prot_P-littoralis_Contig186.134.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig186.134.1
Unique Name	prot_P-littoralis_Contig186.134.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	205

Homology

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BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 9.960e-92
Identity = 147/207 (71.01%), Postives = 168/207 (81.16%), Query Frame = 0

Query:    1 MMSRDGFKTRWGIMRSHLKSGMCAGVIQARRKHVPDFHASKFPPVADKVFEDFVQAHRKGDMHALAGLTTEELYDSLKSEIKKTKSKGGRRPAFRLVAFGEPTRVLQMRVDRKPHISPKEGWGQVTCRLCTKRELVVVDANGKEVRPAEDDEKATEAQNVTIGIFEVFFGDSSGRWRLAVVQEVGEAAAGAV--TGATKP-PQAPPQ 204
            MMS +G + R GIMRSHLKSG+CAG+IQ   KHVPDFH SKFPPVA+++F+DF +AHRKGD  ALAGLTTEELY SLK EIK +KS+G +R AFRLV F EPT VLQMRVDRK HISPKEGWGQVTCRLC++R+L+VVDA G EV  A+ DE AT AQNVT+G+FE FFGDS+GRWRLA+VQE  EA AGA   TG TK  PQA  Q
Sbjct:   44 MMSSEGVRERLGIMRSHLKSGVCAGIIQ---KHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVTCRLCSERQLLVVDAKGNEVE-AKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEFAEAPAGATSATGKTKKSPQAQAQ 246

[Close]

BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA)

HSP 1 Score: 149 bits (377), Expect = 5.330e-42
Identity = 76/184 (41.30%), Postives = 113/184 (61.41%), Query Frame = 0

Query:    6 GFKTRWGIMRSHLKSGMCAGVIQARRKHVPDFHASKFPPVADKVFEDFVQAHRKGDMHALAGLTTEELYDSLKSEIKKTKSKGGRRP----AFRLVAFGEPTRVLQMRVDRKPHISPKEGWGQVTCRLCTKRELVVVDANGKEVRPAEDDEKATEAQNVTIGIFEVFFGDSSGRWRLAVVQEVG 185
            G K R+ + + H+KS     +I   +KHVP F    FPP+AD+VF+ F+ AHRKGD+ +L  L TE L+D++K+++ +   K G  P    AF+L+   EPT VLQ+R   +     K GWGQ+T +  T RE++ VD  G+EV+P     K  E+  +T+G+ E+FF D +  WRLA++ EVG
Sbjct:   12 GLKHRFTVYKGHMKSSAAIAII---KKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTSREILAVDRRGREVQPPPGGNKVVES--ITMGVLEIFFNDPAHTWRLAMLHEVG 190

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig186.134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FKT9_ECTSI	9.960e-92	71.01	Tim44 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A835YW25_9STRA	5.330e-42	41.30	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007379	Tim44-like domain	PFAM	PF04280	Tim44	coord: 26..179 e-value: 2.9E-8 score: 33.9
None	No IPR available	GENE3D	3.10.450.240		coord: 26..192 e-value: 5.4E-21 score: 76.9
None	No IPR available	PANTHER	PTHR28554	39S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL	coord: 3..178
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 16..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig186	contig	P-littoralis_Contig186:405204..407260 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig186.134.1	mRNA_P-littoralis_Contig186.134.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig186 404328..407756 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig186.134.1 ID=prot_P-littoralis_Contig186.134.1|Name=mRNA_P-littoralis_Contig186.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=205bp
MMSRDGFKTRWGIMRSHLKSGMCAGVIQARRKHVPDFHASKFPPVADKVF
EDFVQAHRKGDMHALAGLTTEELYDSLKSEIKKTKSKGGRRPAFRLVAFG
EPTRVLQMRVDRKPHISPKEGWGQVTCRLCTKRELVVVDANGKEVRPAED
DEKATEAQNVTIGIFEVFFGDSSGRWRLAVVQEVGEAAAGAVTGATKPPQ
APPQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007379	Tim44-like_dom
IPR032710	NTF2-like_dom_sf