mRNA_P-littoralis_Contig187.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig187.16.1
Unique NamemRNA_P-littoralis_Contig187.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig187.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig187contigP-littoralis_Contig187:151909..152724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size208
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789893.1489818-CDS-P-littoralis_Contig187:151908..1519901680789893.1489818-CDS-P-littoralis_Contig187:151908..151990Pylaiella littoralis U1_48CDSP-littoralis_Contig187 151909..151990 -
1680789893.168334-CDS-P-littoralis_Contig187:152599..1527241680789893.168334-CDS-P-littoralis_Contig187:152599..152724Pylaiella littoralis U1_48CDSP-littoralis_Contig187 152600..152724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig187.16.1prot_P-littoralis_Contig187.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig187 151909..152724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig187.16.1

>prot_P-littoralis_Contig187.16.1 ID=prot_P-littoralis_Contig187.16.1|Name=mRNA_P-littoralis_Contig187.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
LPQKSRAARESSRHNSTSCAAQRERLGVRKGSPARRSPTLYWTAFGCSRV
SNSIRHGDGSMQCLSSCG*
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mRNA from alignment at P-littoralis_Contig187:151909..152724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig187.16.1 ID=mRNA_P-littoralis_Contig187.16.1|Name=mRNA_P-littoralis_Contig187.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=816bp|location=Sequence derived from alignment at P-littoralis_Contig187:151909..152724- (Pylaiella littoralis U1_48)
CTCCCCCAAAAAAGTCGCGCCGCGCGCGAGAGTTCGAGGCACAACTCCAC
CTCGTGCGCAGCGCAGAGAGAACGGCTCGGCGTGAGGAAGGGATCACCGG
CGAGAAGAAGTCCTACGCTATACTGGTGAGTTGGTTTCATCACCATAACC
ACAGTAGCGAGACCACGCGCGGCATCCTCGTGAAAGGCGCGTGTTTCATA
TTGGACTCGGCGGCCCGGGTATTTTACAGCAGCATTGGTGTGGTGTTTAT
GCAGCCGCGCGGGTCTGCAGCATGCTTAATATGCGAGACTAAGTACGCCA
TACGTGGGATAGACATGTTGAGAACACCCGTGGCTTGTCCGAGTTTTGGA
TCAAAACTAAAGCCGGAGCTAGAGGTATTTGAAAAAGCACACAAATCTGC
TGCACGATCCCGCCGCTTGCGATAACTACTTGATTTCAGAGTGTGTCGTG
GTCAAAGTTTTGTGCTGTTTTATGTATGTACTACCCCGGCAGCGCTGCTA
CCCCACTGCTGTTTGCACTGCTGTACGGTACTTGCACAGCGCGGAGTAGT
ACCTGAGCTGTACGGGTACATACACAGCACGGAGTAGTAACGGAGCTGCA
CGTTTCTGAGTGTGTGTGTTGTAATGCCAGGCGTGTATGGTGCATATATA
TACGTATGTATCCGCGTACTCATCATGTCATCTGCTCCCGCCGTCCTGCT
GCTTCCGTCTTTCACGACGCGTTGTTCTATTCAGGACGGCTTTTGGCTGT
AGCCGTGTGAGCAACAGCATACGACATGGAGATGGAAGTATGCAGTGCCT
GTCGTCGTGCGGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig187:151909..152724-

>mRNA_P-littoralis_Contig187.16.1 ID=mRNA_P-littoralis_Contig187.16.1|Name=mRNA_P-littoralis_Contig187.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig187:151909..152724- (Pylaiella littoralis U1_48)
CTCCCCCAAAAAAGTCGCGCCGCGCGCGAGAGTTCGAGGCACAACTCCAC
CTCGTGCGCAGCGCAGAGAGAACGGCTCGGCGTGAGGAAGGGATCACCGG
CGAGAAGAAGTCCTACGCTATACTGGACGGCTTTTGGCTGTAGCCGTGTG
AGCAACAGCATACGACATGGAGATGGAAGTATGCAGTGCCTGTCGTCGTG
CGGATGA
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