACAACAGGAGCTTGAGGCAACGTACACGGATGCTTGGGCTGTCGGGG
GGAGCGAGGAGAGCGACTGCGTGTGCAGAGGAGGTAGATGCCCCCGCATG
TGGGATTGCCCCTTCTGGGTCGACAGGAGACGCGCGGAGGCCAAGGGAAG
CAGTGCTCACGTGAGCAAAGATTTGCGGGCGCGGTACACACATACATGCG
TTGAAGAGTTACCACGAAAGCCAGATATTTATGGGTACAGACCTCATGCA
TGCGTTGAAGAGTCACCACGACTGCGAGTGTGCCAGATTTTGTGCCAGTT
GTGATCGATCTGAAAGCACGACCACCCCAACGACAAGTATGTGCCGCCGT
TTCCTGCGTGAAGAATCTTCCTGCCGGGATATAACGGGAGGGTGCTAAGG
GACAACGAAAGACGAGATAATTCTGTTTTAATGCCTGCAAACCCAAGCAA
GGAACACAGCAAGACCTAATCTCGTGCGCTCTTGTCTCCAGGTTGCATTA
AGGCTTTCGGAAGATACTGCCCGTCCCGGTTTTTGGAGAGCAGGACCTCA
AACCGTGAGGAGGGTGGAGGCAGTAGAGCCTTCTGCAGTCCTCGAAGTCC
ACGTGGGGCCAAGGAAAACACGGTACTATCAGGAGGTGGGTTGGTTGCCC
GTTGCTGAGAGATTAGAGAGCTCCTGAATTTCTGAGTCAGAAATTGGTTG
TAATCACGTCGTCATGTCCTGTGCGGCGCGATTGCAGTTCTAATACAATG
TGTGTGACACACACTTATCCAACGATATCCCTGTTCGTCAATCCTGGACT
GTTGCTGTGCCTCGTCTGCTTGTCTGCGCGCATACCACCGTGCCGCCACC
CACGCAGATTGCGTCACAGGCTGAGGTTGATAACGCGGTAGAGCTTATCG
AAACCCTCGCCCCGTTAGGAGTCAAGCCCGGCGTGTGTCGATATCTCGGA
CCATACGTAGATCTTCGCGAGTAGCGTTCTTGCCTTCAATCGTCACCTTC
GGAGATGCGGGAGGCTCGGTGATGAGCCTGACCACTCAGTAGCACGTATC
CCCTCGGCCGACAGCAAATGCCTTAACGCAAGATGTGGTGAAGACTGCGC
ATTCTTCTCGGGACGGGTTTGTGTTCTTGATCGTATTGAGAAGAGGGCAG
AGACACACACAACGCGCACGTTTTCGGCTAGCAGCTGTTTTTTTTCAGAG
TGCAGCAAGGAGAGGAAAATCCAGCGATCAATGCAGAGCATGCTGCTCTC
GCCAGCGTAGCCGAATAGGGTCTCAAGAATGCCGGAATGAAAAAGTGAAA
TTGCCCCGTAGGAGGATTCGTTACGCGCACAAGTACAAACAAGAGTGGCT
GCAGCAGCATTCTTGTGCAACACGGTGCGTAGCTTTGCATTGTGATGGCT
CGGCCGGAGCGTCGAACACGCCCACATGATCGAGTTTAGTATGAGAGAGG
GAGTCTTTGGTGTGTTCTTAGTGTGAGTGAATGTTGGTTTGTTTTCCTCA
AGAGACGGGGGACTCTACCCCCTACGAGAGAAGCTCTTTTGACCGCGCAG
AGAAGACGTCAAACTCCCACAGCACCGCGTTTTGAAGCGTGCCTGATGAC
GTCGCTTCCAACACAGAGGCACTCACGGGAACCAGTGAGAAAATAATGTC
GAACGAGAGGGCGCGATGCTGTTTTGTACTTGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig187:221605..226588-

>mRNA_P-littoralis_Contig187.24.1 ID=mRNA_P-littoralis_Contig187.24.1|Name=mRNA_P-littoralis_Contig187.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=975bp|location=Sequence derived from alignment at P-littoralis_Contig187:221605..226588- (Pylaiella littoralis U1_48)
ATGATTGCGCTATTGGTGCAACGCTATCGATCCCTGTGCACTAGTGGCGC
TCTGCTGTTGTGCGCAACCCCAGGAACTGGCTTCTGTCCTGGTGTCTCAA
CAACGCGGGGAGTTGTCGCATCATCTGCGACTCAAAGGATGAGAGGGACT
TGCGGCGAGATTTCGCGGTGTTCCTCTGGCGACCGACATGGTTCCACAAG
GCGGTCAACAGCACTACCAGCAATACCGGCGGCACATGGCGCAACCCACG
CCCTGCAGAGGATATGCGACGGATTGTTAGCAGGGGCTGAGCTGCAGGAC
GTGGAGAACCAATTGATGGAGGTGGAACACGAATACTTCTCGCAAGCTTC
TGCTTGGTCAAAAACGTTCACTCCGTTCAGGAGCGTCGTGGCCGAGGTCG
CCGACAGCTTCACCATTAGCGTCTTGGTCCTCCCTCGAGGGACAAAACTC
GAGTGGCAGCGACACGACCATGCTCACAGCGTTTCGAGGCTGCTCTTCGG
GAACTTGAGTGTCAGCAATCTCGAGCTTCAAGGATCTGACAACTCACGGA
AGCTCGAACAACAGGAGCTTGAGGCAACGTACACGGATGCTTGGGCTGTC
GGGGGGAGCGAGGAGAGCGACTGCGTGTGCAGAGGAGGTAGATGCCCCCG
CATGTGGGATTGCCCCTTCTGGGTCGACAGGAGACGCGCGGAGGCCAAGG
GAAGCAGTGCTCACGTTGCATTAAGGCTTTCGGAAGATACTGCCCGTCCC
GGTTTTTGGAGAGCAGGACCTCAAACCGTGAGGAGGGTGGAGGCAGTAGA
GCCTTCTGCAGTCCTCGAAGTCCACGTGGGGCCAAGGAAAACACGGTACT
ATCAGGAGATTGCGTCACAGGCTGAGGTTGATAACGCGGTAGAGCTTATC
GAAACCCTCGCCCCGTTAGGAGTCAAGCCCGGCGTGTGTCGATATCTCGG
ACCATACGTAGATCTTCGCGAGTAG
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